View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7642_low_3 (Length: 431)
Name: NF7642_low_3
Description: NF7642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7642_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 102 - 412
Target Start/End: Complemental strand, 41875190 - 41874880
Alignment:
| Q |
102 |
actagaatcaactactatatggtaagaaaattactctttcttgctaaagaaagagtatattttgtttgtttctaccgaaagattatatacttattatagt |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
41875190 |
actagaatcaactactatatggtaagaaaattactctttcttgctacagaaagagtatattttgtttgtttctacagaaagattatatacttattatagt |
41875091 |
T |
|
| Q |
202 |
gtggattgtggaacttttctatgtgcgttgcacaaaccacaaaccatgtccgtgacagaggaaactgtctgagagagacaaattaaaggggatcagagaa |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||| |
|
|
| T |
41875090 |
gtggattgtggaacttttctatgtgcgttgcacaaaccacaaaccatgtccgtgacagaggaaactttctgagagagacaaattaagggggattagagaa |
41874991 |
T |
|
| Q |
302 |
tctatataatggaggacaaatattgaaatgtgaacatccattggatacagccttgtcattggcctgcccctcgtgattctatggattctgattcctctca |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41874990 |
tctatataatggaggacaaatattgaaatgtgaaaatccattggatacagccttgccattggcctgcccctcgtgattctatggattctgattcctctca |
41874891 |
T |
|
| Q |
402 |
gttttacaacc |
412 |
Q |
| |
|
||||||||||| |
|
|
| T |
41874890 |
gttttacaacc |
41874880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 41875290 - 41875258
Alignment:
| Q |
1 |
acattcaataaaatgtccaattaattcactaac |
33 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |
|
|
| T |
41875290 |
acattcaataaaatgtccaattaattcaataac |
41875258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University