View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7639_low_1 (Length: 517)
Name: NF7639_low_1
Description: NF7639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7639_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-131; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 5 - 313
Target Start/End: Original strand, 43383617 - 43383943
Alignment:
| Q |
5 |
agggctagtcccaggaatgtcaagggctgtttcgccaatacaacaa------taaccgcttcttctaagtctactactggaaggacattcatgacgcctc |
98 |
Q |
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| T |
43383617 |
agggctagtcacaagaatgtcaagggctgtttcgccaatacaacaacaacaataaccgcttcttctaattctactactggaaggacgttcatgacgcctc |
43383716 |
T |
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| Q |
99 |
acgatgacacaatgactcgtggtggaaacgtgg------aaggggaagcggttaataataatgagatgataaactgcatcatcggacacaagtgtagcat |
192 |
Q |
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| T |
43383717 |
acgatgacacaatgactcgtggtggaaacgtggaagtggaaggggaagcggttaataataatgagatgattaactgcatcatcggacacaagtgtagcat |
43383816 |
T |
|
| Q |
193 |
atgtttgagggtatttagcactggacaagcactcggtggtcataagaggtgtcattgggaaaaagtggaaccca------caacaccaacaccaacacta |
286 |
Q |
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| T |
43383817 |
atgtttgagggtatttagcactggacaagcactcggtggtcataagaggtgtcattgggaaaaagtggaacccaaaacaccaacaccaacaccaacacta |
43383916 |
T |
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| Q |
287 |
ccatttgatttgaatttcccttttcca |
313 |
Q |
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| T |
43383917 |
ccatttgatttgaatttcccttttcca |
43383943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 120 - 313
Target Start/End: Original strand, 25870423 - 25870613
Alignment:
| Q |
120 |
gtggaaacgtggaaggggaagcggttaataataatgaga-tgataa--actgcatcatcggacacaagtgtagcatatgtttgagggtatttagcactgg |
216 |
Q |
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| T |
25870423 |
gtggaaacgttgaaggggaagaggttaatagtaataataataataatgactgcatcatcggacacaagtgtagcatatgtttgagggtatttagcactgg |
25870522 |
T |
|
| Q |
217 |
acaagcactcggtggtcataagaggtgtcattgggaaaaagtggaacccacaacaccaacaccaacactaccatttgatttgaatttcccttttcca |
313 |
Q |
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| T |
25870523 |
acaagcactcggtggtcataagaggtgtcattgggataaaggggaaccca------cgacaccaacactaccatttgatttgaatttcccttttcca |
25870613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 338 - 381
Target Start/End: Original strand, 11740957 - 11741000
Alignment:
| Q |
338 |
tcttcttcttctccaaacacataaatcacaacccaccctcttct |
381 |
Q |
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| T |
11740957 |
tcttcttcttctccaaacacataaatcacaaatcaccctcttct |
11741000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 154; Significance: 2e-81; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 338 - 507
Target Start/End: Complemental strand, 42534175 - 42534006
Alignment:
| Q |
338 |
tcttcttcttctccaaacacataaatcacaacccaccctcttctctaaaatctctccaacaactttttctctaaaaaattcatcatcaagaaaatggaag |
437 |
Q |
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|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
42534175 |
tcttcttcttttccaaacacataaatcacaacccacccttttctctaaaatctctccaacaactttttctatcaaaaattcatcatcaagaaaatggaag |
42534076 |
T |
|
| Q |
438 |
cttcatccatacagtttctaatgtcgctgcttaaccggttgtggaaatcgaatctctccctcctttcatc |
507 |
Q |
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| T |
42534075 |
cttcatccatacagtttctaatgtcgctgcttaaccggttgtggaaatcgaatctctccctcctttcatc |
42534006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 85; Significance: 3e-40; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 347 - 461
Target Start/End: Complemental strand, 44045166 - 44045048
Alignment:
| Q |
347 |
tctccaaacacataaatcacaacccaccctcttct---ctaaaatctctccaacaactttttctct-aaaaaattcatcatcaagaaaatggaagcttca |
442 |
Q |
| |
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|||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
44045166 |
tctccaaacacataaatcacaacccaccatcttcttctctaaaatctctccaacaactttttctctcaaaaaattcatcataaagaaaatggaagcttca |
44045067 |
T |
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| Q |
443 |
tccatacagtttctaatgt |
461 |
Q |
| |
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|||||||| |||||||||| |
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| T |
44045066 |
tccatacaatttctaatgt |
44045048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 460 - 499
Target Start/End: Complemental strand, 44044951 - 44044912
Alignment:
| Q |
460 |
gtcgctgcttaaccggttgtggaaatcgaatctctccctc |
499 |
Q |
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| T |
44044951 |
gtcgctgcttaaccggttgtggaaatcgaatctctccctc |
44044912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 381
Target Start/End: Complemental strand, 6589660 - 6589627
Alignment:
| Q |
348 |
ctccaaacacataaatcacaacccaccctcttct |
381 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |
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| T |
6589660 |
ctccaaacacataaatcacaactcaccctcttct |
6589627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 448
Target Start/End: Original strand, 402017 - 402079
Alignment:
| Q |
390 |
tctccaacaactttttctctaa-aaaattcat---catcaagaaaatggaagcttcatccata |
448 |
Q |
| |
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|||||||||||||| ||||| | ||||||||| |||||||||||||||||||||||||||| |
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| T |
402017 |
tctccaacaactttctctctcagaaaattcatcatcatcaagaaaatggaagcttcatccata |
402079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 338 - 381
Target Start/End: Complemental strand, 7295083 - 7295042
Alignment:
| Q |
338 |
tcttcttcttctccaaacacataaatcacaacccaccctcttct |
381 |
Q |
| |
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| T |
7295083 |
tcttcttcttctccaaacac--aaatcacaactcaccctcttct |
7295042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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