View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7643_low_2 (Length: 382)
Name: NF7643_low_2
Description: NF7643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7643_low_2 |
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| [»] scaffold0764 (2 HSPs) |
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| [»] scaffold0313 (4 HSPs) |
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| [»] scaffold1531 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 170; Significance: 4e-91; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 15 - 192
Target Start/End: Complemental strand, 27162403 - 27162226
Alignment:
| Q |
15 |
aaagtcaggaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaaggaagagtctgatgatgaaatggctgattccccaccaaaggatg |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27162403 |
aaagtcaggaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaaagaagagtctgatgatgaaatggctgattccccaccaaaggatg |
27162304 |
T |
|
| Q |
115 |
gtgaaccctctgatgtaaatcttttccaagatattgctgaaaatgcaaaggaaatccttcagcaaaatgcagaagatc |
192 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27162303 |
gtgaaccctctgatataaatcttttccaagatattgctgaaaatgcaaaggaaatccttcagcaaaatgcagaagatc |
27162226 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 313 - 367
Target Start/End: Complemental strand, 27162108 - 27162054
Alignment:
| Q |
313 |
ttgctgcaatctctgaagaggaacttcagaatgttgactcaactgatgttgctga |
367 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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|
| T |
27162108 |
ttgctgcaatctctgaagaggaacttcagaatgttgactcaactgctgctgctga |
27162054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 12 - 192
Target Start/End: Original strand, 20955782 - 20955962
Alignment:
| Q |
12 |
gagaaagtcaggaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaaggaagagtctgatgatgaaatggctgattccccaccaaagg |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
20955782 |
gagaaagtcaggaatctttcaagcattcaaagacaagaggaagaaaactcttctgaaaaagaagagtctgatgatgaaatggctgattccccaccaaagg |
20955881 |
T |
|
| Q |
112 |
atggtgaaccctctgatgtaaatcttttccaagatattgctgaaaatgcaaaggaaatccttcagcaaaatgcagaagatc |
192 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20955882 |
atggtgaatcctctgatgtaaatcttttccaagatattgctgaaaatgcaaaggaaatccttcagcaaaatgcagaagatc |
20955962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 313 - 357
Target Start/End: Original strand, 20956080 - 20956124
Alignment:
| Q |
313 |
ttgctgcaatctctgaagaggaacttcagaatgttgactcaactg |
357 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20956080 |
ttgctgcaatctctgaagaggaacttcagaatgttgactcaactg |
20956124 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 162; Significance: 2e-86; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 15 - 192
Target Start/End: Complemental strand, 1977167 - 1976990
Alignment:
| Q |
15 |
aaagtcaggaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaaggaagagtctgatgatgaaatggctgattccccaccaaaggatg |
114 |
Q |
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|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1977167 |
aaagtcagaaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaaggaagagtctgatgatgaaatggctgattccccaccaaaggatg |
1977068 |
T |
|
| Q |
115 |
gtgaaccctctgatgtaaatcttttccaagatattgctgaaaatgcaaaggaaatccttcagcaaaatgcagaagatc |
192 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
1977067 |
gtgaaccctctgatgtaaatctttttcaagatattgctgaaaatgcaaaggaaatcctgcaacaaaatgcagaagatc |
1976990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 15 - 192
Target Start/End: Complemental strand, 1984533 - 1984356
Alignment:
| Q |
15 |
aaagtcaggaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaaggaagagtctgatgatgaaatggctgattccccaccaaaggatg |
114 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1984533 |
aaagtcagaaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaaggaagagtctgatgatgaaatggctgattccccaccaaaggatg |
1984434 |
T |
|
| Q |
115 |
gtgaaccctctgatgtaaatcttttccaagatattgctgaaaatgcaaaggaaatccttcagcaaaatgcagaagatc |
192 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
1984433 |
gtgaaccctctgatgtaaatctttttcaagatattgctgaaaatgcaaaggaaatcctgcaacaaaatgcagaagatc |
1984356 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 313 - 367
Target Start/End: Complemental strand, 1976869 - 1976815
Alignment:
| Q |
313 |
ttgctgcaatctctgaagaggaacttcagaatgttgactcaactgatgttgctga |
367 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
1976869 |
ttgctgcaatttctgaagaggaacttcagaatgttgactcaactgctgctgctga |
1976815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 313 - 359
Target Start/End: Complemental strand, 1984235 - 1984189
Alignment:
| Q |
313 |
ttgctgcaatctctgaagaggaacttcagaatgttgactcaactgat |
359 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
1984235 |
ttgctgcaatttctgaagaggaacttcagaatgttgactcaactgat |
1984189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0764 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: scaffold0764
Description:
Target: scaffold0764; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 15 - 189
Target Start/End: Complemental strand, 3282 - 3108
Alignment:
| Q |
15 |
aaagtcaggaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaaggaagagtctgatgatgaaatggctgattccccaccaaaggatg |
114 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| ||||||||||||||||| || || | |||||||| || || |||||||||||||||||||| | |
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|
| T |
3282 |
aaagtcagaaatctttcaagcattcagagacaagaagaagaaaactctcctgacaaagaggcatctgatgaagagatagctgattccccaccaaaggagg |
3183 |
T |
|
| Q |
115 |
gtgaaccctctgatgtaaatcttttccaagatattgctgaaaatgcaaaggaaatccttcagcaaaatgcagaag |
189 |
Q |
| |
|
||||||| ||| ||| ||||| |||||||||||||||||| |||||| ||||||||||| || ||||||||| |
|
|
| T |
3182 |
atgaacccactgctgttaatctcttccaagatattgctgaacgtgcaaaagaaatccttcaagaagatgcagaag |
3108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0764; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 320 - 370
Target Start/End: Complemental strand, 2986 - 2936
Alignment:
| Q |
320 |
aatctctgaagaggaacttcagaatgttgactcaactgatgttgctgatgt |
370 |
Q |
| |
|
|||||||||| |||| |||||||| ||||||||||||| |||||||||||| |
|
|
| T |
2986 |
aatctctgaaaaggaccttcagaaagttgactcaactggtgttgctgatgt |
2936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0313 (Bit Score: 83; Significance: 3e-39; HSPs: 4)
Name: scaffold0313
Description:
Target: scaffold0313; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 15 - 189
Target Start/End: Original strand, 3333 - 3507
Alignment:
| Q |
15 |
aaagtcaggaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaaggaagagtctgatgatgaaatggctgattccccaccaaaggatg |
114 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| ||||||||||||||||| || || | |||||||| || || |||||||||||||||||||| | |
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|
| T |
3333 |
aaagtcagaaatctttcaagcattcagagacaagaagaagaaaactctcctgacaaagaggcatctgatgaagagatagctgattccccaccaaaggagg |
3432 |
T |
|
| Q |
115 |
gtgaaccctctgatgtaaatcttttccaagatattgctgaaaatgcaaaggaaatccttcagcaaaatgcagaag |
189 |
Q |
| |
|
||||||| ||| ||| ||||| |||||||||||||||||| |||||| ||||||||||| || ||||||||| |
|
|
| T |
3433 |
atgaacccactgctgttaatctcttccaagatattgctgaacgtgcaaaagaaatccttcaagaagatgcagaag |
3507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0313; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 15 - 189
Target Start/End: Original strand, 17490 - 17664
Alignment:
| Q |
15 |
aaagtcaggaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaaggaagagtctgatgatgaaatggctgattccccaccaaaggatg |
114 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| ||||||||||||||||| || || | |||||||| || || |||||||||||||||||||| | |
|
|
| T |
17490 |
aaagtcagaaatctttcaagcattcagagacaagaagaagaaaactctcctgacaaagaggcatctgatgaagagatagctgattccccaccaaaggagg |
17589 |
T |
|
| Q |
115 |
gtgaaccctctgatgtaaatcttttccaagatattgctgaaaatgcaaaggaaatccttcagcaaaatgcagaag |
189 |
Q |
| |
|
||||||| ||| ||| ||||| |||||||||||||||||| |||||| ||||||||||| || ||||||||| |
|
|
| T |
17590 |
atgaacccactgctgttaatctcttccaagatattgctgaacgtgcaaaagaaatccttcaagaagatgcagaag |
17664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0313; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 320 - 370
Target Start/End: Original strand, 3629 - 3679
Alignment:
| Q |
320 |
aatctctgaagaggaacttcagaatgttgactcaactgatgttgctgatgt |
370 |
Q |
| |
|
|||||||||| |||| |||||||| ||||||||||||| |||||||||||| |
|
|
| T |
3629 |
aatctctgaaaaggaccttcagaaagttgactcaactggtgttgctgatgt |
3679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0313; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 320 - 370
Target Start/End: Original strand, 17786 - 17836
Alignment:
| Q |
320 |
aatctctgaagaggaacttcagaatgttgactcaactgatgttgctgatgt |
370 |
Q |
| |
|
|||||||||| |||| |||||||| ||||||||||||| |||||||||||| |
|
|
| T |
17786 |
aatctctgaaaaggaccttcagaaagttgactcaactggtgttgctgatgt |
17836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1531 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold1531
Description:
Target: scaffold1531; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 57 - 189
Target Start/End: Original strand, 1140 - 1272
Alignment:
| Q |
57 |
aactctcctgaaaaggaagagtctgatgatgaaatggctgattccccaccaaaggatggtgaaccctctgatgtaaatcttttccaagatattgctgaaa |
156 |
Q |
| |
|
|||||||| |||| |||| ||| ||||||| |||||||| || |||| |||||||||||||||| ||| ||| ||||| ||||||| ||||||||| |
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|
| T |
1140 |
aactctccctaaaaagaagcatctaatgatgagatggctgactctccactaaaggatggtgaacccactgctgttaatctcttccaaggaattgctgaac |
1239 |
T |
|
| Q |
157 |
atgcaaaggaaatccttcagcaaaatgcagaag |
189 |
Q |
| |
|
||||| ||||||||||| ||||||||||||| |
|
|
| T |
1240 |
gtgcaagagaaatccttcaacaaaatgcagaag |
1272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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