View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7639_low_7 (Length: 406)

Name: NF7639_low_7
Description: NF7639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7639_low_7
NF7639_low_7
[»] chr3 (21 HSPs)
chr3 (7-388)||(22431800-22432181)
chr3 (12-240)||(22443396-22443624)
chr3 (7-185)||(22632514-22632695)
chr3 (12-185)||(22468602-22468778)
chr3 (7-185)||(22631118-22631299)
chr3 (12-165)||(22368566-22368719)
chr3 (7-185)||(22358654-22358835)
chr3 (70-240)||(22437349-22437519)
chr3 (7-185)||(22636155-22636336)
chr3 (116-240)||(22459220-22459341)
chr3 (116-240)||(22482201-22482322)
chr3 (116-184)||(22207648-22207716)
chr3 (111-164)||(22370906-22370959)
chr3 (16-59)||(22207785-22207828)
chr3 (118-156)||(22010502-22010540)
chr3 (118-156)||(22186668-22186706)
chr3 (124-169)||(3198726-3198771)
chr3 (124-157)||(3221871-3221904)
chr3 (14-59)||(22459136-22459181)
chr3 (14-59)||(22482117-22482162)
chr3 (116-149)||(22657830-22657863)
[»] chr1 (3 HSPs)
chr1 (262-375)||(15802988-15803099)
chr1 (116-149)||(34975186-34975219)
chr1 (123-151)||(4255365-4255393)


Alignment Details
Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 7 - 388
Target Start/End: Original strand, 22431800 - 22432181
Alignment:
Q  7 tttggtgttctgaatcttgtaagctatttggagacgaagaatcttagttttgatcaagtcaagaccagcagcgcatccaggatcagaagattgttgttct 106  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22431800 tttgatgttctgaatcttgtaagctatttggagacgaagaatcttagttttgatcaagtcaagaccagcagcgcatccaggatcagaagattgttgttct 22431899  T
Q  107 tcaaggaagatataatcatcaatgacatcttctatgtgaaaagatgcttctatcagctgtttgatctttgctttgatttcctgacttgtttccatgtctt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22431900 tcaaggaagatataatcatcaatgacatcttctatgtgaaaagatgcttctatcagctgtttgatctttgctttgatttcctgacttgtttccatgtctt 22431999  T
Q  207 cttcagcatcagccattctatctgcattgttgatcctctttgatttaattagtggtaggatagtaatgatgtgtcacttctaaaaacacttttcaatctc 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22432000 cttcagcatcagccattctatctgcattgttgatcctctttgatttaattagtggtaggatagtaatgatgtgtcacttctaaaaacacttttcaatctc 22432099  T
Q  307 tcttaaaaacatcgcaacctctcttattctatcatcataatatgattatgctccactagttcaatttaacatcacatttatg 388  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22432100 tcttaaaaacatctcaacctctcttattctatcatcataatatgattatgctccactagttcaatttaacatcacatttatg 22432181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 12 - 240
Target Start/End: Original strand, 22443396 - 22443624
Alignment:
Q  12 tgttctgaatcttgtaagctatttggagacgaagaatcttagttttgatcaagtcaagaccagcagcgcatccaggatcagaagattgttgttcttcaag 111  Q
    |||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||    
T  22443396 tgttctgaatcttaactgctatttggagacgaagaatcttagttttgatcaagtcaagaccagcagcacatccaagatcagaagattgatgttcttcaag 22443495  T
Q  112 gaagatataatcatcaatgacatcttctatgtgaaaagatgcttctatcagctgtttgatctttgctttgatttcctgacttgtttccatgtcttcttca 211  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||| ||||||||||    
T  22443496 gaagatataatcatcaatgacatcttctatatgaaaagatgcttctatcaactgtttgatcattgctttgattttctgacttgtttccacgtcttcttca 22443595  T
Q  212 gcatcagccattctatctgcattgttgat 240  Q
    |||||||||||||||||||||||||||||    
T  22443596 gcatcagccattctatctgcattgttgat 22443624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 7 - 185
Target Start/End: Original strand, 22632514 - 22632695
Alignment:
Q  7 tttggtgttctgaatcttgtaagctatttggagacgaagaatcttagttttgatcaagtcaaga---ccagcagcgcatccaggatcagaagattgttgt 103  Q
    |||| ||||||||||||||| ||| |||||||||||||||||||||||||| | |||||||| |   |||| ||| ||||||||||||||||||||||||    
T  22632514 tttgatgttctgaatcttgtcagcaatttggagacgaagaatcttagttttcaccaagtcaatagctccagtagcacatccaggatcagaagattgttgt 22632613  T
Q  104 tcttcaaggaagatataatcatcaatgacatcttctatgtgaaaagatgcttctatcagctgtttgatctttgctttgattt 185  Q
    || ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |  |||||||||    
T  22632614 tcctcaagaaagatataatcatcaatgacatcttcaatgtgaaaagatgcttctatcagctgcttgatcatgtctttgattt 22632695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 12 - 185
Target Start/End: Original strand, 22468602 - 22468778
Alignment:
Q  12 tgttctgaatcttgtaagctatttggagacgaagaatcttagttttgatcaagtcaaga---ccagcagcgcatccaggatcagaagattgttgttcttc 108  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||| | |||||||| |   |||||||| |||||||||||||||||||||||||| ||    
T  22468602 tgttctgaatcttgtaagttatttggagacgaaggatcttagttttcaccaagtcaacagcaccagcagcacatccaggatcagaagattgttgttcctc 22468701  T
Q  109 aaggaagatataatcatcaatgacatcttctatgtgaaaagatgcttctatcagctgtttgatctttgctttgattt 185  Q
    ||| ||||||||||||||||  ||||||||||||||| ||||||||||||||||||| |||||| |  |||||||||    
T  22468702 aagtaagatataatcatcaaccacatcttctatgtgataagatgcttctatcagctgcttgatcatgtctttgattt 22468778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 7 - 185
Target Start/End: Original strand, 22631118 - 22631299
Alignment:
Q  7 tttggtgttctgaatcttgtaagctatttggagacgaagaatcttagttttgatcaagtcaaga---ccagcagcgcatccaggatcagaagattgttgt 103  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||     |||||||| ||||||||||||| ||  ||||||    
T  22631118 tttgatgttctgaatcttgtaagcaatttggagacgaagaatcttagttttcaccaagtcaacggctccagcagcacatccaggatcaggagcatgttgt 22631217  T
Q  104 tcttcaaggaagatataatcatcaatgacatcttctatgtgaaaagatgcttctatcagctgtttgatctttgctttgattt 185  Q
    || ||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||| |  |||||||||    
T  22631218 tcctcatggaagatataatcatcaatgacatcttccatgtggaaagatgcttctatcagctgcttgatcatgtctttgattt 22631299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 12 - 165
Target Start/End: Original strand, 22368566 - 22368719
Alignment:
Q  12 tgttctgaatcttgtaagctatttggagacgaagaatcttagttttgatcaagtcaagaccagcagcgcatccaggatcagaagattgttgttcttcaag 111  Q
    ||||||||||||| ||||| ||||||||||| ||  |  ||||||||| |||||||| | ||||||| |||||||| ||||||||||| ||||| |||||    
T  22368566 tgttctgaatcttataagcaatttggagacgtagttttgtagttttgagcaagtcaacagcagcagcacatccaggttcagaagattgatgttcctcaag 22368665  T
Q  112 gaagatataatcatcaatgacatcttctatgtgaaaagatgcttctatcagctg 165  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  22368666 gaagatataatcatcaatgacatcttctatgtgaaaagatgtttctatcagctg 22368719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 7 - 185
Target Start/End: Original strand, 22358654 - 22358835
Alignment:
Q  7 tttggtgttctgaatcttgtaagctatttggagacgaagaatcttagttttgatcaagtc---aagaccagcagcgcatccaggatcagaagattgttgt 103  Q
    |||| ||||||||||||||||||||||||||||||| | |  | |||||||||   |||    || ||||||||| ||||||||||||| ||  ||||||    
T  22358654 tttgatgttctgaatcttgtaagctatttggagacggaaagccatagttttgacacagtttgtaacaccagcagcacatccaggatcaggagcatgttgt 22358753  T
Q  104 tcttcaaggaagatataatcatcaatgacatcttctatgtgaaaagatgcttctatcagctgtttgatctttgctttgattt 185  Q
    || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |  |||||||||    
T  22358754 tcctcaagaaagatataatcatcaatgacatcttctatgtgaaaagatgcttctatcagctgcttgatcatgtctttgattt 22358835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 70 - 240
Target Start/End: Original strand, 22437349 - 22437519
Alignment:
Q  70 accagcagcgcatccaggatcagaagattgttgttcttcaaggaagatataatcatcaatgacatcttctatgtgaaaagatgcttctatcagctgtttg 169  Q
    |||||| || ||||||||||||| || ||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||  ||     
T  22437349 accagcggcacatccaggatcaggagcttgttgttcctcatggaagatataatcatcaatgacatcttctatgtcaaaagatgcttctattagcttcttc 22437448  T
Q  170 atctttgctttgatttcctgacttgtttccatgtcttcttcagcatcagccattctatctgcattgttgat 240  Q
    ||| ||||||||||| | | |||| |||   ||||||||||  ||||||| | ||||||| ||||| ||||    
T  22437449 atccttgctttgattgcatcacttctttttttgtcttcttcttcatcagcgaatctatcttcattgctgat 22437519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 7 - 185
Target Start/End: Original strand, 22636155 - 22636336
Alignment:
Q  7 tttggtgttctgaatcttgtaagctatttggagacgaagaatcttagttttgatcaagtc---aagaccagcagcgcatccaggatcagaagattgttgt 103  Q
    |||| ||||||||||||||||||||||||||||||| | |  | |||||||||   |||    |  | ||||||| || |||||||||| ||  ||||||    
T  22636155 tttgatgttctgaatcttgtaagctatttggagacggaaagccatagttttgacacagtttgtagcaacagcagcacaaccaggatcaggagcatgttgt 22636254  T
Q  104 tcttcaaggaagatataatcatcaatgacatcttctatgtgaaaagatgcttctatcagctgtttgatctttgctttgattt 185  Q
    || ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |  |||||||||    
T  22636255 tcctcaagaaagatataatcatcaatgacatcttcaatgtgaaaagatgcttctatcagctgcttgatcatgtctttgattt 22636336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 116 - 240
Target Start/End: Original strand, 22459220 - 22459341
Alignment:
Q  116 atataatcatcaatgacatcttctatgtgaaaagatgcttctatcagctgtttgatctttgctttgatttcctgacttgtttccatgtcttcttcagcat 215  Q
    ||||| ||||||||||||||||  |||  ||||||||||||||| ||||| |||||| ||||||||||| | | |||||   |  |||| ||||||||||    
T  22459220 atatattcatcaatgacatcttgaatgccaaaagatgcttctatgagctgcttgatccttgctttgattccttcacttg---cattgtcatcttcagcat 22459316  T
Q  216 cagccattctatctgcattgttgat 240  Q
    |||| ||||||||||||||||||||    
T  22459317 cagctattctatctgcattgttgat 22459341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 116 - 240
Target Start/End: Original strand, 22482201 - 22482322
Alignment:
Q  116 atataatcatcaatgacatcttctatgtgaaaagatgcttctatcagctgtttgatctttgctttgatttcctgacttgtttccatgtcttcttcagcat 215  Q
    ||||| ||||||||||||||||  |||  ||||||||||||||| ||||| |||||| ||||||||||| | | |||||   |  |||| ||||||||||    
T  22482201 atatattcatcaatgacatcttgaatgccaaaagatgcttctatgagctgcttgatccttgctttgattccttcacttg---cattgtcatcttcagcat 22482297  T
Q  216 cagccattctatctgcattgttgat 240  Q
    |||| ||||||||||||||||||||    
T  22482298 cagctattctatctgcattgttgat 22482322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 116 - 184
Target Start/End: Complemental strand, 22207716 - 22207648
Alignment:
Q  116 atataatcatcaatgacatcttctatgtgaaaagatgcttctatcagctgtttgatctttgctttgatt 184  Q
    ||||| |||||||||||||||| ||| ||||||||||||||| |||||||| |||||||||||||||||    
T  22207716 atatattcatcaatgacatcttgtatctgaaaagatgcttctctcagctgtctgatctttgctttgatt 22207648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 111 - 164
Target Start/End: Original strand, 22370906 - 22370959
Alignment:
Q  111 ggaagatataatcatcaatgacatcttctatgtgaaaagatgcttctatcagct 164  Q
    |||||||||| |||||||||||||||||||||| |||||||  |||| ||||||    
T  22370906 ggaagatatattcatcaatgacatcttctatgtaaaaagatatttctttcagct 22370959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 22207828 - 22207785
Alignment:
Q  16 ctgaatcttgtaagctatttggagacgaagaatcttagttttga 59  Q
    ||||||||||||||||||||| |||||||||||| | |||||||    
T  22207828 ctgaatcttgtaagctatttgtagacgaagaatcctggttttga 22207785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 156
Target Start/End: Complemental strand, 22010540 - 22010502
Alignment:
Q  118 ataatcatcaatgacatcttctatgtgaaaagatgcttc 156  Q
    |||||||||||||| ||||||||||||||||| ||||||    
T  22010540 ataatcatcaatgatatcttctatgtgaaaagctgcttc 22010502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 156
Target Start/End: Complemental strand, 22186706 - 22186668
Alignment:
Q  118 ataatcatcaatgacatcttctatgtgaaaagatgcttc 156  Q
    |||||||||||||| ||||||||||||||||| ||||||    
T  22186706 ataatcatcaatgatatcttctatgtgaaaagctgcttc 22186668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 169
Target Start/End: Original strand, 3198726 - 3198771
Alignment:
Q  124 atcaatgacatcttctatgtgaaaagatgcttctatcagctgtttg 169  Q
    |||||| |||||||||||| |||||||| ||||| |||||||||||    
T  3198726 atcaatcacatcttctatgcgaaaagattcttctctcagctgtttg 3198771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 157
Target Start/End: Original strand, 3221871 - 3221904
Alignment:
Q  124 atcaatgacatcttctatgtgaaaagatgcttct 157  Q
    |||||| |||||||||||||||||||||||||||    
T  3221871 atcaatcacatcttctatgtgaaaagatgcttct 3221904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 22459136 - 22459181
Alignment:
Q  14 ttctgaatcttgtaagctatttggagacgaagaatcttagttttga 59  Q
    |||||||||||||| ||||||||| ||||||||||  |||||||||    
T  22459136 ttctgaatcttgtatgctatttggcgacgaagaattatagttttga 22459181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 22482117 - 22482162
Alignment:
Q  14 ttctgaatcttgtaagctatttggagacgaagaatcttagttttga 59  Q
    |||||||||||||| ||||||||| ||||||||||  |||||||||    
T  22482117 ttctgaatcttgtatgctatttggcgacgaagaattatagttttga 22482162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 149
Target Start/End: Original strand, 22657830 - 22657863
Alignment:
Q  116 atataatcatcaatgacatcttctatgtgaaaag 149  Q
    ||||||||||||||||||||||||||| ||||||    
T  22657830 atataatcatcaatgacatcttctatgcgaaaag 22657863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 262 - 375
Target Start/End: Original strand, 15802988 - 15803099
Alignment:
Q  262 taggatagtaatgatgtgtcacttctaaaaacacttttcaatctctcttaaaaacatcgcaacctctcttattctatcatcataatatgattatgctcca 361  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||||||||| || ||| |||||||||||||||||||| |||  ||||||||||     
T  15802988 taggatagtaatgatgtgtcacttctaaaaacacttctcaacctctcttaaaaacttctcaatctctcttattctatcatcatcata--attatgctccg 15803085  T
Q  362 ctagttcaatttaa 375  Q
    |||| ||| |||||    
T  15803086 ctagatcagtttaa 15803099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 149
Target Start/End: Complemental strand, 34975219 - 34975186
Alignment:
Q  116 atataatcatcaatgacatcttctatgtgaaaag 149  Q
    ||||||||||||||||||||||||||| ||||||    
T  34975219 atataatcatcaatgacatcttctatgagaaaag 34975186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 151
Target Start/End: Complemental strand, 4255393 - 4255365
Alignment:
Q  123 catcaatgacatcttctatgtgaaaagat 151  Q
    |||||||||||||||||||||||||||||    
T  4255393 catcaatgacatcttctatgtgaaaagat 4255365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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