View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7642_high_1 (Length: 500)
Name: NF7642_high_1
Description: NF7642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7642_high_1 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 219 - 500
Target Start/End: Complemental strand, 29996555 - 29996274
Alignment:
| Q |
219 |
atgatagacataaatacaacaccaaaatttgtataaatatgcagtttctgtagtagcctaggatttctatgctgctatttgttttgattggcacctctgg |
318 |
Q |
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| T |
29996555 |
atgatagacataaatacaacaccaaaatttgtataaatatgcagtttctgtagtagcctaggatttctatgctgctatttgttttgattggcacctcttg |
29996456 |
T |
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| Q |
319 |
agtctcgtgacataaaacggctttatatattctgtagtttctttattctaaaacaccaaatccagcaatatgtattatctccctagaagtatttaaaaag |
418 |
Q |
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| T |
29996455 |
agtctcgtgacataaaatggcattatatattctgtagtttctttattctaaaacaccaaatgcagcaatatgtattatctccctagaagtatttaaaaag |
29996356 |
T |
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| Q |
419 |
tgaaaatttatataatttatagtctctgaaaaagttattcttgaaagtgtgataatagcaacgcacccttttggatacactc |
500 |
Q |
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| T |
29996355 |
tgaaattttttataatttatagtctctgaaaaagttattcttgaaagtgcgataatagcaacggacccttttggatacactc |
29996274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 9 - 122
Target Start/End: Complemental strand, 29996775 - 29996662
Alignment:
| Q |
9 |
taactagttagtacttattcaatatgtgtctatcatatgatattctatgtcataacctatttcaatttcgatgtggatgtcttagctatttgaattatca |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29996775 |
taactagttagtacttattcaatatgtgtctatcatatgatattctatatcataacctatttcaatttcgatgtggatgtcttagctatttgaattatca |
29996676 |
T |
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| Q |
109 |
acatttattttcaa |
122 |
Q |
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| T |
29996675 |
acatttattttcaa |
29996662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 174 - 218
Target Start/End: Complemental strand, 29996640 - 29996596
Alignment:
| Q |
174 |
ctcgatttatcttgtacaacttattattaaacctaagagacataa |
218 |
Q |
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| T |
29996640 |
ctcgagttatcttgtacaacttattattaaacctaagagatataa |
29996596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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