View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7642_high_6 (Length: 311)
Name: NF7642_high_6
Description: NF7642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7642_high_6 |
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| [»] scaffold0031 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 13 - 301
Target Start/End: Complemental strand, 47651042 - 47650754
Alignment:
| Q |
13 |
attttgtcatatattttatttagttatggcacccccaaatcatgattcagagatacaacttccaaattcttcaaataacaatataagtcaacatcaagaa |
112 |
Q |
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| T |
47651042 |
attttgtcatatattttatttagttatggcacccccaaatcatgattcagagatacaacttccaaattcttcaaataacaatataagtcaacatcaagaa |
47650943 |
T |
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| Q |
113 |
ggtacttgattgatttgcttgactttaatttttatcttgaaatttcacattatacttctcttcactttcttttttgggtaaaaatgctatagaatgttct |
212 |
Q |
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| T |
47650942 |
ggtacttaattgatttgcttgactttaatttttatcttgaaatttcacattatacttctcttcactttcttttttgggtaaaaatgctatagaatgttct |
47650843 |
T |
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| Q |
213 |
aatgcacacaaagttggaagaggaagaactgttggcttaagtgttgcnnnnnnnnnnnngaagagcgctactggaaaattgcatgatgt |
301 |
Q |
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| T |
47650842 |
aatgcacacaaagttggaagaggaagaactgttggcttaagtgttgcaaaaaagaaaaagaagagcgctactggaaaattgcatgatgt |
47650754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 24 - 148
Target Start/End: Complemental strand, 92663 - 92539
Alignment:
| Q |
24 |
tattttatttagttatggcacccccaaatcatgattcagagatacaacttccaaattcttcaaataacaatataagtcaacatcaagaaggtacttgatt |
123 |
Q |
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|||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
92663 |
tattttatttagttatggcaatcccaagtcatgattcagagatgcaacttccaaattcttcaaataacaatataagtcaacatcaagaaggtacttaatt |
92564 |
T |
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| Q |
124 |
gatttgcttgactttaatttttatc |
148 |
Q |
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| T |
92563 |
gatttgcttgactttaatttttatc |
92539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 140 - 252
Target Start/End: Complemental strand, 92515 - 92401
Alignment:
| Q |
140 |
atttttatcttgaaatttcacattatacttctcttcactttctttttt--gggtaaaaatgctatagaatgttctaatgcacacaaagttggaagaggaa |
237 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
92515 |
atttttatcttgaaatttcacattatacttctcttcactttctttttttggggtaaaaatgctatagaatgttctaatgcacaaaaagttggaagaggaa |
92416 |
T |
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| Q |
238 |
gaactgttggcttaa |
252 |
Q |
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||||| || |||||| |
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| T |
92415 |
gaactattagcttaa |
92401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 37333398 - 37333358
Alignment:
| Q |
49 |
aaatcatgattcagagatacaacttccaaattcttcaaata |
89 |
Q |
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| T |
37333398 |
aaatcatgattccaagatacaacttcccaattcttcaaata |
37333358 |
T |
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