View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7642_low_4 (Length: 403)
Name: NF7642_low_4
Description: NF7642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7642_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 11 - 386
Target Start/End: Complemental strand, 10612981 - 10612606
Alignment:
| Q |
11 |
aatacttacaaactctgacatacaaactgtagtaattggttccgacacacaccaaccaacttgaatggaatccatttcaataatatgttcaaaaggagta |
110 |
Q |
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| T |
10612981 |
aatacttacaaactctgacatacaaactgtagtaattggttccgacacacaccaaccaacttgaatggaatccatttcaataatatgttcaaaaggagta |
10612882 |
T |
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| Q |
111 |
tatgttacacaatccagctaacaaaaatctgaaagtaaacaagaaactaacatcaaacttcagcttcaatcacgttcaatcttaagcggacaatataata |
210 |
Q |
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| T |
10612881 |
tatgttacacaatccagctaacaaaaatctgaaagtaaacaagaaactaacctcaaacttcagcttcaatcatgttcaatcttaagcggacaatataata |
10612782 |
T |
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| Q |
211 |
cacacaagattgctacatatttgtttcttgtgtgtttattgtgacatacttgttcgagcccgatcaacttagggatagggatcagtttactcaagttata |
310 |
Q |
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| T |
10612781 |
cacacaagattgctacatatttgtttcttgtatgtttattgtgacatacttgttcgagcccgatcaacttagggatagggatcagtttactcaagttata |
10612682 |
T |
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| Q |
311 |
aaaatgatgagtaaatggaaatcaagagttaatatgatattttagttaatggacacattaaactagcctaaatctt |
386 |
Q |
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| T |
10612681 |
aaaatgatgagtaaatggaaatcaagagttaatatgatattttagttaatggacacattaaactagcctaaatctt |
10612606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 11 - 221
Target Start/End: Complemental strand, 10610395 - 10610186
Alignment:
| Q |
11 |
aatacttacaaactctgacatacaaactgtagtaattggttccgacacacaccaaccaacttgaatggaatccatttcaataatatgttcaaaaggagta |
110 |
Q |
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|||||| |||||||||| |||| || |||| || || ||||| |||||||||||||||||||||| || ||||||||||||||||||||||||| | || |
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| T |
10610395 |
aatactaacaaactctgccatatgaagtgtaatacttcgttcccacacacaccaaccaacttgaatagattccatttcaataatatgttcaaaagtaata |
10610296 |
T |
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| Q |
111 |
tatgttacacaatccagctaacaaaaatctgaaagtaaacaagaaactaacatcaaacttcagcttcaatcacgttcaatcttaagcggacaatataata |
210 |
Q |
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||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
10610295 |
tatgttacacaattcag-taactaaaatctgaaagtaaacaagaaactaacatcaaacttcagcttcaatcatgttcaatcttaagctaacaatataata |
10610197 |
T |
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| Q |
211 |
cacacaagatt |
221 |
Q |
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| T |
10610196 |
cacacaagatt |
10610186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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