View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7641_low_4 (Length: 222)
Name: NF7641_low_4
Description: NF7641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7641_low_4 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 9278518 - 9278739
Alignment:
| Q |
1 |
ccagtaaacacttcaatgaaatcatcatcaaacaattaaacaaaatgaatcaaagcgagataattgcgaaggaatttagggtgaaatgagggagaacgat |
100 |
Q |
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| T |
9278518 |
ccagtaaacacttcaatgaaatcatcatcaaacaattaaacaaaatgaatcaaagcgagataattgcgaaggaatttagggtgaaatgagggagaacgat |
9278617 |
T |
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| Q |
101 |
aatggtaaaacaattgagatcatagggtttagagagatacgtgaaactttcactgatattttccatgaacaatttctagtattagaggttcctcgtcaaa |
200 |
Q |
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| T |
9278618 |
aatggtaaaacaattgagatcatagggtttagagagatacgtgaaactttcactgatattttccatgaacaatttctagtattagaggttcctcgtcaaa |
9278717 |
T |
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| Q |
201 |
caatatgcaatgaccattgtcc |
222 |
Q |
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| T |
9278718 |
caatatgcaatgaccattgtcc |
9278739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 2 - 140
Target Start/End: Original strand, 9275141 - 9275279
Alignment:
| Q |
2 |
cagtaaacacttcaatgaaatcatcatcaaacaattaaacaaaatgaatcaaagcgagataattgcgaaggaatttagggtgaaatgagggagaacgata |
101 |
Q |
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||||||||||| || |||||||||||||||| |||||||||||||||||||||| |||| ||| ||||| |||||||| ||||||||| ||||||| ||| |
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| T |
9275141 |
cagtaaacactccattgaaatcatcatcaaaaaattaaacaaaatgaatcaaagtgagaaaatcgcgaaagaatttagagtgaaatgatggagaacaata |
9275240 |
T |
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| Q |
102 |
atggtaaaacaattgagatcatagggtttagagagatac |
140 |
Q |
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| T |
9275241 |
atggtaaaacaattgagatcatagggttaagagggatac |
9275279 |
T |
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