View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7639_low_12 (Length: 251)

Name: NF7639_low_12
Description: NF7639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7639_low_12
NF7639_low_12
[»] chr7 (23 HSPs)
chr7 (15-241)||(42295063-42295289)
chr7 (118-241)||(19277295-19277418)
chr7 (116-241)||(982951-983076)
chr7 (118-237)||(30216040-30216159)
chr7 (118-241)||(21326820-21326943)
chr7 (118-241)||(22197988-22198111)
chr7 (118-241)||(22239710-22239833)
chr7 (132-241)||(40726476-40726585)
chr7 (118-241)||(4501261-4501383)
chr7 (118-241)||(28517269-28517392)
chr7 (129-239)||(32584605-32584715)
chr7 (127-240)||(2904368-2904481)
chr7 (118-241)||(5825275-5825396)
chr7 (118-241)||(24527591-24527714)
chr7 (134-241)||(27521473-27521580)
chr7 (159-222)||(45613865-45613928)
chr7 (118-197)||(3676685-3676764)
chr7 (118-241)||(10905120-10905242)
chr7 (146-241)||(43856876-43856971)
chr7 (163-222)||(48539202-48539261)
chr7 (118-241)||(9281114-9281236)
chr7 (118-241)||(9292085-9292207)
chr7 (128-197)||(25186928-25186997)
[»] chr3 (25 HSPs)
chr3 (118-241)||(37132981-37133104)
chr3 (120-241)||(53785711-53785832)
chr3 (118-238)||(39583211-39583331)
chr3 (126-241)||(7900860-7900975)
chr3 (118-241)||(13582512-13582634)
chr3 (143-241)||(52741519-52741617)
chr3 (143-240)||(49017966-49018063)
chr3 (126-241)||(44198769-44198884)
chr3 (128-241)||(7502003-7502117)
chr3 (129-241)||(26856755-26856867)
chr3 (126-241)||(3443302-3443417)
chr3 (128-239)||(26772762-26772873)
chr3 (143-241)||(32546797-32546895)
chr3 (126-221)||(46940760-46940855)
chr3 (141-218)||(38670885-38670962)
chr3 (126-238)||(54508373-54508486)
chr3 (126-222)||(4473082-4473178)
chr3 (141-241)||(51234618-51234718)
chr3 (175-241)||(25325031-25325097)
chr3 (164-246)||(38978827-38978909)
chr3 (143-241)||(37992334-37992432)
chr3 (118-240)||(38146059-38146181)
chr3 (164-241)||(21552670-21552746)
chr3 (126-241)||(3376730-3376846)
chr3 (127-179)||(45676778-45676830)
[»] chr2 (21 HSPs)
chr2 (118-241)||(4413048-4413171)
chr2 (118-241)||(41867890-41868013)
chr2 (118-241)||(28225002-28225125)
chr2 (126-243)||(2888516-2888633)
chr2 (126-238)||(13147087-13147202)
chr2 (126-211)||(19161773-19161858)
chr2 (118-222)||(23484920-23485023)
chr2 (142-241)||(34814825-34814923)
chr2 (126-219)||(9685405-9685498)
chr2 (159-218)||(2886638-2886697)
chr2 (118-241)||(5532422-5532544)
chr2 (118-241)||(27502364-27502487)
chr2 (144-206)||(11921218-11921280)
chr2 (120-241)||(17344640-17344761)
chr2 (118-198)||(1296032-1296112)
chr2 (130-241)||(33612542-33612652)
chr2 (151-221)||(18744969-18745039)
chr2 (118-192)||(44720374-44720448)
chr2 (118-237)||(3825732-3825852)
chr2 (128-241)||(44686418-44686535)
chr2 (164-241)||(20142753-20142830)
[»] chr4 (23 HSPs)
chr4 (118-243)||(132385-132510)
chr4 (126-241)||(56462097-56462211)
chr4 (118-241)||(53619588-53619711)
chr4 (151-241)||(50483211-50483301)
chr4 (118-218)||(31847112-31847212)
chr4 (126-241)||(55933452-55933565)
chr4 (159-241)||(7536594-7536676)
chr4 (126-220)||(30940729-30940822)
chr4 (159-241)||(34107719-34107801)
chr4 (128-241)||(600684-600797)
chr4 (126-239)||(12918362-12918475)
chr4 (118-246)||(50000907-50001036)
chr4 (126-197)||(23255750-23255821)
chr4 (136-236)||(25504302-25504402)
chr4 (128-191)||(45386053-45386116)
chr4 (127-218)||(46440880-46440971)
chr4 (129-207)||(48656903-48656981)
chr4 (126-240)||(50462936-50463050)
chr4 (126-241)||(26521490-26521605)
chr4 (162-241)||(3329998-3330077)
chr4 (160-193)||(24719984-24720017)
chr4 (132-216)||(16957569-16957653)
chr4 (161-241)||(53098423-53098503)
[»] chr5 (24 HSPs)
chr5 (126-241)||(37873628-37873743)
chr5 (126-241)||(13166900-13167015)
chr5 (118-238)||(32269779-32269899)
chr5 (126-241)||(43129536-43129651)
chr5 (118-241)||(15292008-15292131)
chr5 (139-241)||(42921699-42921801)
chr5 (126-222)||(26212573-26212669)
chr5 (118-241)||(25663014-25663137)
chr5 (118-241)||(33692037-33692160)
chr5 (126-241)||(35310450-35310565)
chr5 (129-214)||(3114156-3114241)
chr5 (128-241)||(34335339-34335452)
chr5 (143-240)||(38875641-38875738)
chr5 (126-241)||(27336695-27336810)
chr5 (135-236)||(35455963-35456064)
chr5 (126-190)||(8858969-8859033)
chr5 (126-241)||(14423684-14423795)
chr5 (161-236)||(14723269-14723344)
chr5 (135-193)||(26577399-26577457)
chr5 (129-240)||(8100555-8100666)
chr5 (168-241)||(22188687-22188760)
chr5 (140-240)||(43115461-43115561)
chr5 (129-192)||(13307407-13307470)
chr5 (159-197)||(430648-430686)
[»] chr1 (23 HSPs)
chr1 (118-241)||(20259779-20259902)
chr1 (126-241)||(21473005-21473120)
chr1 (118-222)||(19035468-19035572)
chr1 (126-241)||(28041117-28041232)
chr1 (126-241)||(34644568-34644683)
chr1 (118-218)||(31737305-31737405)
chr1 (129-241)||(2898704-2898819)
chr1 (128-243)||(22346895-22347010)
chr1 (159-241)||(29169816-29169898)
chr1 (118-239)||(45659630-45659751)
chr1 (126-241)||(4861979-4862094)
chr1 (127-197)||(37200028-37200098)
chr1 (134-241)||(2764481-2764588)
chr1 (165-241)||(24177540-24177616)
chr1 (126-198)||(50161407-50161479)
chr1 (128-239)||(37932210-37932320)
chr1 (151-241)||(38731611-38731701)
chr1 (131-191)||(50314619-50314679)
chr1 (126-240)||(25375823-25375937)
chr1 (124-192)||(15584925-15584993)
chr1 (172-239)||(17307409-17307476)
chr1 (153-218)||(7213275-7213341)
chr1 (172-241)||(47459684-47459753)
[»] chr6 (16 HSPs)
chr6 (118-241)||(45659-45782)
chr6 (118-241)||(4206578-4206701)
chr6 (128-240)||(959583-959695)
chr6 (144-241)||(4165930-4166027)
chr6 (129-222)||(24016358-24016451)
chr6 (118-246)||(33220693-33220821)
chr6 (118-241)||(34304498-34304621)
chr6 (121-221)||(34415458-34415558)
chr6 (126-241)||(17249295-17249410)
chr6 (159-241)||(28625932-28626015)
chr6 (126-222)||(34554267-34554363)
chr6 (118-197)||(357699-357778)
chr6 (143-241)||(29338086-29338184)
chr6 (126-197)||(34168914-34168985)
chr6 (115-197)||(3714963-3715045)
chr6 (118-197)||(28008969-28009051)
[»] chr8 (15 HSPs)
chr8 (131-241)||(35739981-35740091)
chr8 (118-238)||(6592580-6592700)
chr8 (118-241)||(24125030-24125153)
chr8 (134-241)||(38815296-38815403)
chr8 (129-241)||(3187971-3188083)
chr8 (126-218)||(39434692-39434784)
chr8 (126-232)||(8882339-8882444)
chr8 (144-236)||(6618291-6618383)
chr8 (126-216)||(500254-500344)
chr8 (128-243)||(25021806-25021921)
chr8 (126-197)||(8619860-8619931)
chr8 (144-240)||(28196195-28196291)
chr8 (141-192)||(10189594-10189645)
chr8 (151-236)||(39671186-39671272)
chr8 (118-176)||(22589336-22589394)
[»] scaffold0148 (1 HSPs)
scaffold0148 (120-241)||(33252-33373)
[»] scaffold0490 (1 HSPs)
scaffold0490 (126-241)||(6336-6451)
[»] scaffold0009 (1 HSPs)
scaffold0009 (120-241)||(103108-103228)
[»] scaffold0470 (1 HSPs)
scaffold0470 (144-236)||(7609-7701)
[»] scaffold0493 (1 HSPs)
scaffold0493 (145-219)||(8525-8599)
[»] scaffold0186 (1 HSPs)
scaffold0186 (126-239)||(10364-10481)
[»] scaffold0119 (1 HSPs)
scaffold0119 (118-186)||(16191-16259)
[»] scaffold0110 (1 HSPs)
scaffold0110 (126-215)||(47529-47618)
[»] scaffold1768 (1 HSPs)
scaffold1768 (126-238)||(174-286)
[»] scaffold0085 (1 HSPs)
scaffold0085 (120-182)||(37391-37453)
[»] scaffold0031 (1 HSPs)
scaffold0031 (129-207)||(49447-49525)


Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 15 - 241
Target Start/End: Original strand, 42295063 - 42295289
Alignment:
Q  15 aatcgaatttgagaccttaaggatgaacatattttaaggtttcgaaccaacaccactaaaccaactcaaatgggtt-acttaaatgtgatgataaaagat 113  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||    
T  42295063 aatcgaatttgagaccttaag-atgaacatattttaaggtttcgaaccaacaccactaaaccaactcaagtgggtttacttagatgtgatgataaaagat 42295161  T
Q  114 ttcataaaagcggcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcc 213  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42295162 ttcataaaagcggcgtcaagcaaaatggccaaacataagaaagcttcttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcc 42295261  T
Q  214 tagcaccagggattgttgaccttctaca 241  Q
    || |||||||| ||||||||||||||||    
T  42295262 taacaccaggggttgttgaccttctaca 42295289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 118 - 241
Target Start/End: Complemental strand, 19277418 - 19277295
Alignment:
Q  118 taaaagcggcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagc 217  Q
    ||||||| |||||||||||| | | ||||||| ||||||| ||||||||||||||||||| |||||||||||||| |||| | |||||||||||||||||    
T  19277418 taaaagctgcgtcaagcaaagtagccaaacatgagaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacactttcggtttcctagc 19277319  T
Q  218 accagggattgttgaccttctaca 241  Q
    ||||| | ||||||||||||||||    
T  19277318 accagaggttgttgaccttctaca 19277295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 116 - 241
Target Start/End: Complemental strand, 983076 - 982951
Alignment:
Q  116 cataaaagcggcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttccta 215  Q
    ||||||||| |||||||||||| ||| ||||||| ||||| | ||||||||||||||||||| |||||||||||||| |||| ||||||||||||| |||    
T  983076 cataaaagctgcgtcaagcaaagtggccaaacatgagaaatcgtgttctgacaatcaacatgcttttataccatttgcttttgatactttcggttttcta 982977  T
Q  216 gcaccagggattgttgaccttctaca 241  Q
    ||||||| | |||||| |||||||||    
T  982976 gcaccagaggttgttggccttctaca 982951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 118 - 237
Target Start/End: Original strand, 30216040 - 30216159
Alignment:
Q  118 taaaagcggcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagc 217  Q
    ||||||| ||||||||||||||||||||| || ||||||| |||| ||||||||||||||||||||||||||||| |||| | |||||||||||||||||    
T  30216040 taaaagctgcgtcaagcaaaatggtcaaatatgagaaagcgtgttttgacaatcaacatgtttttataccatttgcttttgacactttcggtttcctagc 30216139  T
Q  218 accagggattgttgaccttc 237  Q
    | ||| | ||||||| ||||    
T  30216140 atcagagtttgttgatcttc 30216159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 118 - 241
Target Start/End: Original strand, 21326820 - 21326943
Alignment:
Q  118 taaaagcggcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagc 217  Q
    ||||||| |||||||||||| ||| ||||||| ||||||| ||||||||||||||||||| |||||||||||||| |||| | ||||||| |||||||||    
T  21326820 taaaagccgcgtcaagcaaagtggccaaacatgagaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacactttcgatttcctagc 21326919  T
Q  218 accagggattgttgaccttctaca 241  Q
    ||||| |  |||||||||| ||||    
T  21326920 accagaggctgttgaccttttaca 21326943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 118 - 241
Target Start/End: Complemental strand, 22198111 - 22197988
Alignment:
Q  118 taaaagcggcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagc 217  Q
    |||||||||||||||||||| ||  ||||||| ||||||  |||||  ||||||||||||||||||||||||||| ||||   |||||||||||||||||    
T  22198111 taaaagcggcgtcaagcaaagtgaccaaacatgagaaagtgtgttccaacaatcaacatgtttttataccatttgcttttgtcactttcggtttcctagc 22198012  T
Q  218 accagggattgttgaccttctaca 241  Q
    | ||| | ||||||||||||||||    
T  22198011 atcagaggttgttgaccttctaca 22197988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 118 - 241
Target Start/End: Original strand, 22239710 - 22239833
Alignment:
Q  118 taaaagcggcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagc 217  Q
    |||||||||||||||||||| ||  ||||||| ||||||  |||||  ||||||||||||||||||||||||||| ||||   |||||||||||||||||    
T  22239710 taaaagcggcgtcaagcaaagtgaccaaacatgagaaagtgtgttccaacaatcaacatgtttttataccatttgcttttgtcactttcggtttcctagc 22239809  T
Q  218 accagggattgttgaccttctaca 241  Q
    | ||| | ||||||||||||||||    
T  22239810 atcagaggttgttgaccttctaca 22239833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 132 - 241
Target Start/End: Original strand, 40726476 - 40726585
Alignment:
Q  132 agcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccagggattgttg 231  Q
    |||||| ||| ||||||||| |||   ||||||||||||||||||||||||||||||||||||||| | |||||||| ||| ||||| ||| | ||||||    
T  40726476 agcaaagtggccaaacataataaaatgtgttctgacaatcaacatgtttttataccatttgtttttgacactttcggcttcatagcatcagaggttgttg 40726575  T
Q  232 accttctaca 241  Q
    ||||||||||    
T  40726576 accttctaca 40726585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 118 - 241
Target Start/End: Complemental strand, 4501383 - 4501261
Alignment:
Q  118 taaaagcggcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagc 217  Q
    ||||||| ||||||| |||| ||| ||||||| ||||||| ||||||||||||||||||| |||||||  ||||| |||| | ||||| ||||| |||||    
T  4501383 taaaagctgcgtcaaacaaagtggccaaacatgagaaagcgtgttctgacaatcaacatgcttttatataatttgcttttgacacttt-ggttttctagc 4501285  T
Q  218 accagggattgttgaccttctaca 241  Q
    ||||| | ||||||||||||||||    
T  4501284 accagaggttgttgaccttctaca 4501261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 118 - 241
Target Start/End: Original strand, 28517269 - 28517392
Alignment:
Q  118 taaaagcggcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagc 217  Q
    ||||||| |||||||||||| ||| ||||||| ||||||| ||||  |||||||||||||||||||||||||||| |||| | ||||| |  ||||||||    
T  28517269 taaaagctgcgtcaagcaaagtggccaaacatgagaaagcgtgtttagacaatcaacatgtttttataccatttgcttttgacacttttgacttcctagc 28517368  T
Q  218 accagggattgttgaccttctaca 241  Q
    | ||| ||  ||||||||||||||    
T  28517369 atcagagacagttgaccttctaca 28517392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 32584715 - 32584605
Alignment:
Q  129 tcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccagggattg 228  Q
    |||| |||| ||||||||||| ||||| | ||||||||||||||| ||| ||||| |||||||| |||| | |||||  ||||||||||||||| | |||    
T  32584715 tcaaacaaagtggtcaaacatgagaaaacgtgttctgacaatcaagatgcttttacaccatttgcttttgacactttatgtttcctagcaccagaggttg 32584616  T
Q  229 ttgaccttcta 239  Q
    |||||||||||    
T  32584615 ttgaccttcta 32584605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 127 - 240
Target Start/End: Complemental strand, 2904481 - 2904368
Alignment:
Q  127 cgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccagggat 226  Q
    ||||||||||||| ||||||||| ||||||| ||||| ||||||||||||| ||||||| ||||||||| | | |  || || |||||||||| || | |    
T  2904481 cgtcaagcaaaatagtcaaacatgagaaagcatgttccgacaatcaacatgattttatatcatttgtttgtgacatgtttggcttcctagcactagaggt 2904382  T
Q  227 tgttgaccttctac 240  Q
    ||||||||||||||    
T  2904381 tgttgaccttctac 2904368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 118 - 241
Target Start/End: Complemental strand, 5825396 - 5825275
Alignment:
Q  118 taaaagcggcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagc 217  Q
    ||||||| || ||||||||| ||  ||||||| | || || |||| ||||||||||||||||||||||||||||  |||| | ||||||||  |||||||    
T  5825396 taaaagctgcatcaagcaaagtg--caaacatgacaatgcgtgttatgacaatcaacatgtttttataccatttacttttgacactttcggcatcctagc 5825299  T
Q  218 accagggattgttgaccttctaca 241  Q
    ||||| | ||||||||||||||||    
T  5825298 accagaggttgttgaccttctaca 5825275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 118 - 241
Target Start/End: Complemental strand, 24527714 - 24527591
Alignment:
Q  118 taaaagcggcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagc 217  Q
    ||||||| | |||||| ||| |||  |||||| ||||| | ||||||||||||||||||| |||||||||||||| |||| | |||||| ||||||||||    
T  24527714 taaaagcagtgtcaagtaaagtgggaaaacatgagaaaacgtgttctgacaatcaacatgcttttataccatttgcttttgacactttcagtttcctagc 24527615  T
Q  218 accagggattgttgaccttctaca 241  Q
    || || |   ||||||||||||||    
T  24527614 acgagaggcggttgaccttctaca 24527591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 134 - 241
Target Start/End: Complemental strand, 27521580 - 27521473
Alignment:
Q  134 caaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccagggattgttgac 233  Q
    |||| ||||||||||| ||||| | |||||||||||||||||||  ||||||| ||||  |||| | ||||| |||||||||||| ||| | ||||||||    
T  27521580 caaagtggtcaaacatgagaaaacgtgttctgacaatcaacatgcatttatacaatttacttttgacacttttggtttcctagcatcagaggttgttgac 27521481  T
Q  234 cttctaca 241  Q
    ||||||||    
T  27521480 cttctaca 27521473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 159 - 222
Target Start/End: Original strand, 45613865 - 45613928
Alignment:
Q  159 tgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccag 222  Q
    |||||||||||||||||||||||||||||||||| |||| | ||||||||||||| ||||||||    
T  45613865 tgttctgacaatcaacatgtttttataccatttgattttgacactttcggtttccaagcaccag 45613928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 118 - 197
Target Start/End: Complemental strand, 3676764 - 3676685
Alignment:
Q  118 taaaagcggcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttt 197  Q
    ||||||| |||||||||||| ||||||||||| ||||||| |||||| || ||||| ||| |||||||||||||| ||||    
T  3676764 taaaagctgcgtcaagcaaagtggtcaaacatcagaaagcgtgttcttactatcaatatgcttttataccatttgctttt 3676685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 118 - 241
Target Start/End: Complemental strand, 10905242 - 10905120
Alignment:
Q  118 taaaagcggcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagc 217  Q
    ||||||| |||||||||||| ||| |||| || |||||   |||||||||| |||||||| ||| |||||||||| |||| | ||||| |||| ||||||    
T  10905242 taaaagctgcgtcaagcaaagtggccaaatatgagaaaaagtgttctgacactcaacatgcttt-ataccatttgcttttgacacttttggttgcctagc 10905144  T
Q  218 accagggattgttgaccttctaca 241  Q
    ||||| |  |||||||||||||||    
T  10905143 accagagtatgttgaccttctaca 10905120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 146 - 241
Target Start/End: Complemental strand, 43856971 - 43856876
Alignment:
Q  146 acataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccagggattgttgaccttctaca 241  Q
    |||| ||||||| |||| ||||||||||||||  ||||||| ||||| |||| | | ||| ||||||||| |||||| | ||||||||||||||||    
T  43856971 acatgagaaagcgtgttttgacaatcaacatgcgtttatacaatttgcttttgacatttttggtttcctaacaccagaggttgttgaccttctaca 43856876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 163 - 222
Target Start/End: Complemental strand, 48539261 - 48539202
Alignment:
Q  163 ctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccag 222  Q
    ||||||||||||||| |||||||||||||| |||| | ||||||||||| ||||||||||    
T  48539261 ctgacaatcaacatgcttttataccatttgcttttgacactttcggttttctagcaccag 48539202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 241
Target Start/End: Original strand, 9281114 - 9281236
Alignment:
Q  118 taaaagcggcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagc 217  Q
    ||||||| || ||||||||| | | ||||||| ||||||| |||||| |||||||||||| |||||||| |||||  ||| | | |||  | ||||||||    
T  9281114 taaaagctgcatcaagcaaactag-caaacatgagaaagcgtgttctaacaatcaacatgcttttatactatttggatttgacattttttgcttcctagc 9281212  T
Q  218 accagggattgttgaccttctaca 241  Q
    |||||   ||||||||||||||||    
T  9281213 accagatgttgttgaccttctaca 9281236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 241
Target Start/End: Original strand, 9292085 - 9292207
Alignment:
Q  118 taaaagcggcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagc 217  Q
    ||||||| || ||||||||| | | ||||||| ||||||| |||||| |||||||||||| |||||||| |||||  ||| | | |||  | ||||||||    
T  9292085 taaaagctgcatcaagcaaactag-caaacatgagaaagcgtgttctaacaatcaacatgcttttatactatttggatttgacattttttgcttcctagc 9292183  T
Q  218 accagggattgttgaccttctaca 241  Q
    |||||   ||||||||||||||||    
T  9292184 accagatgttgttgaccttctaca 9292207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 197
Target Start/End: Original strand, 25186928 - 25186997
Alignment:
Q  128 gtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttt 197  Q
    |||||| ||| ||||| ||||| ||||||| ||||| || ||||||||||||||| ||||||||| ||||    
T  25186928 gtcaagtaaagtggtctaacatgagaaagcgtgttccgataatcaacatgtttttctaccatttgctttt 25186997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 118 - 241
Target Start/End: Original strand, 37132981 - 37133104
Alignment:
Q  118 taaaagcggcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagc 217  Q
    |||||||  ||||||||||| |||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  37132981 taaaagctacgtcaagcaaagtggttaaacatgagaaagcgtgttctgacaatcaacatgtttttataccatttgttttttacactttcggtttcttagc 37133080  T
Q  218 accagggattgttgaccttctaca 241  Q
    ||||| | ||||||||||||||||    
T  37133081 accagaggttgttgaccttctaca 37133104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 120 - 241
Target Start/End: Complemental strand, 53785832 - 53785711
Alignment:
Q  120 aaagcggcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcac 219  Q
    ||||| |||||||| ||  ||| ||||||  ||||||| ||||||||||||||||||| |||||||||||||| |||| | |||||||||||||||||||    
T  53785832 aaagccgcgtcaagtaaggtggccaaacacgagaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacactttcggtttcctagcac 53785733  T
Q  220 cagggattgttgaccttctaca 241  Q
    ||| | ||||||||||||||||    
T  53785732 cagaggttgttgaccttctaca 53785711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 118 - 238
Target Start/End: Original strand, 39583211 - 39583331
Alignment:
Q  118 taaaagcggcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagc 217  Q
    ||||||| |||||||||||| ||| ||||||| ||||||| ||||||||||||||||||| ||||||| ||||||||||  | |||||||||||||||||    
T  39583211 taaaagctgcgtcaagcaaagtggccaaacatgagaaagcgtgttctgacaatcaacatgcttttatatcatttgttttcgacactttcggtttcctagc 39583310  T
Q  218 accagggattgttgaccttct 238  Q
    | ||  | |||||||||||||    
T  39583311 atcataggttgttgaccttct 39583331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 126 - 241
Target Start/End: Complemental strand, 7900975 - 7900860
Alignment:
Q  126 gcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccaggga 225  Q
    |||||||||||||| | | ||||| ||||||| | ||||||||||||||||| ||||||||||||||||||| | |||||||| ||||||||| ||| |     
T  7900975 gcgtcaagcaaaatagccgaacatgagaaagcgttttctgacaatcaacatgcttttataccatttgtttttgacactttcggcttcctagcatcagagg 7900876  T
Q  226 ttgttgaccttctaca 241  Q
    ||||||||||||||||    
T  7900875 ttgttgaccttctaca 7900860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 118 - 241
Target Start/End: Complemental strand, 13582634 - 13582512
Alignment:
Q  118 taaaagcggcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagc 217  Q
    ||||||| ||||||| |||| || |||||||||||||||  |||||||||||||||| |||||||||||||||||| ||||| ||||| | |||||||||    
T  13582634 taaaagctgcgtcaatcaaagtgatcaaacataagaaagtgtgttctgacaatcaacgtgtttttataccatttgt-ttttacacttttgatttcctagc 13582536  T
Q  218 accagggattgttgaccttctaca 241  Q
    ||||   |||||||||||||||||    
T  13582535 accaacaattgttgaccttctaca 13582512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 143 - 241
Target Start/End: Original strand, 52741519 - 52741617
Alignment:
Q  143 caaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccagggattgttgaccttctaca 241  Q
    ||||||| ||||||| ||||||||||||||||||| |||||||||||||| |||| | ||||| |||||||||||||||| | ||||||||||||||||    
T  52741519 caaacatgagaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacacttttggtttcctagcaccagaggttgttgaccttctaca 52741617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 143 - 240
Target Start/End: Complemental strand, 49018063 - 49017966
Alignment:
Q  143 caaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccagggattgttgaccttctac 240  Q
    ||||||| ||||||  |||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||| | | ||||||| |||||||    
T  49018063 caaacatgagaaagtgtgttctaacaatcaacatgtttttataccattttttttttacactttcggtttcctagcacccgaggttgttgatcttctac 49017966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 126 - 241
Target Start/End: Complemental strand, 44198884 - 44198769
Alignment:
Q  126 gcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccaggga 225  Q
    |||||||||||| ||| ||||||| ||||||| |||||||| |||||||||| |||||||||||||| |||| | |||||||||||| || |||| | |     
T  44198884 gcgtcaagcaaagtggccaaacatgagaaagcgtgttctgagaatcaacatgcttttataccatttgcttttgacactttcggtttcttaacacccgagg 44198785  T
Q  226 ttgttgaccttctaca 241  Q
     |||||||||||||||    
T  44198784 ctgttgaccttctaca 44198769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 128 - 241
Target Start/End: Original strand, 7502003 - 7502117
Alignment:
Q  128 gtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttt-tataccatttgttttttatactttcggtttcctagcaccagggat 226  Q
    |||||| ||| ||||||||||| ||||||| |||||  |||||||||||||||| ||||||||||  |||| | | ||| |||||||||||||||| | |    
T  7502003 gtcaagtaaagtggtcaaacatgagaaagcgtgttcgaacaatcaacatgttttttataccattttcttttgacatttttggtttcctagcaccagaggt 7502102  T
Q  227 tgttgaccttctaca 241  Q
    |||||||||||||||    
T  7502103 tgttgaccttctaca 7502117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 129 - 241
Target Start/End: Original strand, 26856755 - 26856867
Alignment:
Q  129 tcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccagggattg 228  Q
    ||||| |||||||||||| || | ||||| |||| |||||||||||||| ||||||||||| || |||| |  |||||| ||||||||||| || || ||    
T  26856755 tcaagtaaaatggtcaaatatgataaagcgtgttgtgacaatcaacatgcttttataccatctgcttttgacgctttcgatttcctagcactagagactg 26856854  T
Q  229 ttgaccttctaca 241  Q
    |||||||||||||    
T  26856855 ttgaccttctaca 26856867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 126 - 241
Target Start/End: Original strand, 3443302 - 3443417
Alignment:
Q  126 gcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccaggga 225  Q
    |||||||||||||||| ||||||| | ||||  | |||| |||||||||||| |||||||||||||  | || | |||||| |||||||||||| || |     
T  3443302 gcgtcaagcaaaatggccaaacatgaaaaagtgtattctaacaatcaacatgcttttataccattttctgttgacactttcagtttcctagcactagagg 3443401  T
Q  226 ttgttgaccttctaca 241  Q
    ||||||||||||||||    
T  3443402 ttgttgaccttctaca 3443417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 128 - 239
Target Start/End: Complemental strand, 26772873 - 26772762
Alignment:
Q  128 gtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccagggatt 227  Q
    |||||||||| ||| ||||||| ||||| | ||||||||||||||||||| |||||||||||||| |||| | ||||| || ||||||||| ||| |       
T  26772873 gtcaagcaaagtggccaaacatcagaaaacgtgttctgacaatcaacatgcttttataccatttgcttttgacacttttggcttcctagcatcagaggca 26772774  T
Q  228 gttgaccttcta 239  Q
    ||||||||||||    
T  26772773 gttgaccttcta 26772762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 143 - 241
Target Start/End: Complemental strand, 32546895 - 32546797
Alignment:
Q  143 caaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccagggattgttgaccttctaca 241  Q
    ||||||| ||||||| ||||| ||||||||||||  |||||||||||||| |||| | |||||| ||||||||||||||  |  |||||||||||||||    
T  32546895 caaacatgagaaagcgtgttcggacaatcaacatacttttataccatttgcttttgacactttcagtttcctagcaccaaaggctgttgaccttctaca 32546797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 126 - 221
Target Start/End: Original strand, 46940760 - 46940855
Alignment:
Q  126 gcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcacca 221  Q
    |||||||||||| ||| ||||||| ||||| | ||||| ||||||||||||| ||||||||||||||||||| | ||||| |   |||||||||||    
T  46940760 gcgtcaagcaaagtggccaaacattagaaaacatgttccgacaatcaacatgcttttataccatttgtttttgacacttttgacgtcctagcacca 46940855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 141 - 218
Target Start/End: Original strand, 38670885 - 38670962
Alignment:
Q  141 gtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagca 218  Q
    ||||||||| ||||||| ||||||||||||||||||| |||||||| |||||||||| | ||||| || || ||||||    
T  38670885 gtcaaacatgagaaagcgtgttctgacaatcaacatgcttttatacaatttgtttttgacacttttggctttctagca 38670962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 126 - 238
Target Start/End: Original strand, 54508373 - 54508486
Alignment:
Q  126 gcgtcaagcaaaatggtcaaacataagaaag-cttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccaggg 224  Q
    ||||||| ||||||||  |||||| |||||  |||||||||||||| |||||||||||||| |||||| |||| | | ||| | ||| |||||||||| |    
T  54508373 gcgtcaaacaaaatggctaaacatgagaaaaacttgttctgacaattaacatgtttttatatcatttgcttttgacatttttgattttctagcaccagag 54508472  T
Q  225 attgttgaccttct 238  Q
     |||||||||||||    
T  54508473 gttgttgaccttct 54508486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 222
Target Start/End: Complemental strand, 4473178 - 4473082
Alignment:
Q  126 gcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccag 222  Q
    |||||||||||| ||   |||||| | ||||| |||||| || ||||| |||||||||||| |||||||||| | |||||||| |||||||||||||    
T  4473178 gcgtcaagcaaagtgtcaaaacatgaaaaagcgtgttctaaccatcaatatgtttttatactatttgtttttgacactttcggcttcctagcaccag 4473082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 241
Target Start/End: Complemental strand, 51234718 - 51234618
Alignment:
Q  141 gtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccagggattgttgaccttctac 240  Q
    ||||||||| | ||||| |||| |||||| ||||||| ||||||||||||| ||||| | |||||||  || |||||| ||| | |||||||||||||||    
T  51234718 gtcaaacatgaaaaagcatgttatgacaaccaacatgcttttataccatttatttttgacactttcgactttctagcatcagaggttgttgaccttctac 51234619  T
Q  241 a 241  Q
    |    
T  51234618 a 51234618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 241
Target Start/End: Complemental strand, 25325097 - 25325031
Alignment:
Q  175 atgtttttataccatttgttttttatactttcggtttcctagcaccagggattgttgaccttctaca 241  Q
    |||||||||||||||||| |||  | ||||||| |||||||||||||  ||||||||||||||||||    
T  25325097 atgtttttataccatttgctttcaacactttcgatttcctagcaccatagattgttgaccttctaca 25325031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 164 - 246
Target Start/End: Original strand, 38978827 - 38978909
Alignment:
Q  164 tgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccagggattgttgaccttctacacatag 246  Q
    |||||||||| |||||||||||| |||||||||| | ||||| |||||||||||||| | |   |||||||||||||| ||||    
T  38978827 tgacaatcaatatgtttttatactatttgtttttgacacttttggtttcctagcacctgaggccgttgaccttctacatatag 38978909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 241
Target Start/End: Complemental strand, 37992432 - 37992334
Alignment:
Q  143 caaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccagggattgttgaccttctaca 241  Q
    ||||||| || |||| ||||||||||||||||||| ||||||| |||||  |||| ||  ||| || ||| |||||| || | ||||||||||||||||    
T  37992432 caaacatgaggaagcatgttctgacaatcaacatgattttatatcatttacttttgatggttttggcttcatagcactagaggttgttgaccttctaca 37992334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 118 - 240
Target Start/End: Complemental strand, 38146181 - 38146059
Alignment:
Q  118 taaaagcggcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagc 217  Q
    |||||||||| |||| |||| |||||||||   ||| | | |||| ||||||||||||||||||||||||||||   ||| | ||||| |  ||||||||    
T  38146181 taaaagcggcatcaatcaaagtggtcaaacgcgagacaacgtgttttgacaatcaacatgtttttataccatttacatttgacacttttgacttcctagc 38146082  T
Q  218 accagggattgttgaccttctac 240  Q
    ||||| | ||||| || ||||||    
T  38146081 accagaggttgtttacattctac 38146059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 241
Target Start/End: Complemental strand, 21552746 - 21552670
Alignment:
Q  164 tgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccagggattgttgaccttctaca 241  Q
    |||||||||||||| ||| ||||||||| ||||| | | |||| ||||||||||| ||| || |||||||||||||||    
T  21552746 tgacaatcaacatgcttt-ataccatttatttttgacattttcagtttcctagcatcagagactgttgaccttctaca 21552670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 241
Target Start/End: Original strand, 3376730 - 3376846
Alignment:
Q  126 gcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttt-tataccatttgttttttatactttcggtttcctagcaccaggg 224  Q
    |||||||| |||||||| |||||| | ||| | | |||| ||||||||||| |||| || |||||||| |||| |   ||| ||||||||||||| || |    
T  3376730 gcgtcaagaaaaatggttaaacatgataaaacatattctcacaatcaacatattttatagaccatttgcttttgacttttttggtttcctagcactagag 3376829  T
Q  225 attgttgaccttctaca 241  Q
     ||||||||||||||||    
T  3376830 gttgttgaccttctaca 3376846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 179
Target Start/End: Original strand, 45676778 - 45676830
Alignment:
Q  127 cgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtt 179  Q
    ||||||||||| ||  ||| ||||||||| | |||||||||||||||||||||    
T  45676778 cgtcaagcaaagtgaccaagcataagaaaacgtgttctgacaatcaacatgtt 45676830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 118 - 241
Target Start/End: Original strand, 4413048 - 4413171
Alignment:
Q  118 taaaagcggcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagc 217  Q
    ||||||| | |||||||||| ||| ||||||| ||||||| ||||||||||||||||||| |||||||||||||| |||| | |||||||||||||||||    
T  4413048 taaaagctgtgtcaagcaaagtggccaaacatgagaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacactttcggtttcctagc 4413147  T
Q  218 accagggattgttgaccttctaca 241  Q
    ||||| ||||||||||||||||||    
T  4413148 accagagattgttgaccttctaca 4413171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 118 - 241
Target Start/End: Original strand, 41867890 - 41868013
Alignment:
Q  118 taaaagcggcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagc 217  Q
    ||||||| |||||||||||| ||||||||||| ||||||| ||||||||||||||||||| |||||||||||||| |||| | |||||||| ||||||||    
T  41867890 taaaagctgcgtcaagcaaagtggtcaaacatgagaaagcatgttctgacaatcaacatgcttttataccatttgcttttgacactttcgggttcctagc 41867989  T
Q  218 accagggattgttgaccttctaca 241  Q
    ||||| |  |||||||||||||||    
T  41867990 accagaggctgttgaccttctaca 41868013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 118 - 241
Target Start/End: Complemental strand, 28225125 - 28225002
Alignment:
Q  118 taaaagcggcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagc 217  Q
    ||||||| |||||||||||| ||  |||| || ||||||| | ||||||||||||||||| |||||||||||||| |||| | |||||||| ||||||||    
T  28225125 taaaagctgcgtcaagcaaagtgaccaaatatgagaaagcgtattctgacaatcaacatgcttttataccatttgcttttgacactttcggcttcctagc 28225026  T
Q  218 accagggattgttgaccttctaca 241  Q
      ||| | ||||||||||||||||    
T  28225025 ttcagaggttgttgaccttctaca 28225002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 126 - 243
Target Start/End: Complemental strand, 2888633 - 2888516
Alignment:
Q  126 gcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccaggga 225  Q
    ||||| |||||| ||| ||||||| ||||| | |||||||||||||||||||||||||||||||| |||| | | ||||| || |||||| ||| || |     
T  2888633 gcgtctagcaaagtggacaaacatgagaaaacgtgttctgacaatcaacatgtttttataccattcgtttatgacacttttggcttcctaacacaagagg 2888534  T
Q  226 ttgttgaccttctacaca 243  Q
    ||||||||||||||||||    
T  2888533 ttgttgaccttctacaca 2888516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 126 - 238
Target Start/End: Original strand, 13147087 - 13147202
Alignment:
Q  126 gcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgt---ttttataccatttgttttttatactttcggtttcctagcaccag 222  Q
    |||||||| ||| ||||||||||| ||||||| |||||||||||||| ||| |   |||||||||||||| |||| | ||||| ||||| ||| ||||||    
T  13147087 gcgtcaagaaaagtggtcaaacatgagaaagcgtgttctgacaatcagcatatactttttataccatttgattttgacacttttggttttctaacaccag 13147186  T
Q  223 ggattgttgaccttct 238  Q
     |||||||||||||||    
T  13147187 agattgttgaccttct 13147202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 126 - 211
Target Start/End: Original strand, 19161773 - 19161858
Alignment:
Q  126 gcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggttt 211  Q
    |||||||| ||| ||| ||||||| | ||||| |||||||||||||||||||||||||||||||||| |||| | |||||||||||    
T  19161773 gcgtcaagaaaagtgggcaaacatgaaaaagcgtgttctgacaatcaacatgtttttataccatttgcttttgacactttcggttt 19161858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 118 - 222
Target Start/End: Original strand, 23484920 - 23485023
Alignment:
Q  118 taaaagcggcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagc 217  Q
    |||||||  |||||| |||| ||| |||| || ||||||| ||||||||||||||||||| ||||||||||||||||||| | || ||| ||||||||||    
T  23484920 taaaagctacgtcaaacaaagtggccaaatatgagaaagcatgttctgacaatcaacatgcttttataccatttgtttttgacac-ttctgtttcctagc 23485018  T
Q  218 accag 222  Q
    |||||    
T  23485019 accag 23485023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 142 - 241
Target Start/End: Original strand, 34814825 - 34814923
Alignment:
Q  142 tcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccagggattgttgaccttctaca 241  Q
    |||||||| ||||||| ||||||||||||||| ||| |||||||||||||| |||  | |||||||| |||||| |||||| || |||||||||||||||    
T  34814825 tcaaacatgagaaagcgtgttctgacaatcaatatgcttttataccatttgctttcgacactttcgg-ttcctaacaccagagactgttgaccttctaca 34814923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 126 - 219
Target Start/End: Original strand, 9685405 - 9685498
Alignment:
Q  126 gcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcac 219  Q
    |||||||||||| ||| ||||||| | ||||| ||||||||||||||||||| |||||||||||||| |||| | ||||| | ||| |||||||    
T  9685405 gcgtcaagcaaagtggccaaacatgaaaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacacttttgattttctagcac 9685498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 159 - 218
Target Start/End: Original strand, 2886638 - 2886697
Alignment:
Q  159 tgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagca 218  Q
    ||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||| ||||    
T  2886638 tgttctgacaatcaacatgtttttatatcatttgtttttgatattttcggtttccaagca 2886697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 118 - 241
Target Start/End: Complemental strand, 5532544 - 5532422
Alignment:
Q  118 taaaagcggcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagc 217  Q
    ||||||| |||||||||||| ||||||||||| ||||| | |||| |||||||||||||| |||||||| ||||  |||| | |||||  | ||||||||    
T  5532544 taaaagctgcgtcaagcaaagtggtcaaacatgagaaaacgtgttgtgacaatcaacatgcttttatactatttacttttgacacttt-agcttcctagc 5532446  T
Q  218 accagggattgttgaccttctaca 241  Q
    ||||  | ||||||| ||||||||    
T  5532445 accataggttgttgagcttctaca 5532422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 118 - 241
Target Start/End: Complemental strand, 27502487 - 27502364
Alignment:
Q  118 taaaagcggcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagc 217  Q
    ||||||| |||||||||||| ||||||||||| ||||| | ||||| ||||| ||||||| |||||||| |||  ||||| | |||||||  ||||||||    
T  27502487 taaaagctgcgtcaagcaaagtggtcaaacatgagaaaacgtgttccgacaaacaacatgcttttatacaattgctttttgacactttcgacttcctagc 27502388  T
Q  218 accagggattgttgaccttctaca 241  Q
    | ||   | |||||||||||||||    
T  27502387 atcatatactgttgaccttctaca 27502364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 206
Target Start/End: Original strand, 11921218 - 11921280
Alignment:
Q  144 aaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttc 206  Q
    |||||| ||||| | |||||||||||||||||| |||||||||| ||||||||||||||||||    
T  11921218 aaacattagaaaacgtgttctgacaatcaacatatttttataccgtttgttttttatactttc 11921280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 120 - 241
Target Start/End: Complemental strand, 17344761 - 17344640
Alignment:
Q  120 aaagcggcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcac 219  Q
    ||||| |||||||| ||  ||| ||||||  ||||| | |||| | |||||||||||| |||||||||||||| |||| | |||||| ||||||||||||    
T  17344761 aaagctgcgtcaagtaaggtggccaaacacgagaaaacgtgttttcacaatcaacatgcttttataccatttgcttttgacactttcagtttcctagcac 17344662  T
Q  220 cagggattgttgaccttctaca 241  Q
    ||  |  |||||||||||||||    
T  17344661 cataggctgttgaccttctaca 17344640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 118 - 198
Target Start/End: Original strand, 1296032 - 1296112
Alignment:
Q  118 taaaagcggcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgtttttt 198  Q
    ||||||| ||||||| |||||||| ||||||| |||||   |||||||||||| |||||||||||||||| ||| ||||||    
T  1296032 taaaagctgcgtcaaacaaaatggccaaacatgagaaaatatgttctgacaataaacatgtttttataccttttttttttt 1296112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 130 - 241
Target Start/End: Original strand, 33612542 - 33612652
Alignment:
Q  130 caagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccagggattgt 229  Q
    ||||||||||||| |||||| ||||| | |||| |||||||||||||| |||||||| |||||| ||| | ||||| || |||||| |||| | | ||||    
T  33612542 caagcaaaatggt-aaacatgagaaaacgtgttttgacaatcaacatgattttatacaatttgtatttgacacttttggcttcctaacaccggaggttgt 33612640  T
Q  230 tgaccttctaca 241  Q
    |||| |||||||    
T  33612641 tgacattctaca 33612652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 151 - 221
Target Start/End: Original strand, 18744969 - 18745039
Alignment:
Q  151 agaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcacca 221  Q
    ||||||| ||||||||||||||||||  |||||||||||||| |||| | | ||||| ||| |||||||||    
T  18744969 agaaagcgtgttctgacaatcaacatacttttataccatttgcttttgacattttcgattttctagcacca 18745039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 118 - 192
Target Start/End: Complemental strand, 44720448 - 44720374
Alignment:
Q  118 taaaagcggcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttg 192  Q
    ||||||| |||||||| || |||| ||||||| | ||| | |||| |||||||||||||||||||||||| ||||    
T  44720448 taaaagccgcgtcaagtaagatggccaaacatgaaaaaacgtgttatgacaatcaacatgtttttataccgtttg 44720374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 237
Target Start/End: Complemental strand, 3825852 - 3825732
Alignment:
Q  118 taaaagcggcgtcaagcaaaatggtcaaacataagaaagcttgtt-ctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctag 216  Q
    ||||||| |||||||||||| ||||||||||| | |||| || || ||||||||| ||||||||||||  |||||| ||   | ||||||  ||||||||    
T  3825852 taaaagctgcgtcaagcaaagtggtcaaacatgaaaaagttttttcctgacaatctacatgtttttatttcatttgcttcagacactttcaatttcctag 3825753  T
Q  217 caccagggattgttgaccttc 237  Q
    || ||  | ||||||||||||    
T  3825752 catcaaaggttgttgaccttc 3825732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 241
Target Start/End: Complemental strand, 44686535 - 44686418
Alignment:
Q  128 gtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaa----catgtttttataccatttgttttttatactttcggtttcctagcaccagg 223  Q
    |||||||||  ||| ||||||| ||||||| |||||||||||||||    |||| |||||||   || | |||| | |||||||| ||||||||| |||     
T  44686535 gtcaagcaatgtggccaaacatgagaaagcgtgttctgacaatcaatcaacatgcttttatattgttcgcttttgacactttcggcttcctagcatcaga 44686436  T
Q  224 gattgttgaccttctaca 241  Q
    | ||||||||||||||||    
T  44686435 gtttgttgaccttctaca 44686418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 241
Target Start/End: Original strand, 20142753 - 20142830
Alignment:
Q  164 tgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccagggattgttgaccttctaca 241  Q
    |||||||||||||| |||||||||||||  |||| | ||||| ||||| |||||| ||  | ||||||||||| ||||    
T  20142753 tgacaatcaacatgcttttataccattttcttttgacacttttggttttctagcatcaaaggttgttgaccttataca 20142830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 118 - 243
Target Start/End: Complemental strand, 132510 - 132385
Alignment:
Q  118 taaaagcggcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagc 217  Q
    ||||||| ||||||||||||||||  |||||| ||||| | ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||      
T  132510 taaaagctgcgtcaagcaaaatggcaaaacatgagaaatcgtgttctgacaatcaacatgcttttataccatttgttttttacactttcggtttcctaat 132411  T
Q  218 accagggattgttgaccttctacaca 243  Q
    | ||| |||||||||| |||||||||    
T  132410 atcagagattgttgacattctacaca 132385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 126 - 241
Target Start/End: Original strand, 56462097 - 56462211
Alignment:
Q  126 gcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccaggga 225  Q
    ||||||| |||| ||| ||||||| | ||||| ||||||||||||||||||||||||||||||||||||||  | ||||| |||||||||||||||| |     
T  56462097 gcgtcaaacaaagtgg-caaacatgataaagcgtgttctgacaatcaacatgtttttataccatttgttttagacacttttggtttcctagcaccagagg 56462195  T
Q  226 ttgttgaccttctaca 241  Q
    ||||||||||||||||    
T  56462196 ttgttgaccttctaca 56462211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 118 - 241
Target Start/End: Complemental strand, 53619711 - 53619588
Alignment:
Q  118 taaaagcggcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagc 217  Q
    ||||||| |||||||||||| ||| ||||||| ||||| | ||||||||||||||||||| ||||||||||||||||||| | ||||| |  ||||||||    
T  53619711 taaaagctgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgcttttataccatttgtttttgacacttttgacttcctagc 53619612  T
Q  218 accagggattgttgaccttctaca 241  Q
    | ||| |   ||||||||||||||    
T  53619611 atcagaggcagttgaccttctaca 53619588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 151 - 241
Target Start/End: Original strand, 50483211 - 50483301
Alignment:
Q  151 agaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccagggattgttgaccttctaca 241  Q
    ||||||| | ||||||||||||||||| |||||||||||||| |||  | |||||||||||||||||||||| | ||||||||||||||||    
T  50483211 agaaagcgtcttctgacaatcaacatgattttataccatttgctttcgacactttcggtttcctagcaccagaggttgttgaccttctaca 50483301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 118 - 218
Target Start/End: Complemental strand, 31847212 - 31847112
Alignment:
Q  118 taaaagcggcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagc 217  Q
    ||||||| |||||||||||| ||||||||||| ||||| | |||||||||| ||||||||||||| ||||||||| |||| | ||||| || ||||||||    
T  31847212 taaaagctgcgtcaagcaaagtggtcaaacatgagaaaccatgttctgacagtcaacatgtttttttaccatttgcttttgacacttttggcttcctagc 31847113  T
Q  218 a 218  Q
    |    
T  31847112 a 31847112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 126 - 241
Target Start/End: Original strand, 55933452 - 55933565
Alignment:
Q  126 gcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccaggga 225  Q
    ||||||| |||| ||| ||||||| |||||| ||||||| |||||||||||| |||||||||||||| |||| | |||||||  ||||||||| ||||      
T  55933452 gcgtcaaacaaagtggccaaacatgagaaagtttgttctaacaatcaacatgcttttataccatttgcttttgacactttcgacttcctagcatcagg-- 55933549  T
Q  226 ttgttgaccttctaca 241  Q
    ||||||||||||||||    
T  55933550 ttgttgaccttctaca 55933565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 159 - 241
Target Start/End: Original strand, 7536594 - 7536676
Alignment:
Q  159 tgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccagggattgttgaccttctaca 241  Q
    |||| ||||||||||||||||||||||| |||||||||| | | |||| ||||||||||||||| | ||||||||||||||||    
T  7536594 tgttttgacaatcaacatgtttttatacaatttgtttttgacaatttcagtttcctagcaccagaggttgttgaccttctaca 7536676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 126 - 220
Target Start/End: Original strand, 30940729 - 30940822
Alignment:
Q  126 gcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcacc 220  Q
    |||||||| ||| ||||||||||| ||||||| ||||||||||||||||||| |||||||||| ||| |||| | ||||||| ||||||||||||    
T  30940729 gcgtcaagtaaagtggtcaaacatgagaaagcgtgttctgacaatcaacatgcttttatacca-ttgcttttgacactttcgatttcctagcacc 30940822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 159 - 241
Target Start/End: Original strand, 34107719 - 34107801
Alignment:
Q  159 tgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccagggattgttgaccttctaca 241  Q
    ||||| || |||||||||||||||||||||||||||||| | ||||||| |||||||||||||| |  |||||||||||||||    
T  34107719 tgttcagataatcaacatgtttttataccatttgtttttgacactttcgatttcctagcaccagaggctgttgaccttctaca 34107801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 128 - 241
Target Start/End: Original strand, 600684 - 600797
Alignment:
Q  128 gtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccagggatt 227  Q
    |||||||||| ||  ||||||| ||||| | |||||| ||||| |||||| |||||||||||||| ||||   ||||||||||||||| |||||| | ||    
T  600684 gtcaagcaaagtgaccaaacatgagaaaacgtgttctaacaattaacatgcttttataccatttgcttttgtcactttcggtttcctaacaccagaggtt 600783  T
Q  228 gttgaccttctaca 241  Q
    ||||||||||||||    
T  600784 gttgaccttctaca 600797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 126 - 239
Target Start/End: Original strand, 12918362 - 12918475
Alignment:
Q  126 gcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccaggga 225  Q
    ||||||| |||| ||||||||||||||||| | |||||||||||||||||   |||||||| ||||  |||| | |||||||  ||||||||| ||| ||    
T  12918362 gcgtcaaacaaagtggtcaaacataagaaatcgtgttctgacaatcaacacacttttatactatttacttttgacactttcgacttcctagcatcagaga 12918461  T
Q  226 ttgttgaccttcta 239  Q
    ||||||||||||||    
T  12918462 ttgttgaccttcta 12918475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 118 - 246
Target Start/End: Original strand, 50000907 - 50001036
Alignment:
Q  118 taaaagcggcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatg-tttttataccatttgttttttatactttcggtttcctag 216  Q
    ||||||| |||||||||||| ||||||||||| ||||||| ||||||||||||||||||| |||| |||| ||||| |||| | ||||| || || ||||    
T  50000907 taaaagctgcgtcaagcaaagtggtcaaacatgagaaagcgtgttctgacaatcaacatgcttttaatacaatttgcttttgacacttttggctttctag 50001006  T
Q  217 caccagggattgttgaccttctacacatag 246  Q
    || ||| |   |||||||||||||| ||||    
T  50001007 catcagaggcagttgaccttctacatatag 50001036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 126 - 197
Target Start/End: Complemental strand, 23255821 - 23255750
Alignment:
Q  126 gcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttt 197  Q
    |||||||||||| ||| ||||||| ||||||| |||||||||||| |||||| |||||||||||||||||||    
T  23255821 gcgtcaagcaaagtggccaaacatgagaaagcgtgttctgacaattaacatgcttttataccatttgttttt 23255750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 136 - 236
Target Start/End: Complemental strand, 25504402 - 25504302
Alignment:
Q  136 aaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccagggattgttgacct 235  Q
    |||||||||||||| ||||| | |||||| |||||| ||||||||||||||| |||| |||| | | ||| ||||||||||||| || || |||||||||    
T  25504402 aaatggtcaaacatgagaaaacgtgttctaacaatcgacatgtttttataccgtttgcttttgacatttttggtttcctagcactagagactgttgacct 25504303  T
Q  236 t 236  Q
    |    
T  25504302 t 25504302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 128 - 191
Target Start/End: Original strand, 45386053 - 45386116
Alignment:
Q  128 gtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccattt 191  Q
    |||||| ||| ||||||||||||||||||| |||||||||||||||  | ||||||||||||||    
T  45386053 gtcaaggaaagtggtcaaacataagaaagcgtgttctgacaatcaatttctttttataccattt 45386116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 127 - 218
Target Start/End: Original strand, 46440880 - 46440971
Alignment:
Q  127 cgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagca 218  Q
    |||||| |||| ||||||||||||| ||||  |||||| ||||| |||| ||||||||| |||||| |||| | |||||||| |||||||||    
T  46440880 cgtcaaacaaagtggtcaaacataaaaaagtgtgttctaacaattaacacgtttttatatcatttgcttttgacactttcggcttcctagca 46440971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 129 - 207
Target Start/End: Original strand, 48656903 - 48656981
Alignment:
Q  129 tcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcg 207  Q
    ||||| ||||||| ||||||| ||||||  |||| || ||||||| ||||||||||||||||||||||| | |||||||    
T  48656903 tcaagtaaaatggacaaacatgagaaagtgtgttatgtcaatcaaaatgtttttataccatttgtttttgacactttcg 48656981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 126 - 240
Target Start/End: Original strand, 50462936 - 50463050
Alignment:
Q  126 gcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccaggga 225  Q
    ||||||||||| |||  ||||||| ||||||  | ||| ||||||||||||| ||| |||||||||| |||| | ||||| | ||||||  |||||| ||    
T  50462936 gcgtcaagcaagatgaccaaacatgagaaagtgtcttccgacaatcaacatgctttcataccatttgcttttgacacttttgatttccttacaccagaga 50463035  T
Q  226 ttgttgaccttctac 240  Q
     ||||||||||||||    
T  50463036 ctgttgaccttctac 50463050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 241
Target Start/End: Complemental strand, 26521605 - 26521490
Alignment:
Q  126 gcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccaggga 225  Q
    ||||||| |||| |||  |||||| | ||| | |||| |||||||||||||| ||||||| ||| || |||  | ||||| |||||||||||||||| |     
T  26521605 gcgtcaaacaaagtggctaaacatgaaaaaacgtgttatgacaatcaacatgcttttatatcatatgctttcaacacttttggtttcctagcaccagagg 26521506  T
Q  226 ttgttgaccttctaca 241  Q
     |||||||||||||||    
T  26521505 ctgttgaccttctaca 26521490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 241
Target Start/End: Complemental strand, 3330077 - 3329998
Alignment:
Q  162 tctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccagggattgttgaccttctaca 241  Q
    |||||||||||||||| |||||||| ||||| |||| | ||||| || ||||||||| ||| |   ||||||||||||||    
T  3330077 tctgacaatcaacatgcttttatactatttgcttttgacacttttggcttcctagcatcagaggcagttgaccttctaca 3329998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 193
Target Start/End: Complemental strand, 24720017 - 24719984
Alignment:
Q  160 gttctgacaatcaacatgtttttataccatttgt 193  Q
    |||||||||||||||||||||||||| |||||||    
T  24720017 gttctgacaatcaacatgtttttatatcatttgt 24719984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 216
Target Start/End: Complemental strand, 16957653 - 16957569
Alignment:
Q  132 agcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctag 216  Q
    |||||||||  ||||||| ||||||  || ||||| |||||||||| || ||||||||||| |||| | |||||| |||| ||||    
T  16957653 agcaaaatgaccaaacatgagaaagtgtgctctgataatcaacatgcttatataccatttgcttttgacactttcagttttctag 16957569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 241
Target Start/End: Complemental strand, 53098503 - 53098423
Alignment:
Q  161 ttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccagggattgttgaccttctaca 241  Q
    ||||||||||||||||||||||  ||| |||  |||| | | ||| |||||||||||| ||| | ||||| ||||||||||    
T  53098503 ttctgacaatcaacatgtttttgaaccgtttccttttgacatttttggtttcctagcatcagaggttgttaaccttctaca 53098423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 7e-33; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 126 - 241
Target Start/End: Original strand, 37873628 - 37873743
Alignment:
Q  126 gcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccaggga 225  Q
    |||||||||||| ||| ||||||| ||||||| |||||||||||||||||||||||||||||||||| |||| | ||||| || ||||||||||||| |     
T  37873628 gcgtcaagcaaagtggccaaacatgagaaagcgtgttctgacaatcaacatgtttttataccatttgcttttgacacttttggcttcctagcaccagagg 37873727  T
Q  226 ttgttgaccttctaca 241  Q
    ||||||||||||||||    
T  37873728 ttgttgaccttctaca 37873743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 126 - 241
Target Start/End: Original strand, 13166900 - 13167015
Alignment:
Q  126 gcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccaggga 225  Q
    |||||||||||| |||  |||||| ||||||| ||||||||||||||||||| |||||||||||||| |||| | |||||||| ||||||||| ||| ||    
T  13166900 gcgtcaagcaaagtggctaaacatgagaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacactttcggcttcctagcatcagaga 13166999  T
Q  226 ttgttgaccttctaca 241  Q
     |||||||||||||||    
T  13167000 ctgttgaccttctaca 13167015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 118 - 238
Target Start/End: Original strand, 32269779 - 32269899
Alignment:
Q  118 taaaagcggcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagc 217  Q
    ||||||| || |||| |||| ||||||||||| ||||||  ||||||||||||||||| | |||||||||||||| |||| ||||||||| |||||||||    
T  32269779 taaaagctgcatcaaccaaagtggtcaaacatgagaaagtgtgttctgacaatcaacacgcttttataccatttgcttttgatactttcgatttcctagc 32269878  T
Q  218 accagggattgttgaccttct 238  Q
    || || | |||||||||||||    
T  32269879 actagaggttgttgaccttct 32269899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 126 - 241
Target Start/End: Complemental strand, 43129651 - 43129536
Alignment:
Q  126 gcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccaggga 225  Q
    |||||||||||| ||||||||||| ||||| | |||||||||||||||||||||||| ||||||||| |||| | | ||||||||||||| ||||||       
T  43129651 gcgtcaagcaaagtggtcaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttgacattttcggtttcctaacaccagatg 43129552  T
Q  226 ttgttgaccttctaca 241  Q
    || |||||||||||||    
T  43129551 tttttgaccttctaca 43129536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 118 - 241
Target Start/End: Original strand, 15292008 - 15292131
Alignment:
Q  118 taaaagcggcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagc 217  Q
    |||||| |||||||| |||| ||| ||||||| ||||| | |||||||||||||||||||||||||||| |||||||||||| |||||  |||| |||||    
T  15292008 taaaagtggcgtcaaacaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttatacaatttgttttttacacttttagttttctagc 15292107  T
Q  218 accagggattgttgaccttctaca 241  Q
    || || | || |||| ||||||||    
T  15292108 actagaggttattgatcttctaca 15292131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 139 - 241
Target Start/End: Complemental strand, 42921801 - 42921699
Alignment:
Q  139 tggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccagggattgttgaccttct 238  Q
    ||||||||||  ||||| | ||||||||||||||||||| |||||||||||||| || | | |||||||||||||||||||||| | |||||| ||||||    
T  42921801 tggtcaaacacgagaaaacgtgttctgacaatcaacatgcttttataccatttgcttatgacactttcggtttcctagcaccagaggttgttggccttct 42921702  T
Q  239 aca 241  Q
    |||    
T  42921701 aca 42921699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 126 - 222
Target Start/End: Original strand, 26212573 - 26212669
Alignment:
Q  126 gcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccag 222  Q
    |||||||||||| ||| ||||||| ||||||| | ||||||| ||||||||| |||||||||||||||||||||  ||||| ||||| |||||||||    
T  26212573 gcgtcaagcaaagtggccaaacatgagaaagcgtattctgacgatcaacatgcttttataccatttgttttttaccctttcagtttcttagcaccag 26212669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 118 - 241
Target Start/End: Original strand, 25663014 - 25663137
Alignment:
Q  118 taaaagcggcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagc 217  Q
    ||||||| || |||| |||| ||| ||||||| ||||||| |||||||| ||||||||||||||||||||||||| |||| | |||||| | ||||||||    
T  25663014 taaaagctgcatcaaacaaagtggccaaacatgagaaagcgtgttctgataatcaacatgtttttataccatttgcttttgacactttcagcttcctagc 25663113  T
Q  218 accagggattgttgaccttctaca 241  Q
    | |||   ||||||| ||||||||    
T  25663114 atcagaagttgttgatcttctaca 25663137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 118 - 241
Target Start/End: Original strand, 33692037 - 33692160
Alignment:
Q  118 taaaagcggcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagc 217  Q
    ||||||| |||||||||||| ||| ||||||| | ||| | |||| |||||||||||||| |||| ||||||||| |||| | |||||||| ||| ||||    
T  33692037 taaaagctgcgtcaagcaaagtggccaaacatgacaaaacgtgttatgacaatcaacatgcttttgtaccatttgcttttgacactttcggcttcttagc 33692136  T
Q  218 accagggattgttgaccttctaca 241  Q
    | ||| || |||||||||||||||    
T  33692137 atcagagactgttgaccttctaca 33692160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 126 - 241
Target Start/End: Complemental strand, 35310565 - 35310450
Alignment:
Q  126 gcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccaggga 225  Q
    |||||||||||| ||| ||||||| ||||||| ||||||||||||||||||| ||||||||||| || |||| | |||||||| ||||| ||| ||| |     
T  35310565 gcgtcaagcaaagtggccaaacatgagaaagcatgttctgacaatcaacatgcttttataccatctgcttttgacactttcggcttcctggcatcagagg 35310466  T
Q  226 ttgttgaccttctaca 241  Q
     |||| ||||||||||    
T  35310465 ctgttaaccttctaca 35310450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 129 - 214
Target Start/End: Original strand, 3114156 - 3114241
Alignment:
Q  129 tcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcct 214  Q
    |||| |||| ||| ||||||| ||||||| |||||||||| |||||||||||||||||||||||||||| | ||||| ||||||||    
T  3114156 tcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 3114241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 128 - 241
Target Start/End: Complemental strand, 34335452 - 34335339
Alignment:
Q  128 gtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccagggatt 227  Q
    ||||||||||| || ||||||| ||||||| ||| ||||||||||||||| ||||||||||||||||||| | |||||||  || ||  |||||| |  |    
T  34335452 gtcaagcaaaagggccaaacatgagaaagcgtgtcctgacaatcaacatgcttttataccatttgtttttgacactttcgactttctgacaccagaggct 34335353  T
Q  228 gttgaccttctaca 241  Q
    ||||||||||||||    
T  34335352 gttgaccttctaca 34335339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 143 - 240
Target Start/End: Complemental strand, 38875738 - 38875641
Alignment:
Q  143 caaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccagggattgttgaccttctac 240  Q
    ||||||| ||||||  |||||||||||||||||||||||| |||||||||||||| | |||||| | ||||||||||||| |  || |||||||||||    
T  38875738 caaacatgagaaagtgtgttctgacaatcaacatgtttttgtaccatttgtttttgacactttcagcttcctagcaccagaggctgctgaccttctac 38875641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 126 - 241
Target Start/End: Complemental strand, 27336810 - 27336695
Alignment:
Q  126 gcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccaggga 225  Q
    |||||||||||| ||||||||||| ||||| | ||||||||||||||||||  |||||||||||||| |||| | ||||  || ||||||||| ||| |     
T  27336810 gcgtcaagcaaagtggtcaaacatgagaaatcgtgttctgacaatcaacatacttttataccatttgcttttgacacttgtggcttcctagcatcagagg 27336711  T
Q  226 ttgttgaccttctaca 241  Q
      ||||||||||||||    
T  27336710 cagttgaccttctaca 27336695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 135 - 236
Target Start/End: Complemental strand, 35456064 - 35455963
Alignment:
Q  135 aaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccagggattgttgacc 234  Q
    ||||||||||||||| ||||||| |||||| |||||||||||| ||||||||| |||| |||| | | ||| || ||||||||||||| |  ||||||||    
T  35456064 aaaatggtcaaacatgagaaagcgtgttctaacaatcaacatgcttttataccttttgcttttgacaattttggcttcctagcaccagaggatgttgacc 35455965  T
Q  235 tt 236  Q
    ||    
T  35455964 tt 35455963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 126 - 190
Target Start/End: Complemental strand, 8859033 - 8858969
Alignment:
Q  126 gcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatt 190  Q
    |||||||||||| | ||||||||| ||||||| ||||||||||||||||||||||||||| ||||    
T  8859033 gcgtcaagcaaagtagtcaaacatgagaaagcgtgttctgacaatcaacatgtttttatatcatt 8858969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 126 - 241
Target Start/End: Complemental strand, 14423795 - 14423684
Alignment:
Q  126 gcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccaggga 225  Q
    |||||||||||| ||  | ||||| ||||||| ||||||||||||||||||| |||||||||||||| |||| | ||||||    |||||||| ||| |     
T  14423795 gcgtcaagcaaagtgaccgaacatgagaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacactttc----tcctagcatcagagg 14423700  T
Q  226 ttgttgaccttctaca 241  Q
     |||||||||||||||    
T  14423699 ctgttgaccttctaca 14423684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 236
Target Start/End: Original strand, 14723269 - 14723344
Alignment:
Q  161 ttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccagggattgttgacctt 236  Q
    ||||||||||||||||| ||||||| ||||||||||||| ||||| |||||  ||||| ||| | |||||||||||    
T  14723269 ttctgacaatcaacatgcttttatatcatttgttttttacacttttggttttttagcatcagaggttgttgacctt 14723344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 193
Target Start/End: Original strand, 26577399 - 26577457
Alignment:
Q  135 aaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgt 193  Q
    ||||||||||||||||||||||  ||||| ||| |||||||||||||||||| ||||||    
T  26577399 aaaatggtcaaacataagaaagtgtgttccgactatcaacatgtttttatacaatttgt 26577457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 240
Target Start/End: Complemental strand, 8100666 - 8100555
Alignment:
Q  129 tcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccagggattg 228  Q
    ||||| ||||||||||||||| ||||| | |||| |||||||  ||||| ||||||||||||||||| | | ||||||   |||||  ||| || | |||    
T  8100666 tcaagtaaaatggtcaaacatgagaaaacgtgttgtgacaatttacatgcttttataccatttgtttgtgacactttcaacttccttccactagaggttg 8100567  T
Q  229 ttgaccttctac 240  Q
    ||||||||||||    
T  8100566 ttgaccttctac 8100555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 241
Target Start/End: Original strand, 22188687 - 22188760
Alignment:
Q  168 aatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccagggattgttgaccttctaca 241  Q
    |||||||||| |||||||| |||||||||| | ||||||| |||  ||||||||| |  |||||||||||||||    
T  22188687 aatcaacatgattttatactatttgtttttgacactttcgattttttagcaccagaggctgttgaccttctaca 22188760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 240
Target Start/End: Original strand, 43115461 - 43115561
Alignment:
Q  140 ggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccagggattgttgaccttcta 239  Q
    ||||||| || ||||||| |||| |||||||||||||| ||| ||| |||||| |||| | ||||  |  ||| || |||||| ||||||||||||||||    
T  43115461 ggtcaaatatgagaaagcgtgttttgacaatcaacatgctttcatagcatttgcttttgacacttctgacttcgtaacaccagagattgttgaccttcta 43115560  T
Q  240 c 240  Q
    |    
T  43115561 c 43115561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 13307470 - 13307407
Alignment:
Q  129 tcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttg 192  Q
    ||||| ||||||||||||||| ||||||  | |||| || ||||||||||||||||||| ||||    
T  13307470 tcaagtaaaatggtcaaacatgagaaagtgtattcttactatcaacatgtttttataccttttg 13307407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 197
Target Start/End: Complemental strand, 430686 - 430648
Alignment:
Q  159 tgttctgacaatcaacatgtttttataccatttgttttt 197  Q
    ||||||||||||||||||| |||||||||||||| ||||    
T  430686 tgttctgacaatcaacatgcttttataccatttgctttt 430648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 118 - 241
Target Start/End: Original strand, 20259779 - 20259902
Alignment:
Q  118 taaaagcggcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagc 217  Q
    |||||||  ||||||||||| |||| ||| || ||||||| ||||||||||||||||||||||||||||||||| || || | |||||||||||| ||||    
T  20259779 taaaagctacgtcaagcaaagtggttaaaaatgagaaagcgtgttctgacaatcaacatgtttttataccatttattgttgacactttcggtttcttagc 20259878  T
Q  218 accagggattgttgaccttctaca 241  Q
    ||||| | ||||||||||||||||    
T  20259879 accagaggttgttgaccttctaca 20259902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 126 - 241
Target Start/End: Complemental strand, 21473120 - 21473005
Alignment:
Q  126 gcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccaggga 225  Q
    |||||||| ||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||| |||| | |||| | ||||||||||||||| |     
T  21473120 gcgtcaagtaaaatggccaaacatgagaaagcgtgttctgacaatcaacatgtttttataccatttgcttttgacacttgcagtttcctagcaccagagg 21473021  T
Q  226 ttgttgaccttctaca 241  Q
     |||||||||||||||    
T  21473020 ctgttgaccttctaca 21473005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 118 - 222
Target Start/End: Complemental strand, 19035572 - 19035468
Alignment:
Q  118 taaaagcggcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagc 217  Q
    ||||||| |||||||||||| ||| ||||||| ||||||| ||||||||||||||||||| |||||||||||||  |||| | |||| ||||||||||||    
T  19035572 taaaagctgcgtcaagcaaagtggccaaacatgagaaagcgtgttctgacaatcaacatgcttttataccatttacttttgacacttacggtttcctagc 19035473  T
Q  218 accag 222  Q
    |||||    
T  19035472 accag 19035468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 126 - 241
Target Start/End: Original strand, 28041117 - 28041232
Alignment:
Q  126 gcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccaggga 225  Q
    ||||||| |||| ||| ||||||| ||||||  ||||||||||||||||| |||||||||||||||| |||| | |||||||||||||||||||||| |     
T  28041117 gcgtcaaacaaagtggccaaacatgagaaagtgtgttctgacaatcaacaggtttttataccatttgcttttgacactttcggtttcctagcaccagagg 28041216  T
Q  226 ttgttgaccttctaca 241  Q
      ||||||||||||||    
T  28041217 cggttgaccttctaca 28041232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 126 - 241
Target Start/End: Complemental strand, 34644683 - 34644568
Alignment:
Q  126 gcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccaggga 225  Q
    ||||||| |||| ||| ||||||| ||||||| ||||||||||| | ||||| ||||||||||||||||||| | |||||||| ||||||||| ||| |     
T  34644683 gcgtcaaacaaagtggccaaacatgagaaagcgtgttctgacaacctacatgcttttataccatttgtttttgacactttcggcttcctagcatcagagg 34644584  T
Q  226 ttgttgaccttctaca 241  Q
    ||||||||||||||||    
T  34644583 ttgttgaccttctaca 34644568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 118 - 218
Target Start/End: Original strand, 31737305 - 31737405
Alignment:
Q  118 taaaagcggcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagc 217  Q
    |||||||||||||||||||| ||| ||||||| ||||| | | ||||||||||||||||| ||||||||||||||||||| | ||||||| ||| |||||    
T  31737305 taaaagcggcgtcaagcaaagtggccaaacatgagaaaacatattctgacaatcaacatgcttttataccatttgtttttgacactttcgattttctagc 31737404  T
Q  218 a 218  Q
    |    
T  31737405 a 31737405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 129 - 241
Target Start/End: Complemental strand, 2898819 - 2898704
Alignment:
Q  129 tcaagcaaaatggtcaaacataagaaag----cttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccaggg 224  Q
    ||||||||| ||| ||||||| ||||||    | ||||||||||||||| | |||||||||||||||| |||| |||||||||||||||||||||||| |    
T  2898819 tcaagcaaagtggccaaacatgagaaagtgagcgtgttctgacaatcaata-gtttttataccatttgcttttgatactttcggtttcctagcaccagag 2898721  T
Q  225 attgttgaccttctaca 241  Q
     ||||||||||||||||    
T  2898720 gttgttgaccttctaca 2898704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 128 - 243
Target Start/End: Complemental strand, 22347010 - 22346895
Alignment:
Q  128 gtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccagggatt 227  Q
    |||||||||| ||| |||| || ||||||| |||||||||||||||||||  |||||||| |||| |||| | |||||||||||||||| | ||| | ||    
T  22347010 gtcaagcaaagtggccaaatatgagaaagcgtgttctgacaatcaacatgcgtttataccttttgcttttgacactttcggtttcctagtagcagaggtt 22346911  T
Q  228 gttgaccttctacaca 243  Q
    ||||||||||||||||    
T  22346910 gttgaccttctacaca 22346895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 159 - 241
Target Start/End: Original strand, 29169816 - 29169898
Alignment:
Q  159 tgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccagggattgttgaccttctaca 241  Q
    ||||||||||||||||||| |||||||||||||| |||| | |||||||||||||||||||||| | ||||| ||||||||||    
T  29169816 tgttctgacaatcaacatgcttttataccatttgcttttgacactttcggtttcctagcaccagaggttgttaaccttctaca 29169898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 118 - 239
Target Start/End: Original strand, 45659630 - 45659751
Alignment:
Q  118 taaaagcggcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagc 217  Q
    ||||||| |||||||| ||  ||| ||||||  ||||||| ||||||||||||||||||| |||||||||||||| |||| | ||||||| ||||||| |    
T  45659630 taaaagctgcgtcaagtaaggtggccaaacacgagaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacactttcgatttcctatc 45659729  T
Q  218 accagggattgttgaccttcta 239  Q
    ||||| |  |||||||||||||    
T  45659730 accagaggctgttgaccttcta 45659751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 126 - 241
Target Start/End: Original strand, 4861979 - 4862094
Alignment:
Q  126 gcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccaggga 225  Q
    |||||||| ||||||||||||||| ||||||| | ||||||||| ||||||  |||||||| ||||| |||| | ||||||| ||||||| |||||        
T  4861979 gcgtcaagtaaaatggtcaaacatgagaaagcgtcttctgacaagcaacatacttttatacaatttgcttttgacactttcgatttcctaacaccaaaag 4862078  T
Q  226 ttgttgaccttctaca 241  Q
    ||||||||||||||||    
T  4862079 ttgttgaccttctaca 4862094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 127 - 197
Target Start/End: Complemental strand, 37200098 - 37200028
Alignment:
Q  127 cgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttt 197  Q
    ||||||| ||| ||||||||||||||||||| ||| || |||||||| |||||||||||||||||||||||    
T  37200098 cgtcaagtaaagtggtcaaacataagaaagcatgtgctaacaatcaatatgtttttataccatttgttttt 37200028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 134 - 241
Target Start/End: Complemental strand, 2764588 - 2764481
Alignment:
Q  134 caaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccagggattgttgac 233  Q
    |||| ||||||||||| ||||| | ||||| ||||||||||||| |||||| ||||||  |||| | |||||| | ||||||||| ||| | ||||||||    
T  2764588 caaagtggtcaaacatgagaaaacgtgttccgacaatcaacatgcttttatgccattttcttttgacactttcagcttcctagcatcagaggttgttgac 2764489  T
Q  234 cttctaca 241  Q
    ||||||||    
T  2764488 cttctaca 2764481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 24177540 - 24177616
Alignment:
Q  165 gacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccagggattgttgaccttctaca 241  Q
    |||||||||||| |||||||||||||||||||| | | |||||||||||||||| ||| |  |||| ||||||||||    
T  24177540 gacaatcaacatatttttataccatttgtttttgacagtttcggtttcctagcatcagaggctgtttaccttctaca 24177616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 198
Target Start/End: Original strand, 50161407 - 50161479
Alignment:
Q  126 gcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgtttttt 198  Q
    |||||||||||| ||| ||||||| ||||||| |||||| |||||||||||| ||||||| ||||| ||||||    
T  50161407 gcgtcaagcaaagtggacaaacatgagaaagcgtgttctcacaatcaacatgcttttatatcatttttttttt 50161479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 128 - 239
Target Start/End: Original strand, 37932210 - 37932320
Alignment:
Q  128 gtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccagggatt 227  Q
    ||||||||||||||||||| |  |||||| | ||||||||||||||| |||||||| |  |||  ||||||| |||||||| ||||||||||||| |  |    
T  37932210 gtcaagcaaaatggtcaaatacgagaaaggt-gttctgacaatcaacgtgtttttacattattatttttttacactttcggcttcctagcaccagaggat 37932308  T
Q  228 gttgaccttcta 239  Q
    |||||| |||||    
T  37932309 gttgacattcta 37932320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 151 - 241
Target Start/End: Complemental strand, 38731701 - 38731611
Alignment:
Q  151 agaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccagggattgttgaccttctaca 241  Q
    ||||||| ||||||||||||||||||  |||||||| ||||| |||| | ||||| || ||| ||||||||| | ||||| ||||||||||    
T  38731701 agaaagcgtgttctgacaatcaacatacttttatacaatttgcttttgaaacttttggcttcttagcaccagaggttgttaaccttctaca 38731611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 191
Target Start/End: Original strand, 50314619 - 50314679
Alignment:
Q  131 aagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccattt 191  Q
    ||||||| ||||||||||| | ||| |||||||| |||||||||||| |||||||||||||    
T  50314619 aagcaaagtggtcaaacatgacaaaacttgttctcacaatcaacatgcttttataccattt 50314679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 126 - 240
Target Start/End: Original strand, 25375823 - 25375937
Alignment:
Q  126 gcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccaggga 225  Q
    |||||||||||| ||  ||||||| | ||| | |||||| || |||||||||||||||||||||||| | || | ||||| || |||||| ||||   ||    
T  25375823 gcgtcaagcaaagtgaccaaacatgacaaaacatgttcttaccatcaacatgtttttataccatttgctattgacacttttggcttcctatcaccgaaga 25375922  T
Q  226 ttgttgaccttctac 240  Q
    |||||| ||||||||    
T  25375923 ttgttggccttctac 25375937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 192
Target Start/End: Complemental strand, 15584993 - 15584925
Alignment:
Q  124 cggcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttg 192  Q
    |||| ||||||||| || ||||||||  |||| | | |||||||||||||||||||| |||||||||||    
T  15584993 cggcttcaagcaaagtgatcaaacattggaaaacgtattctgacaatcaacatgtttctataccatttg 15584925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 239
Target Start/End: Complemental strand, 17307476 - 17307409
Alignment:
Q  172 aacatgtttttataccatttgttttttatactttcggtttcctagcaccagggattgttgaccttcta 239  Q
    ||||||||||||||| |||||| ||| ||| ||| || |||||||||| || ||||||||| ||||||    
T  17307476 aacatgtttttatactatttgtatttgataatttaggcttcctagcactagagattgttgatcttcta 17307409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 218
Target Start/End: Complemental strand, 7213341 - 7213275
Alignment:
Q  153 aaagcttgttctgacaatcaacatgttttt-ataccatttgttttttatactttcggtttcctagca 218  Q
    ||||| |||||||| ||| ||||||||||| ||| ||||| ||||| | ||||||||||||||||||    
T  7213341 aaagcatgttctgataattaacatgttttttatatcatttatttttgacactttcggtttcctagca 7213275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 241
Target Start/End: Complemental strand, 47459753 - 47459684
Alignment:
Q  172 aacatgtttttataccatttgttttttatactttcggtttcctagcaccagggattgttgaccttctaca 241  Q
    ||||||||||||||||||||| |||| ||||||| || ||||||| | ||| |   ||||||||||||||    
T  47459753 aacatgtttttataccatttgcttttgatacttttggcttcctagtatcagaggcagttgaccttctaca 47459684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 118 - 241
Target Start/End: Original strand, 45659 - 45782
Alignment:
Q  118 taaaagcggcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagc 217  Q
    ||||||| || ||||||||| || |||||||| ||||| | ||||||||||||||||||| |||||| |||||||||||| | |||||||||||| ||||    
T  45659 taaaagctgcatcaagcaaagtgatcaaacatgagaaaacgtgttctgacaatcaacatgcttttattccatttgtttttgacactttcggtttcttagc 45758  T
Q  218 accagggattgttgaccttctaca 241  Q
    ||||| |  |||||||||||||||    
T  45759 accagaggctgttgaccttctaca 45782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 118 - 241
Target Start/End: Original strand, 4206578 - 4206701
Alignment:
Q  118 taaaagcggcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagc 217  Q
    |||||| ||||||||||||| |||  |||||| ||||||| |||||||||||| |||||| ||||||| |||||| |||| | |||||||| ||||||||    
T  4206578 taaaagtggcgtcaagcaaagtggctaaacatgagaaagcgtgttctgacaatgaacatgcttttatatcatttgcttttgacactttcgggttcctagc 4206677  T
Q  218 accagggattgttgaccttctaca 241  Q
    ||||| | ||||||||||||||||    
T  4206678 accagaggttgttgaccttctaca 4206701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 128 - 240
Target Start/End: Complemental strand, 959695 - 959583
Alignment:
Q  128 gtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccagggatt 227  Q
    |||||||||| |||  || ||| ||||| | |||||||||||||||||||| |||||||||||||||||| | | |||||||||||||||||||| | ||    
T  959695 gtcaagcaaagtggctaaccatgagaaaacgtgttctgacaatcaacatgtctttataccatttgtttttgacattttcggtttcctagcaccagaggtt 959596  T
Q  228 gttgaccttctac 240  Q
    |||||||||||||    
T  959595 gttgaccttctac 959583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 144 - 241
Target Start/End: Original strand, 4165930 - 4166027
Alignment:
Q  144 aaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccagggattgttgaccttctaca 241  Q
    |||||| ||||||| ||||||||||||||||||| ||||||| |||||| |||| | |||||||| ||||||||||||| | ||||||||||||||||    
T  4165930 aaacatgagaaagcgtgttctgacaatcaacatgcttttatatcatttgcttttgacactttcgggttcctagcaccagaggttgttgaccttctaca 4166027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 129 - 222
Target Start/End: Complemental strand, 24016451 - 24016358
Alignment:
Q  129 tcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccag 222  Q
    ||||| ||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||| | || ||| ||| ||||||||||||||||    
T  24016451 tcaagtaaaatagtcaaacatgagaaagcttgttctcacaatcaacatgtttttataccatttgctattgatagttttggtttcctagcaccag 24016358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 118 - 246
Target Start/End: Original strand, 33220693 - 33220821
Alignment:
Q  118 taaaagcggcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagc 217  Q
    ||||||| || ||||||||| ||| ||||||| ||||||| |||  |||||||||||||| |||||||||||||| |||| | |||||||| ||||||||    
T  33220693 taaaagctgcatcaagcaaagtggccaaacatgagaaagcgtgtgttgacaatcaacatgcttttataccatttgcttttgacactttcggcttcctagc 33220792  T
Q  218 accagggattgttgaccttctacacatag 246  Q
    | | | | |||||||||||||||| ||||    
T  33220793 atccgaggttgttgaccttctacatatag 33220821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 118 - 241
Target Start/End: Complemental strand, 34304621 - 34304498
Alignment:
Q  118 taaaagcggcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagc 217  Q
    ||||||| ||||||||||||||   ||||||| ||||||| ||||||||||||||||||| |||||||||||||| |||| | ||||| || ||||||||    
T  34304621 taaaagctgcgtcaagcaaaataaccaaacatgagaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacactttgggcttcctagc 34304522  T
Q  218 accagggattgttgaccttctaca 241  Q
    | |||    |||||||||||||||    
T  34304521 atcagatgatgttgaccttctaca 34304498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 121 - 221
Target Start/End: Complemental strand, 34415558 - 34415458
Alignment:
Q  121 aagcggcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcacc 220  Q
    |||| ||||||||||||||||  |||||| ||||||  ||||||||||||||||||| |||||| |||||||||||| | ||||| ||||||||| ||||    
T  34415558 aagctgcgtcaagcaaaatggcgaaacatgagaaagtgtgttctgacaatcaacatgcttttatgccatttgtttttgacactttaggtttcctaacacc 34415459  T
Q  221 a 221  Q
    |    
T  34415458 a 34415458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 126 - 241
Target Start/End: Original strand, 17249295 - 17249410
Alignment:
Q  126 gcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccaggga 225  Q
    ||||||| |||| ||| ||||||| ||||||  ||||||||||||||||||| |||||||||||||| |||| | ||||| || ||||||||| ||| |     
T  17249295 gcgtcaaacaaagtggccaaacatgagaaagtgtgttctgacaatcaacatgcttttataccatttgcttttgacacttttggcttcctagcatcagagg 17249394  T
Q  226 ttgttgaccttctaca 241  Q
      ||||||||||||||    
T  17249395 cagttgaccttctaca 17249410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 159 - 241
Target Start/End: Complemental strand, 28626015 - 28625932
Alignment:
Q  159 tgttctgacaatcaacatgttttt-ataccatttgttttttatactttcggtttcctagcaccagggattgttgaccttctaca 241  Q
    |||||||||||||||||| ||||| ||||||||||||||||| ||||||  |||||||||||||| | ||||||| ||||||||    
T  28626015 tgttctgacaatcaacattttttttataccatttgttttttacactttcaatttcctagcaccagaggttgttgagcttctaca 28625932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 126 - 222
Target Start/End: Original strand, 34554267 - 34554363
Alignment:
Q  126 gcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccag 222  Q
    ||||||||||||| |  ||||||| ||||||| |||||||| |||||| |||||||||||||||||  |||| | || ||||| |||||||||||||    
T  34554267 gcgtcaagcaaaacgaccaaacatgagaaagcgtgttctgataatcaagatgtttttataccatttacttttgacacattcggcttcctagcaccag 34554363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 118 - 197
Target Start/End: Original strand, 357699 - 357778
Alignment:
Q  118 taaaagcggcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttt 197  Q
    |||||||  ||||||||||| ||| ||||||| ||||||| |||||||||||| |||||| ||||||| | |||||||||    
T  357699 taaaagcttcgtcaagcaaagtggccaaacatgagaaagcgtgttctgacaatgaacatgcttttataacctttgttttt 357778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 241
Target Start/End: Original strand, 29338086 - 29338184
Alignment:
Q  143 caaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccagggattgttgaccttctaca 241  Q
    ||||||| ||||| | |||||| |||||||||||| | |||||||||||| |||| | ||||  |  ||||||||||||| ||| ||||||||||||||    
T  29338086 caaacatgagaaaacgtgttctaacaatcaacatgctcttataccatttgcttttgacacttctgacttcctagcaccagagatcgttgaccttctaca 29338184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 197
Target Start/End: Complemental strand, 34168985 - 34168914
Alignment:
Q  126 gcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttt 197  Q
    |||||||||||| ||| ||||||| ||||||| ||||  ||||| ||||||| |||||||||||||| ||||    
T  34168985 gcgtcaagcaaagtggccaaacatgagaaagcatgtttggacaagcaacatgcttttataccatttgctttt 34168914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 115 - 197
Target Start/End: Complemental strand, 3715045 - 3714963
Alignment:
Q  115 tcataaaagcggcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttt 197  Q
    |||||||||  | ||||| ||||||||| |||||| ||||| | |||||| ||||| |||||||||||||| ||| |||||||    
T  3715045 tcataaaagttgtgtcaaacaaaatggttaaacatgagaaaacgtgttctcacaattaacatgtttttatatcatctgttttt 3714963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 197
Target Start/End: Original strand, 28008969 - 28009051
Alignment:
Q  118 taaaagcggcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatc---aacatgtttttataccatttgttttt 197  Q
    |||||||  |||||||||||  |||||||||| |||||||||||||| ||||||   || ||| |||||||||||||| ||||    
T  28008969 taaaagctacgtcaagcaaagcggtcaaacatgagaaagcttgttctaacaatcaagaatatggttttataccatttgctttt 28009051  T

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Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 131 - 241
Target Start/End: Original strand, 35739981 - 35740091
Alignment:
Q  131 aagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccagggattgtt 230  Q
    ||||||| ||| ||||||| |||||||  ||||||||||||||||||||||||||| ||| | |||| | |||||| ||||||||||||||| |||||||    
T  35739981 aagcaaagtggccaaacatgagaaagcgggttctgacaatcaacatgtttttatacaattagcttttgacactttcagtttcctagcaccagagattgtt 35740080  T
Q  231 gaccttctaca 241  Q
    |||||||||||    
T  35740081 gaccttctaca 35740091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 118 - 238
Target Start/End: Complemental strand, 6592700 - 6592580
Alignment:
Q  118 taaaagcggcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagc 217  Q
    ||||||| |||||||||||| ||| ||||||| ||||||| |||||| |||||||||||| ||||| |||||||| |||| | |||||| ||||||||||    
T  6592700 taaaagctgcgtcaagcaaagtggccaaacatgagaaagcgtgttctcacaatcaacatgattttaaaccatttgcttttgacactttcagtttcctagc 6592601  T
Q  218 accagggattgttgaccttct 238  Q
     |||| | |||||||||||||    
T  6592600 tccagaggttgttgaccttct 6592580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 118 - 241
Target Start/End: Complemental strand, 24125153 - 24125030
Alignment:
Q  118 taaaagcggcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagc 217  Q
    ||||||| || ||||||||||||| ||||||| ||||||| || |||||||||||||||| |||||||||||||| |||| | | ||| | |||||||||    
T  24125153 taaaagctgcatcaagcaaaatggccaaacatgagaaagcgtgctctgacaatcaacatgcttttataccatttgcttttgacaattttgatttcctagc 24125054  T
Q  218 accagggattgttgaccttctaca 241  Q
    ||||| | |||||| |||||||||    
T  24125053 accagaggttgttggccttctaca 24125030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 134 - 241
Target Start/End: Complemental strand, 38815403 - 38815296
Alignment:
Q  134 caaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccagggattgttgac 233  Q
    |||| ||| ||||||| ||||||| ||||||||||||||||||| |||||||||||||| |||| | |||||| | ||||||||||||| |  |||||||    
T  38815403 caaagtggccaaacatgagaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacactttccgcttcctagcaccagagggtgttgac 38815304  T
Q  234 cttctaca 241  Q
    ||||||||    
T  38815303 cttctaca 38815296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 129 - 241
Target Start/End: Complemental strand, 3188083 - 3187971
Alignment:
Q  129 tcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccagggattg 228  Q
    ||||||||| |||  |||||| || |||| ||||||||||||||||||| |||||||||||||| |||| | |||||||| ||||||||| ||| | |||    
T  3188083 tcaagcaaagtggcaaaacatgaggaagcgtgttctgacaatcaacatgcttttataccatttgcttttgaaactttcggcttcctagcatcagaggttg 3187984  T
Q  229 ttgaccttctaca 241  Q
    || ||||||||||    
T  3187983 ttaaccttctaca 3187971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 126 - 218
Target Start/End: Complemental strand, 39434784 - 39434692
Alignment:
Q  126 gcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagca 218  Q
    |||||||||||| ||| ||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||| | ||||| |  |||||||||    
T  39434784 gcgtcaagcaaagtggccaaacatgagaaagcgtgttctgacaatcaacatgcttttataccatttgtttttgacacttttgacttcctagca 39434692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 126 - 232
Target Start/End: Complemental strand, 8882444 - 8882339
Alignment:
Q  126 gcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccaggga 225  Q
    |||||||||||| ||| ||||||| ||||||| ||||||||||||||| ||| ||||| ||||||||||||| | |||||| |||| |||||||||| |     
T  8882444 gcgtcaagcaaagtggccaaacatgagaaagcgtgttctgacaatcaatatgcttttaaaccatttgtttttga-actttcagttttctagcaccagagg 8882346  T
Q  226 ttgttga 232  Q
    |||||||    
T  8882345 ttgttga 8882339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 144 - 236
Target Start/End: Complemental strand, 6618383 - 6618291
Alignment:
Q  144 aaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccagggattgttgacctt 236  Q
    |||||| ||||||| |||||| |||||||||||| ||||| |||||||| |||| | |||||| |||||||||| |||| |||||||||||||    
T  6618383 aaacatgagaaagcgtgttctcacaatcaacatgattttaaaccatttgcttttgacactttcagtttcctagctccagagattgttgacctt 6618291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 126 - 216
Target Start/End: Complemental strand, 500344 - 500254
Alignment:
Q  126 gcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctag 216  Q
    |||||||||||| ||| ||||||| ||||| | ||||||||||||||||||| |||||||||||||  |||| | | ||||||||||||||    
T  500344 gcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgcttttataccatttacttttgacattttcggtttcctag 500254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 128 - 243
Target Start/End: Original strand, 25021806 - 25021921
Alignment:
Q  128 gtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccagggatt 227  Q
    |||||||||| |||| ||| || ||||||  |||||| ||||||||||||||||||||||||||  |||| | | ||| || ||||||||||||| | ||    
T  25021806 gtcaagcaaagtggtgaaatatgagaaagtgtgttctcacaatcaacatgtttttataccattttcttttgacatttttggcttcctagcaccagaggtt 25021905  T
Q  228 gttgaccttctacaca 243  Q
    ||||||| || |||||    
T  25021906 gttgaccatccacaca 25021921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 126 - 197
Target Start/End: Complemental strand, 8619931 - 8619860
Alignment:
Q  126 gcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttt 197  Q
    |||||||| ||||||||||||||| | ||||| | || ||||||||||| || |||||||||||||||||||    
T  8619931 gcgtcaagtaaaatggtcaaacatgaaaaagcgtattttgacaatcaacgtgcttttataccatttgttttt 8619860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 144 - 240
Target Start/End: Complemental strand, 28196291 - 28196195
Alignment:
Q  144 aaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccagggattgttgaccttctac 240  Q
    |||||| ||||||  |||| ||| ||| |||||||||||||||||||||||||| | ||||| |  ||||||||||||  | ||||||||| |||||    
T  28196291 aaacatgagaaagtgtgttatgataataaacatgtttttataccatttgtttttgacacttttgtcttcctagcaccataggttgttgaccatctac 28196195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 192
Target Start/End: Complemental strand, 10189645 - 10189594
Alignment:
Q  141 gtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttg 192  Q
    ||||||||  ||||||| ||||||||||||||||||||||||||| ||||||    
T  10189645 gtcaaacaagagaaagcatgttctgacaatcaacatgtttttatatcatttg 10189594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 151 - 236
Target Start/End: Original strand, 39671186 - 39671272
Alignment:
Q  151 agaaagcttgttctgacaatcaacatgtttttataccattt-gttttttatactttcggtttcctagcaccagggattgttgacctt 236  Q
    ||||||| |||| ||||||| ||||||||||||||| ||||  ||||||| | |||||| ||||||||||||| | ||||| |||||    
T  39671186 agaaagcgtgttttgacaattaacatgtttttatacaatttatttttttacattttcggcttcctagcaccagaggttgttaacctt 39671272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 176
Target Start/End: Original strand, 22589336 - 22589394
Alignment:
Q  118 taaaagcggcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacat 176  Q
    ||||||| ||||||||||||||||   ||||| ||||||| ||||||||||| ||||||    
T  22589336 taaaagctgcgtcaagcaaaatggctgaacatgagaaagcgtgttctgacaaccaacat 22589394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 120 - 241
Target Start/End: Complemental strand, 33373 - 33252
Alignment:
Q  120 aaagcggcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcac 219  Q
    |||| ||| ||||||||| |||  |||||| ||||||| |||||||||||||||||||||||||||||||||  |||| | | ||||||||||||| |||    
T  33373 aaagtggcatcaagcaaagtggctaaacatgagaaagcgtgttctgacaatcaacatgtttttataccatttacttttgacattttcggtttcctaacac 33274  T
Q  220 cagggattgttgaccttctaca 241  Q
    ||| | ||||||||||||||||    
T  33273 cagaggttgttgaccttctaca 33252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0490 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 126 - 241
Target Start/End: Complemental strand, 6451 - 6336
Alignment:
Q  126 gcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccaggga 225  Q
    |||||||| ||| ||| ||||||| ||||||| ||||||||||||||||||| || ||||||||||| |||| | |||||| ||||||||||||||| |     
T  6451 gcgtcaagtaaagtggccaaacatgagaaagcgtgttctgacaatcaacatgcttctataccatttgcttttgacactttcagtttcctagcaccagagg 6352  T
Q  226 ttgttgaccttctaca 241  Q
     |||||||||||||||    
T  6351 ctgttgaccttctaca 6336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 120 - 241
Target Start/End: Complemental strand, 103228 - 103108
Alignment:
Q  120 aaagcggcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcac 219  Q
    ||||| |||||||| || |||| ||||||  ||||||| ||| ||||||||||||||| |||||||||||||| |||| | |||||||||||||||||||    
T  103228 aaagctgcgtcaagtaagatggccaaacacgagaaagcgtgt-ctgacaatcaacatgcttttataccatttgcttttgacactttcggtttcctagcac 103130  T
Q  220 cagggattgttgaccttctaca 241  Q
    ||| |  |||||||||||||||    
T  103129 cagaggctgttgaccttctaca 103108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 144 - 236
Target Start/End: Complemental strand, 7701 - 7609
Alignment:
Q  144 aaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccagggattgttgacctt 236  Q
    |||||| ||||||| |||||| |||||||||||| ||||| |||||||| |||| | |||||| |||||||||| |||| |||||||||||||    
T  7701 aaacatgagaaagcgtgttctcacaatcaacatgattttaaaccatttgcttttgacactttcagtttcctagctccagagattgttgacctt 7609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0493 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0493
Description:

Target: scaffold0493; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 145 - 219
Target Start/End: Original strand, 8525 - 8599
Alignment:
Q  145 aacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcac 219  Q
    ||||| ||||| | ||||||||||||||||||||||||||||||||||  ||| | ||||| |||||||||||||    
T  8525 aacatgagaaaacatgttctgacaatcaacatgtttttataccatttgcgtttaacacttttggtttcctagcac 8599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 239
Target Start/End: Complemental strand, 10481 - 10364
Alignment:
Q  126 gcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaa----catgtttttataccatttgttttttatactttcggtttcctagcacca 221  Q
    |||||||| ||||||| ||||||| | || || |||||||||||||||    |||| |||||||||||||| |||| | ||||  || ||||||||||||    
T  10481 gcgtcaagtaaaatggccaaacatgataatgcgtgttctgacaatcaatcaacatgcttttataccatttgcttttgacacttgtggcttcctagcacca 10382  T
Q  222 gggattgttgaccttcta 239  Q
    | | ||||||||||||||    
T  10381 gaggttgttgaccttcta 10364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 118 - 186
Target Start/End: Complemental strand, 16259 - 16191
Alignment:
Q  118 taaaagcggcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttatac 186  Q
    ||||||| ||||||| |||||||| ||||||| ||||| | |||||||||||| |||||||||||||||    
T  16259 taaaagctgcgtcaaacaaaatggccaaacatgagaaaacatgttctgacaataaacatgtttttatac 16191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 215
Target Start/End: Original strand, 47529 - 47618
Alignment:
Q  126 gcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttccta 215  Q
    |||||||| ||||||| ||||||| |||||   |||||||||| | ||||| ||||||||||||||| |||| | ||||||| |||||||    
T  47529 gcgtcaagtaaaatggccaaacatgagaaaatgtgttctgacagttaacatatttttataccatttgcttttaacactttcgatttccta 47618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1768 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold1768
Description:

Target: scaffold1768; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 126 - 238
Target Start/End: Original strand, 174 - 286
Alignment:
Q  126 gcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctagcaccaggga 225  Q
    |||||||||||| ||| ||||||| ||| ||   ||| |||| ||||||||| ||||||||||||||| ||| | ||||| ||||| |||| ||||  |     
T  174 gcgtcaagcaaagtggccaaacatgagacagtgggttatgaccatcaacatgcttttataccatttgtgtttgacacttttggttttctagtaccaaagg 273  T
Q  226 ttgttgaccttct 238  Q
    |||||||||||||    
T  274 ttgttgaccttct 286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 120 - 182
Target Start/End: Complemental strand, 37453 - 37391
Alignment:
Q  120 aaagcggcgtcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgttttt 182  Q
    ||||| || |||| ||||||| |||||||| ||||||| | ||||||||||||||||||||||    
T  37453 aaagcagcttcaaacaaaatgatcaaacatgagaaagcatattctgacaatcaacatgttttt 37391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 207
Target Start/End: Complemental strand, 49525 - 49447
Alignment:
Q  129 tcaagcaaaatggtcaaacataagaaagcttgttctgacaatcaacatgtttttataccatttgttttttatactttcg 207  Q
    |||| |||| ||||||||  | ||||| | |||||||||||||||| || |||||||||||||| |||| | |||||||    
T  49525 tcaaacaaagtggtcaaatgtgagaaatcgtgttctgacaatcaacgtgcttttataccatttgcttttgacactttcg 49447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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