View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7642_low_10 (Length: 255)
Name: NF7642_low_10
Description: NF7642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7642_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 35512497 - 35512720
Alignment:
| Q |
13 |
aatataaggagaaattcagaagggcacttttgggttgctttgcattccnnnnnnnctccttttacgaagtggatatcttctaatctatgggctcgtaaag |
112 |
Q |
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| T |
35512497 |
aatataaggagaaattcagaagggcacttttgggttgctttgcattccaaaaaaactccttttacgaagtggatatcttctaatctatgggctcgtaaag |
35512596 |
T |
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| Q |
113 |
cattgttaaagcttagaaacttcaagccgttgcaagcgttgttggcgacgaagcctcatgctgcagctataaagctgagtgatgaaggggaaataataga |
212 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35512597 |
cattgttaaagcttagaaacttcaagcggttgcaagcgttgttggcgacaaagcctcatgctgcagctataaagctgagtgatgaaggggaaataataga |
35512696 |
T |
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| Q |
213 |
aagtctggaagatcgtgaagggaa |
236 |
Q |
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|||||||||||||||||||||||| |
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| T |
35512697 |
aagtctggaagatcgtgaagggaa |
35512720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 17 - 236
Target Start/End: Original strand, 35503869 - 35504088
Alignment:
| Q |
17 |
taaggagaaattcagaagggcacttttgggttgctttgcattccnnnnnnnctccttttacgaagtggatatcttctaatctatgggctcgtaaagcatt |
116 |
Q |
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|||||||||||||||||||||| |||||||||||||||||| || |||||||| | |||||||| ||||| ||||| |||||| |||||||||| |
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| T |
35503869 |
taaggagaaattcagaagggcaattttgggttgctttgcatgccaaagaaactccttttgcaaagtggatgtcttccaatctgtgggctggtaaagcatt |
35503968 |
T |
|
| Q |
117 |
gttaaagcttagaaacttcaagccgttgcaagcgttgttggcgacgaagcctcatgctgcagctataaagctgagtgatgaaggggaaataatagaaagt |
216 |
Q |
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| T |
35503969 |
gtcaaagcttggaaacttcaagtggttgcatgcgtcgttggcgatgaagcctcatgctgcagctataaagctgagtgatgaaggggaaatattagaagtc |
35504068 |
T |
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| Q |
217 |
ctggaagatcgtgaagggaa |
236 |
Q |
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||||||||| |||||||||| |
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| T |
35504069 |
ctggaagattgtgaagggaa |
35504088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 40161537 - 40161581
Alignment:
| Q |
13 |
aatataaggagaaattcagaagggcacttttgggttgctttgcat |
57 |
Q |
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| T |
40161537 |
aatataaggagaaattcagatgggcagttttgggttgctttgcat |
40161581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 40161584 - 40161633
Alignment:
| Q |
174 |
tgcagctataaagctgagtgatgaaggggaaataatagaaagtctggaag |
223 |
Q |
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||||||||||||| |||||||||||||||||||| |||||| | |||||| |
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| T |
40161584 |
tgcagctataaagttgagtgatgaaggggaaatattagaaattgtggaag |
40161633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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