View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7642_low_8 (Length: 267)
Name: NF7642_low_8
Description: NF7642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7642_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 7623308 - 7623078
Alignment:
| Q |
13 |
aatattaaacaggtgccatgaaagttacaaattagagaactatttgtgagaatttgtgaaaacaatttatgatattttcataaattgtttattagtttat |
112 |
Q |
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| T |
7623308 |
aatattaaacaggtgccatgaaagttacaaattggagaactatttgtga----------aaacaatttatgatattttcataaattgtttattagtttat |
7623219 |
T |
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| Q |
113 |
ttccataaactcttaatannnnnnnncttcttaatcttccggttctccgaagaaggaagcatattaatctaaaattcaattggaatataaatacttgaaa |
212 |
Q |
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| T |
7623218 |
ttccataaactcttaatattttttgt-ttcttaatcttccggttcttcgaagaaggaagcatattaacct-aaattcaattggaagataaatacttgaaa |
7623121 |
T |
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| Q |
213 |
ctccgatta-----caaggtttgttgaaagtcatcaaccattt |
250 |
Q |
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| T |
7623120 |
ctccgattatatcgaacggtttgttgaaagtcatcaaccattt |
7623078 |
T |
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