View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7639_low_2 (Length: 503)
Name: NF7639_low_2
Description: NF7639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7639_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 9571432 - 9571793
Alignment:
| Q |
1 |
atatcacaaatttacttataaagaggtatatataaacttaaagatgtttaaagaaaaattaatgcagataattttgaaaatatttgaaacgcagaagcta |
100 |
Q |
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| T |
9571432 |
atatcacaaatttacttataaagaggtatatataaacttaaagatgtttaaagaaaaattaatgcagataattttgaaaatatttgaaacgcagaagcta |
9571531 |
T |
|
| Q |
101 |
attttaacgtacacaagctgtttctaaaaagtttgactcttggtatattttttagggagggggttgaattgtataagacagattattgtgcataatataa |
200 |
Q |
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| T |
9571532 |
attttaacgtacacaagctgtttctaaaaagtttgactcttggtatattttttagggagggggttgaattgtataagacagattattgtgcataatataa |
9571631 |
T |
|
| Q |
201 |
tgagagatccataacatatatccaaagcataaaaaatatatgctgagatttgagagtaatgacgccggcttctgcnnnnnnngagccacatccaatatac |
300 |
Q |
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| T |
9571632 |
tgagagatccataacatatatccaaagcataaaaaatatatgctgagatttgagagtaatgacgccggcttctgcaaaaaaagagccacatccaatatac |
9571731 |
T |
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| Q |
301 |
aaattaaactttacaatgaaataacttcgacaagggtaaaatgaggttagttaactaggaag |
362 |
Q |
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| T |
9571732 |
aaattaaactttacaatgaaataacttcgacaagggtaaaatgaggttagttaactatgaag |
9571793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 422 - 495
Target Start/End: Original strand, 9571853 - 9571926
Alignment:
| Q |
422 |
cttcaatctgaattgtcggtgctacatagttggttaatcaacaagcttaaaatcaatgaacagctatattcttc |
495 |
Q |
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| T |
9571853 |
cttcaatctgaattgtcggtgctacatagttggttaatcaacaagcttaaaatcaatgaacagctattttcttc |
9571926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 422 - 452
Target Start/End: Complemental strand, 3522115 - 3522085
Alignment:
| Q |
422 |
cttcaatctgaattgtcggtgctacatagtt |
452 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
3522115 |
cttcaatctgaattgtcggtgctacatagtt |
3522085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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