View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7642_low_9 (Length: 266)
Name: NF7642_low_9
Description: NF7642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7642_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 38231553 - 38231305
Alignment:
| Q |
1 |
cataaagatcctcaactcacaaacaaatccaaagaaaccaaaaccaaattcataacataattctaatattctgttgtaattggctcggcttcaaatcaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
38231553 |
cataaagatcctcaactcacaaacaaatccaaagaaaccaaaaccaaattcataacataattctaattttctgttgtaattggctcggcttcaaatcaaa |
38231454 |
T |
|
| Q |
101 |
gctcccaatcatttccattgtttcttcatgtgtagaaataccacttgcaaggctgaagcaagtttgatcttttttcttttacatgaaaaaatttcaaatc |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| | |
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| T |
38231453 |
gctcccaaatgtttccattgtttcttcatgtgtagaaataccacttgcaaggctgaagcaagtttgatcttttttcttttacat--aaaaaattcaaaac |
38231356 |
T |
|
| Q |
201 |
ccaaaaaccactaccaagcaagctaagtataagagtttgctattatttgat |
251 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38231355 |
ccaaaaaccactaccaagcaagctaagtataagagtttgctattatttgat |
38231305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 35 - 222
Target Start/End: Original strand, 19831011 - 19831194
Alignment:
| Q |
35 |
aaaccaaaaccaaattcataacataattctaatattctgttgtaattggctcggcttcaaatcaaagctcccaatcatttccattgtttcttcatg-tgt |
133 |
Q |
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|||||||||||||||||||| ||| ||||||| ||||| |||||||||||| ||||||||| ||||| |||||| ||| ||||||| | || | | |
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| T |
19831011 |
aaaccaaaaccaaattcatatgata-ttctaattttctgctgtaattggctctacttcaaatccaagcttccaatcccttctattgtttttccaagccat |
19831109 |
T |
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| Q |
134 |
agaaataccacttgcaaggctgaagcaagtttgatcttttttcttttacatgaaaaaatttcaaatcccaaaaaccactaccaagcaag |
222 |
Q |
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| T |
19831110 |
agaaataccacttgcaacgttgaagcaagttcaatctttt---tttaacatgagaaaa-ttcaaaacccaaagaccattacgaagcaag |
19831194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 55863089 - 55862915
Alignment:
| Q |
1 |
cataaagatcctcaactcacaaacaaatccaaagaaaccaaaaccaaattcataacataattctaatattctgttgtaattggctcggcttcaaatcaaa |
100 |
Q |
| |
|
|||||||| |||||| ||||||||||| |||||||||||||||| | ||| | | | ||||||| ||||||||||||||||| |||||||||| || |
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| T |
55863089 |
cataaagaacctcaattcacaaacaaacccaaagaaaccaaaactagtttcctgtcgtg-ttctaattttctgttgtaattggctatgcttcaaatccaa |
55862991 |
T |
|
| Q |
101 |
gctcccaatcatttccattgtttcttcatgt-gtagaaataccacttgcaaggctgaagcaagtttgatctttttt |
175 |
Q |
| |
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||| || |||| ||| ||| |||| |||||| ||||||| ||| | |||||||||||||||||||| ||| |||| |
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| T |
55862990 |
gctacctatcacttctattatttcatcatgtcatagaaatgccattggcaaggctgaagcaagtttggtctatttt |
55862915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 30152093 - 30152154
Alignment:
| Q |
1 |
cataaagatcctcaactcacaaacaaatccaaagaaaccaaaaccaaattcataacataatt |
62 |
Q |
| |
|
|||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
30152093 |
cataaagaacctcaacttacaaacaaacccaaagaaaccaaaaccaaattcataacataatt |
30152154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 203 - 248
Target Start/End: Original strand, 30152184 - 30152229
Alignment:
| Q |
203 |
aaaaaccactaccaagcaagctaagtataagagtttgctattattt |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30152184 |
aaaaaccactaccaagcaagctaagtataagagtttgctattattt |
30152229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 7694875 - 7694936
Alignment:
| Q |
1 |
cataaagatcctcaactcacaaacaaatccaaagaaaccaaaaccaaattcataacataatt |
62 |
Q |
| |
|
|||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
7694875 |
cataaagaacctcaacttacaaacaaacccaaagaaaccaaaaccaaattcataacataatt |
7694936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 203 - 248
Target Start/End: Original strand, 7694966 - 7695011
Alignment:
| Q |
203 |
aaaaaccactaccaagcaagctaagtataagagtttgctattattt |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7694966 |
aaaaaccactaccaagcaagctaagtataagagtttgctattattt |
7695011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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