View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7641_low_2 (Length: 249)
Name: NF7641_low_2
Description: NF7641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7641_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 32062735 - 32062496
Alignment:
| Q |
1 |
cccactgagttcctttccactgttgttccccggtgctttctcctgcttcattaatcnnnnnnnccgaacaaaatctattggcttacctccttgtttctgt |
100 |
Q |
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| T |
32062735 |
cccactgagttcctttccactgttgttccccggtgctttctcctgcttcattaatctttttttccgaacaaaatctattggcttacctccttgtttctgt |
32062636 |
T |
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| Q |
101 |
ttgaggtcatcatcatcatcggcaaggattgaaaacccaccgaattcctttccactattgttctccagtgcattctcttgcttcaatgaccttttctttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
32062635 |
ttgaggtcatcatcatcatcggcaaggattgaaaacccaccgaattcctttccactattgttctccggtgcattctcttgcttcagtgaccttttctttc |
32062536 |
T |
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| Q |
201 |
taacaaagtctattggcttcccaaacatgttgttgatgtc |
240 |
Q |
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| T |
32062535 |
taacaaagtctattggcttcccaaacatgttgtttatgtc |
32062496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 113 - 219
Target Start/End: Complemental strand, 32062758 - 32062652
Alignment:
| Q |
113 |
tcatcatcggcaaggattgaaaacccaccgaattcctttccactattgttctccagtgcattctcttgcttcaatgaccttttctttctaacaaagtcta |
212 |
Q |
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|||||||| ||||| || |||||||||| || |||||||||||| |||||| || |||| ||||| ||||||| | | ||||| || | |||||| |||| |
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| T |
32062758 |
tcatcatccgcaagtatcgaaaacccactgagttcctttccactgttgttccccggtgctttctcctgcttcattaatctttttttccgaacaaaatcta |
32062659 |
T |
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| Q |
213 |
ttggctt |
219 |
Q |
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| T |
32062658 |
ttggctt |
32062652 |
T |
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