View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7641_high_1 (Length: 594)
Name: NF7641_high_1
Description: NF7641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7641_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 33 - 315
Target Start/End: Original strand, 33495035 - 33495317
Alignment:
| Q |
33 |
ttgtgtgcaactatttttcattcatttccaatcaaataattgannnnnnnnaacaatctaagataaaattttgaaacttgtattattaattttgatacaa |
132 |
Q |
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| T |
33495035 |
ttgtgtgcaactatttttcattcatttccaatcaaataattgattttttt-aacaatcaaagataaaattttgaaacttgtattattaattttgatacaa |
33495133 |
T |
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| Q |
133 |
aaaagcggatagacattcatgttagtaacgaa-ttatatatagtaatcacgtaaaattctgataaaagggtcataaagcaaaacaaaattttaattacct |
231 |
Q |
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| T |
33495134 |
aaaagcggatagacattcatgttagtaacgaaattatatatagtaatcacgtaaaattctgataaaagggtcataaagcaaaacaaaattttaattacct |
33495233 |
T |
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| Q |
232 |
ctcaacatgatgaagcagtgaaattaagatctaatcactgtcactgctgctgctatcatggccatgttcatgaccctctccatg |
315 |
Q |
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| T |
33495234 |
ctcaacatgatgaagcagtgaaattaagatctaatcactgtcactgctgctgctatcatgaccatgttcatgaccctctccatg |
33495317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 346 - 576
Target Start/End: Original strand, 33495348 - 33495578
Alignment:
| Q |
346 |
accatctgcaccttcaccatgaatcttgtccttgatcttgtcaacaaatccctccttgtgctcttctccatggtgtccttccttgtggtctccatgacca |
445 |
Q |
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| T |
33495348 |
accatctgcaccttcaccatgaatcttgtccttgatcttgtcaacaaatccctccttgtgctcttccccatggtgtccttccttgtggtctccatgacca |
33495447 |
T |
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| Q |
446 |
aatccatgttgctctcctttgtgctcaccaccatgtcctcctacaaatccatgttgttctcctttgtactcaccatggtgttctcctcctacatgtccat |
545 |
Q |
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| T |
33495448 |
aatccatgttgctctcctttgtgctcaccaccatgtcctcctacaaatccatgttgttctcctttgtactcaccgtggtgttctcctcctacatgtccat |
33495547 |
T |
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| Q |
546 |
gttgttctcctttgtgttctccctctttctt |
576 |
Q |
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| T |
33495548 |
gttgttctcctttgtgttctccctctttctt |
33495578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 286
Target Start/End: Complemental strand, 9757748 - 9757719
Alignment:
| Q |
257 |
aagatctaatcactgtcactgctgctgcta |
286 |
Q |
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| T |
9757748 |
aagatctaatcactgtcactgctgctgcta |
9757719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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