View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7643_low_1 (Length: 413)

Name: NF7643_low_1
Description: NF7643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7643_low_1
NF7643_low_1
[»] chr4 (11 HSPs)
chr4 (1-413)||(32189588-32189990)
chr4 (68-134)||(48620471-48620539)
chr4 (66-111)||(55813451-55813496)
chr4 (68-108)||(29114065-29114105)
chr4 (68-108)||(33500740-33500780)
chr4 (66-109)||(15451157-15451200)
chr4 (68-111)||(35959383-35959426)
chr4 (68-107)||(37969565-37969604)
chr4 (68-108)||(12708656-12708696)
chr4 (68-108)||(30198593-30198633)
chr4 (68-108)||(38136656-38136696)
[»] chr2 (8 HSPs)
chr2 (68-136)||(15803361-15803431)
chr2 (68-108)||(13018300-13018340)
chr2 (68-108)||(31083017-31083057)
chr2 (72-136)||(36870426-36870493)
chr2 (68-108)||(43572366-43572406)
chr2 (66-136)||(31584587-31584659)
chr2 (63-108)||(40212222-40212267)
chr2 (68-108)||(1365042-1365082)
[»] chr5 (5 HSPs)
chr5 (68-130)||(35708617-35708681)
chr5 (68-124)||(4841530-4841588)
chr5 (66-108)||(13569581-13569623)
chr5 (68-108)||(10843253-10843293)
chr5 (68-108)||(39649790-39649830)
[»] chr3 (9 HSPs)
chr3 (68-136)||(53888675-53888745)
chr3 (68-136)||(35283276-35283346)
chr3 (68-108)||(5939603-5939643)
chr3 (68-108)||(44400918-44400958)
chr3 (68-108)||(48908714-48908754)
chr3 (68-130)||(27922108-27922173)
chr3 (79-136)||(9768364-9768424)
chr3 (68-108)||(33944462-33944502)
chr3 (72-108)||(37673979-37674015)
[»] chr1 (8 HSPs)
chr1 (68-136)||(49102797-49102867)
chr1 (66-136)||(42806358-42806430)
chr1 (68-108)||(2909336-2909376)
chr1 (68-108)||(37649438-37649478)
chr1 (68-108)||(52067969-52068009)
chr1 (66-136)||(6538176-6538247)
chr1 (68-134)||(43036145-43036213)
chr1 (72-108)||(17557011-17557047)
[»] chr7 (6 HSPs)
chr7 (66-134)||(46611705-46611773)
chr7 (68-136)||(22556527-22556596)
chr7 (68-108)||(42254187-42254227)
chr7 (66-136)||(32820049-32820121)
chr7 (68-108)||(4057968-4058008)
chr7 (68-108)||(38505166-38505206)
[»] scaffold0128 (1 HSPs)
scaffold0128 (59-108)||(26600-26649)
[»] chr8 (4 HSPs)
chr8 (68-136)||(39780006-39780074)
chr8 (68-111)||(27085580-27085623)
chr8 (68-111)||(27097385-27097428)
chr8 (68-108)||(23932370-23932410)
[»] scaffold0598 (1 HSPs)
scaffold0598 (85-136)||(9241-9294)
[»] chr6 (1 HSPs)
chr6 (68-108)||(32719121-32719161)


Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 413
Target Start/End: Complemental strand, 32189990 - 32189588
Alignment:
Q  1 attgcattagtatgtggagatgattaaggttcaaacaatatatttgatatttatttatcttaaaagttttgtttggaagtttggaggggagggaaaggaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  32189990 attgcattagtatgtggagatgattaaggttcaaacaatatattttatatttatttatcttaaaagttttgtttgggagtttggaggagagggaaaggaa 32189891  T
Q  101 aggctttggggagaga--aatatagggggaaattgagactatagtaaacaaaagtttgattagaagtaagtaaagtttgatcaataattttgtttctata 198  Q
    ||||||||| ||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  32189890 aggctttggagagagagaaatataggggaaaattgagactatagtaaacaaaagtttgattagaagtaagtaaagtttgatcaataattttgtttatata 32189791  T
Q  199 aaaaattaaacttgggttctcttaaacaattcgtcgtagatgaagcttattaatcacttaagttcaatcacttaacaatagagattgaactcgataacaa 298  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||    
T  32189790 aaaaattgaacttgggttctcttaaacaatttgtcgtagatgaagcttattaatcacttaagtt-----------caatagagattgaactcgataacaa 32189702  T
Q  299 gaaatatgtggagatgannnnnnnnnnnaatctataaaaactaatatgttgtgaactcggccaaattatttagagttcaatagctcatttactttttcaa 398  Q
    |||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||    
T  32189701 gaaatatgtggagatga-tcttttttttaatctataaaaactaatatgttgtgaactcggccaaattatttagagctcaatagctcatttactttgtaaa 32189603  T
Q  399 catattttctatttt 413  Q
     ||||||||||||||    
T  32189602 aatattttctatttt 32189588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 134
Target Start/End: Complemental strand, 48620539 - 48620471
Alignment:
Q  68 tttgtttggaagtttggaggggagggaaaggaaaggcttt--ggggagagaaatatagggggaaattga 134  Q
    ||||||||  |||||||||||||||| |||||||||||||  ||||||||||||||||||  |||||||    
T  48620539 tttgtttgcgagtttggaggggaggggaaggaaaggctttggggggagagaaatatagggaaaaattga 48620471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 111
Target Start/End: Original strand, 55813451 - 55813496
Alignment:
Q  66 gttttgtttggaagtttggaggggagggaaaggaaaggctttgggg 111  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||    
T  55813451 gttttgtttggaagtttggaggggagtgaaagaaaaggctttgggg 55813496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 108
Target Start/End: Original strand, 29114065 - 29114105
Alignment:
Q  68 tttgtttggaagtttggaggggagggaaaggaaaggctttg 108  Q
    ||||||||| ||||||||||||| |||||||||||||||||    
T  29114065 tttgtttgggagtttggaggggaaggaaaggaaaggctttg 29114105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 108
Target Start/End: Complemental strand, 33500780 - 33500740
Alignment:
Q  68 tttgtttggaagtttggaggggagggaaaggaaaggctttg 108  Q
    ||||||||| ||||||||||||| |||||||||||||||||    
T  33500780 tttgtttgggagtttggaggggaaggaaaggaaaggctttg 33500740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 66 - 109
Target Start/End: Original strand, 15451157 - 15451200
Alignment:
Q  66 gttttgtttggaagtttggaggggagggaaaggaaaggctttgg 109  Q
    |||||||||||||||||||||||||||  ||||||||| |||||    
T  15451157 gttttgtttggaagtttggaggggaggagaaggaaaggttttgg 15451200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 68 - 111
Target Start/End: Complemental strand, 35959426 - 35959383
Alignment:
Q  68 tttgtttggaagtttggaggggagggaaaggaaaggctttgggg 111  Q
    ||||||||| ||||||||||||||||  ||||||||||||||||    
T  35959426 tttgtttgggagtttggaggggaggggtaggaaaggctttgggg 35959383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 68 - 107
Target Start/End: Original strand, 37969565 - 37969604
Alignment:
Q  68 tttgtttggaagtttggaggggagggaaaggaaaggcttt 107  Q
    |||||||||||||||||||||||||| |||||||| ||||    
T  37969565 tttgtttggaagtttggaggggaggggaaggaaagacttt 37969604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 108
Target Start/End: Original strand, 12708656 - 12708696
Alignment:
Q  68 tttgtttggaagtttggaggggagggaaaggaaaggctttg 108  Q
    ||||||||| ||||||||||| | |||||||||||||||||    
T  12708656 tttgtttgggagtttggagggaaaggaaaggaaaggctttg 12708696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 108
Target Start/End: Original strand, 30198593 - 30198633
Alignment:
Q  68 tttgtttggaagtttggaggggagggaaaggaaaggctttg 108  Q
    ||||||||| ||||||||| ||| |||||||||||||||||    
T  30198593 tttgtttgggagtttggagaggaaggaaaggaaaggctttg 30198633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 108
Target Start/End: Original strand, 38136656 - 38136696
Alignment:
Q  68 tttgtttggaagtttggaggggagggaaaggaaaggctttg 108  Q
    ||||||||| ||||||||||||| || ||||||||||||||    
T  38136656 tttgtttgggagtttggaggggaagggaaggaaaggctttg 38136696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 68 - 136
Target Start/End: Complemental strand, 15803431 - 15803361
Alignment:
Q  68 tttgtttggaagtttggaggggagggaaaggaaaggcttt--ggggagagaaatatagggggaaattgaga 136  Q
    ||||||||| |||||||||||||||| |||||||||||||  ||||||||||||||||||| |||||||||    
T  15803431 tttgtttgggagtttggaggggaggggaaggaaaggctttggggggagagaaatataggggaaaattgaga 15803361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 108
Target Start/End: Original strand, 13018300 - 13018340
Alignment:
Q  68 tttgtttggaagtttggaggggagggaaaggaaaggctttg 108  Q
    ||||||||| ||||||||||||| |||||||||||||||||    
T  13018300 tttgtttgggagtttggaggggaaggaaaggaaaggctttg 13018340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 108
Target Start/End: Complemental strand, 31083057 - 31083017
Alignment:
Q  68 tttgtttggaagtttggaggggagggaaaggaaaggctttg 108  Q
    ||||||||| |||||||||||||||| ||||||||||||||    
T  31083057 tttgtttgggagtttggaggggaggggaaggaaaggctttg 31083017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 136
Target Start/End: Complemental strand, 36870493 - 36870426
Alignment:
Q  72 tttggaagtttggaggggagg-gaaaggaaaggctttggggagagaaa--tatagggggaaattgaga 136  Q
    ||||| ||||||||||||||| | ||||||||||||||||| ||||||  |||||||| |||||||||    
T  36870493 tttgggagtttggaggggaggaggaaggaaaggctttggggggagaaaaatataggggaaaattgaga 36870426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 108
Target Start/End: Original strand, 43572366 - 43572406
Alignment:
Q  68 tttgtttggaagtttggaggggagggaaaggaaaggctttg 108  Q
    ||||||||| ||||||||||||| |||||||||||||||||    
T  43572366 tttgtttgggagtttggaggggaaggaaaggaaaggctttg 43572406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 136
Target Start/End: Original strand, 31584587 - 31584659
Alignment:
Q  66 gttttgtttggaagtttggaggggagggaaaggaaaggcttt--ggggagagaaatatagggggaaattgaga 136  Q
    ||||||||||  |||||||||||||||| ||| |||| ||||  |||||||||||||||| |  |||||||||    
T  31584587 gttttgtttgagagtttggaggggaggggaagaaaagactttgaggggagagaaatatagagaaaaattgaga 31584659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 108
Target Start/End: Complemental strand, 40212267 - 40212222
Alignment:
Q  63 aaagttttgtttggaagtttggaggggagggaaaggaaaggctttg 108  Q
    |||| ||||||||| ||||||||||||| |||||| ||||||||||    
T  40212267 aaagctttgtttgggagtttggaggggaaggaaagaaaaggctttg 40212222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 108
Target Start/End: Complemental strand, 1365082 - 1365042
Alignment:
Q  68 tttgtttggaagtttggaggggagggaaaggaaaggctttg 108  Q
    ||||||||  ||||||||||||| |||||||||||||||||    
T  1365082 tttgtttgcgagtttggaggggaaggaaaggaaaggctttg 1365042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 68 - 130
Target Start/End: Original strand, 35708617 - 35708681
Alignment:
Q  68 tttgtttggaagtttggaggggagggaaaggaaaggctttggg--gagagaaatatagggggaaa 130  Q
    ||||||||| |||||| ||||||||| ||||||||||||||||  ||||||||||||||||||||    
T  35708617 tttgtttgggagtttgaaggggaggggaaggaaaggctttggggagagagaaatatagggggaaa 35708681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 68 - 124
Target Start/End: Original strand, 4841530 - 4841588
Alignment:
Q  68 tttgtttggaagtttggaggggagggaaaggaaaggcttt--ggggagagaaatatagg 124  Q
    ||||||||| |||||||||||||||| || ||||||||||   ||||||||||||||||    
T  4841530 tttgtttgggagtttggaggggaggggaaagaaaggctttcgagggagagaaatatagg 4841588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 13569623 - 13569581
Alignment:
Q  66 gttttgtttggaagtttggaggggagggaaaggaaaggctttg 108  Q
    ||||||||||| ||||||||||||| ||||||||||| |||||    
T  13569623 gttttgtttgggagtttggaggggaaggaaaggaaagactttg 13569581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 108
Target Start/End: Complemental strand, 10843293 - 10843253
Alignment:
Q  68 tttgtttggaagtttggaggggagggaaaggaaaggctttg 108  Q
    ||||||||| ||||||||||||| ||| |||||||||||||    
T  10843293 tttgtttgggagtttggaggggaaggagaggaaaggctttg 10843253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 108
Target Start/End: Complemental strand, 39649830 - 39649790
Alignment:
Q  68 tttgtttggaagtttggaggggagggaaaggaaaggctttg 108  Q
    ||||||||| ||||||||||||| ||||||| |||||||||    
T  39649830 tttgtttggtagtttggaggggaaggaaaggtaaggctttg 39649790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 68 - 136
Target Start/End: Complemental strand, 53888745 - 53888675
Alignment:
Q  68 tttgtttggaagtttggaggggagggaaaggaaaggctttgg--ggagagaaatatagggggaaattgaga 136  Q
    ||||||||| |||||||||||||||| |||||||||||||||  ||| | ||||||||||| |||||||||    
T  53888745 tttgtttgggagtttggaggggaggggaaggaaaggctttgggtggacaaaaatataggggaaaattgaga 53888675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 68 - 136
Target Start/End: Complemental strand, 35283346 - 35283276
Alignment:
Q  68 tttgtttggaagtttggaggggagggaaaggaaaggcttt--ggggagagaaatatagggggaaattgaga 136  Q
    ||||||||| |||||||||||||||| ||||||||| |||  |||||||||| |||||| | |||||||||    
T  35283346 tttgtttgggagtttggaggggaggggaaggaaaggattttgggggagagaagtataggagaaaattgaga 35283276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 108
Target Start/End: Original strand, 5939603 - 5939643
Alignment:
Q  68 tttgtttggaagtttggaggggagggaaaggaaaggctttg 108  Q
    ||||||||| ||||||||||||| |||||||||||||||||    
T  5939603 tttgtttgggagtttggaggggaaggaaaggaaaggctttg 5939643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 108
Target Start/End: Complemental strand, 44400958 - 44400918
Alignment:
Q  68 tttgtttggaagtttggaggggagggaaaggaaaggctttg 108  Q
    ||||||||| ||||||||||||| |||||||||||||||||    
T  44400958 tttgtttgggagtttggaggggaaggaaaggaaaggctttg 44400918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 108
Target Start/End: Original strand, 48908714 - 48908754
Alignment:
Q  68 tttgtttggaagtttggaggggagggaaaggaaaggctttg 108  Q
    ||||||||| ||||||||||||| |||||||||||||||||    
T  48908714 tttgtttgggagtttggaggggaaggaaaggaaaggctttg 48908754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 68 - 130
Target Start/End: Complemental strand, 27922173 - 27922108
Alignment:
Q  68 tttgtttggaagtttggaggggagggaaaggaaaggctttggggag---agaaatatagggggaaa 130  Q
    ||||||||| |||||| ||||||||| ||||||||| ||||||| |   |||||||||||||||||    
T  27922173 tttgtttgggagtttgaaggggaggggaaggaaaggatttgggggggtgagaaatatagggggaaa 27922108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 136
Target Start/End: Complemental strand, 9768424 - 9768364
Alignment:
Q  79 gtttggaggggagggaaaggaaaggctttggg---gagagaaatatagggggaaattgaga 136  Q
    ||||||||||||||| ||| |||| |||||||   |||||||||||||||| |||||||||    
T  9768424 gtttggaggggaggggaagcaaagactttgggaaggagagaaatataggggaaaattgaga 9768364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 108
Target Start/End: Original strand, 33944462 - 33944502
Alignment:
Q  68 tttgtttggaagtttggaggggagggaaaggaaaggctttg 108  Q
    ||||||||| ||||||||||| | |||||||||||||||||    
T  33944462 tttgtttgggagtttggagggaaaggaaaggaaaggctttg 33944502  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 37673979 - 37674015
Alignment:
Q  72 tttggaagtttggaggggagggaaaggaaaggctttg 108  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  37673979 tttgggagtttggaggggaaggaaaggaaaggctttg 37674015  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 68 - 136
Target Start/End: Original strand, 49102797 - 49102867
Alignment:
Q  68 tttgtttggaagtttggaggggagggaaaggaaaggcttt--ggggagagaaatatagggggaaattgaga 136  Q
    ||||||||| |||||||||||||||| |||||| ||||||  ||||||||||||||||||  |||||||||    
T  49102797 tttgtttgggagtttggaggggaggggaaggaagggctttggggggagagaaatatagggaaaaattgaga 49102867  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 66 - 136
Target Start/End: Complemental strand, 42806430 - 42806358
Alignment:
Q  66 gttttgtttggaagtttggaggggagggaaaggaaaggctttggg--gagagaaatatagggggaaattgaga 136  Q
    ||||||||||| |||||||||||||| | ||| ||| | ||||||  |||||||||||||||| |||||||||    
T  42806430 gttttgtttgggagtttggaggggagaggaagaaaaagttttgggaggagagaaatataggggtaaattgaga 42806358  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 108
Target Start/End: Complemental strand, 2909376 - 2909336
Alignment:
Q  68 tttgtttggaagtttggaggggagggaaaggaaaggctttg 108  Q
    ||||||||| ||||||||||||| |||||||||||||||||    
T  2909376 tttgtttgggagtttggaggggaaggaaaggaaaggctttg 2909336  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 108
Target Start/End: Original strand, 37649438 - 37649478
Alignment:
Q  68 tttgtttggaagtttggaggggagggaaaggaaaggctttg 108  Q
    ||||||||| ||||||||||||| |||||||||||||||||    
T  37649438 tttgtttgggagtttggaggggaaggaaaggaaaggctttg 37649478  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 108
Target Start/End: Original strand, 52067969 - 52068009
Alignment:
Q  68 tttgtttggaagtttggaggggagggaaaggaaaggctttg 108  Q
    ||||||||||||||||||||||| ||||| |||||||||||    
T  52067969 tttgtttggaagtttggaggggaaggaaaagaaaggctttg 52068009  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 66 - 136
Target Start/End: Complemental strand, 6538247 - 6538176
Alignment:
Q  66 gttttgtttggaagtttggaggggagggaaaggaaaggctttg-gggagagaaatatagggggaaattgaga 136  Q
    |||||||||||||||||| |||||| || |||||||| |||||  ||||| ||||| ||||| |||||||||    
T  6538247 gttttgtttggaagtttgaaggggaagggaaggaaagactttgaaggagataaatacaggggaaaattgaga 6538176  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 134
Target Start/End: Original strand, 43036145 - 43036213
Alignment:
Q  68 tttgtttggaagtttggaggggagggaaaggaaaggctt--tggggagagaaatatagggggaaattga 134  Q
    ||||||||| |||||||||||||||| |||||| |||||  ||||| |||||||| | ||| |||||||    
T  43036145 tttgtttgggagtttggaggggaggggaaggaagggctttgtggggtgagaaatagaagggaaaattga 43036213  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 17557047 - 17557011
Alignment:
Q  72 tttggaagtttggaggggagggaaaggaaaggctttg 108  Q
    ||||| |||||||||||||||| ||||||||||||||    
T  17557047 tttgggagtttggaggggaggggaaggaaaggctttg 17557011  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 66 - 134
Target Start/End: Original strand, 46611705 - 46611773
Alignment:
Q  66 gttttgtttggaagtttggaggggagggaaaggaaaggctttggggagagaaatatagggggaaattga 134  Q
    |||||||||| |||||||||||||| |  ||| || |||||||||| |||| |||||||||||||||||    
T  46611705 gttttgtttgcaagtttggaggggaagagaagaaatggctttggggtgagagatatagggggaaattga 46611773  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 68 - 136
Target Start/End: Original strand, 22556527 - 22556596
Alignment:
Q  68 tttgtttggaagtttggaggggagggaaaggaaaggct-ttggggagagaaatatagggggaaattgaga 136  Q
    |||||||| ||||||||||||||||  ||||||||||| | ||||| ||||||||||||  |||||||||    
T  22556527 tttgtttgtaagtttggaggggaggagaaggaaaggctctcggggatagaaatatagggaaaaattgaga 22556596  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 108
Target Start/End: Complemental strand, 42254227 - 42254187
Alignment:
Q  68 tttgtttggaagtttggaggggagggaaaggaaaggctttg 108  Q
    ||||||||| ||||||||||||| |||||||||||||||||    
T  42254227 tttgtttgggagtttggaggggaaggaaaggaaaggctttg 42254187  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 136
Target Start/End: Original strand, 32820049 - 32820121
Alignment:
Q  66 gttttgtttggaagtttggaggggagggaaaggaaaggctttgg--ggagagaaatatagggggaaattgaga 136  Q
    ||||| ||||||||||||||||| |||| |||||| ||||||||  || | ||||||||| ||||||| ||||    
T  32820049 gttttatttggaagtttggagggaaggggaaggaagggctttgggaggtgggaaatatagagggaaatagaga 32820121  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 108
Target Start/End: Original strand, 4057968 - 4058008
Alignment:
Q  68 tttgtttggaagtttggaggggagggaaaggaaaggctttg 108  Q
    ||||||||||||||||||||||| |||||| |||| |||||    
T  4057968 tttgtttggaagtttggaggggaaggaaagaaaagactttg 4058008  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 108
Target Start/End: Original strand, 38505166 - 38505206
Alignment:
Q  68 tttgtttggaagtttggaggggagggaaaggaaaggctttg 108  Q
    ||||||||| |||||||||||||||| |||| |||||||||    
T  38505166 tttgtttgggagtttggaggggaggggaagggaaggctttg 38505206  T

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Target: scaffold0128 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 26649 - 26600
Alignment:
Q  59 cttaaaagttttgtttggaagtttggaggggagggaaaggaaaggctttg 108  Q
    |||||| | ||||||||| ||||||||||||| |||||||||||||||||    
T  26649 cttaaaggctttgtttgggagtttggaggggaaggaaaggaaaggctttg 26600  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 136
Target Start/End: Complemental strand, 39780074 - 39780006
Alignment:
Q  68 tttgtttggaagtttggaggggagggaaaggaaaggctttggggagagaaatatagggggaaattgaga 136  Q
    ||||||||| ||||||||||||||||||||||| ||| ||||| | | |||||||| |  |||||||||    
T  39780074 tttgtttgggagtttggaggggagggaaaggaagggcgttgggcacaaaaatatagagaaaaattgaga 39780006  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 68 - 111
Target Start/End: Complemental strand, 27085623 - 27085580
Alignment:
Q  68 tttgtttggaagtttggaggggagggaaaggaaaggctttgggg 111  Q
    ||||||||| |||||| ||||||| |||||||||||||||||||    
T  27085623 tttgtttgggagtttgtaggggagagaaaggaaaggctttgggg 27085580  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 68 - 111
Target Start/End: Complemental strand, 27097428 - 27097385
Alignment:
Q  68 tttgtttggaagtttggaggggagggaaaggaaaggctttgggg 111  Q
    ||||||||| |||||| ||||||| |||||||||||||||||||    
T  27097428 tttgtttgggagtttgtaggggagagaaaggaaaggctttgggg 27097385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 108
Target Start/End: Original strand, 23932370 - 23932410
Alignment:
Q  68 tttgtttggaagtttggaggggagggaaaggaaaggctttg 108  Q
    ||||||||| ||||| ||||||| |||||||||||||||||    
T  23932370 tttgtttgggagttttgaggggaaggaaaggaaaggctttg 23932410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0598 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 136
Target Start/End: Original strand, 9241 - 9294
Alignment:
Q  85 aggggagggaaaggaaaggctttggg--gagagaaatatagggggaaattgaga 136  Q
    ||||||||| ||| ||||| ||||||  ||||||||||||||||||||||||||    
T  9241 aggggaggggaagcaaaggttttgggaggagagaaatatagggggaaattgaga 9294  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 108
Target Start/End: Original strand, 32719121 - 32719161
Alignment:
Q  68 tttgtttggaagtttggaggggagggaaaggaaaggctttg 108  Q
    ||||||||| ||||| ||||||| |||||||||||||||||    
T  32719121 tttgtttgggagtttagaggggaaggaaaggaaaggctttg 32719161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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