View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7640_low_1 (Length: 270)
Name: NF7640_low_1
Description: NF7640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7640_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 2 - 258
Target Start/End: Original strand, 52109041 - 52109297
Alignment:
| Q |
2 |
tttggggatttggaagtggatttggatttaattggtgagaaattagcttagaaacattaacattgcgtgatgaaagtatattgaggaattttcttcttgt |
101 |
Q |
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| T |
52109041 |
tttggggatttggaagtggatttggatttaattggtgagaaattagcttggaaacattaacattgcgtgatgaaagtatattgaggaattttcttcttgt |
52109140 |
T |
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| Q |
102 |
gaacattgatttgacagtggaagtgaagcactgagtgcagaaatatggagtgtggtgaaaatgaagaaggtggcttcaagtgtgaagaaaacagtgttcc |
201 |
Q |
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| T |
52109141 |
gaacattgatttgacagtggaagtgaagcactgagtgcagaaatatggagtgtgatgaaaatgaagaaggtgacttcaagtgtgaagaaaacagtgttcc |
52109240 |
T |
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| Q |
202 |
taaagaaattttgaggtttcaaaagagtaatgaattaagcataagtcaccacaggtt |
258 |
Q |
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| T |
52109241 |
taaagaaattttgaggtttcaaaagagtaatgaattaagcataattcaccaccggtt |
52109297 |
T |
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Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 63 - 150
Target Start/End: Original strand, 44526207 - 44526294
Alignment:
| Q |
63 |
attgcgtgatgaaagtatattgaggaattttcttcttgtgaacattgatttgacagtggaagtgaagcactgagtgcagaaatatgga |
150 |
Q |
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| T |
44526207 |
attgcgtgatgagaatatagtgaggaattttcttcttgtgagcattgatttgatagaggaagtgaagcactgggtgcagaattatgga |
44526294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 44520337 - 44520388
Alignment:
| Q |
7 |
ggatttggaagtggatttggatttaattggtgagaaattagcttagaaacat |
58 |
Q |
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| T |
44520337 |
ggatgtggaagtgcatttggatataattggtgtgaaattagcttagaaacat |
44520388 |
T |
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