View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7644_high_1 (Length: 868)

Name: NF7644_high_1
Description: NF7644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7644_high_1
NF7644_high_1
[»] chr2 (19 HSPs)
chr2 (31-868)||(12075096-12075945)
chr2 (60-316)||(12074256-12074510)
chr2 (60-316)||(12053789-12054043)
chr2 (566-726)||(12055572-12055730)
chr2 (566-726)||(12044064-12044224)
chr2 (756-864)||(12076427-12076535)
chr2 (60-193)||(12062654-12062788)
chr2 (758-864)||(12054565-12054663)
chr2 (248-311)||(12058610-12058675)
chr2 (341-462)||(6761718-6761839)
chr2 (168-307)||(12066702-12066839)
chr2 (219-317)||(12046974-12047073)
chr2 (208-311)||(12064055-12064159)
chr2 (515-572)||(12058505-12058566)
chr2 (248-316)||(5584908-5584978)
chr2 (341-408)||(13811033-13811099)
chr2 (317-408)||(2826002-2826095)
chr2 (248-303)||(5570071-5570128)
chr2 (451-484)||(6581651-6581684)
[»] chr4 (5 HSPs)
chr4 (340-462)||(7627951-7628073)
chr4 (339-404)||(53919859-53919924)
chr4 (359-404)||(31871105-31871150)
chr4 (338-407)||(35180652-35180721)
chr4 (339-408)||(42370360-42370428)
[»] chr3 (5 HSPs)
chr3 (317-402)||(30464009-30464094)
chr3 (339-462)||(1511325-1511449)
chr3 (318-419)||(49003102-49003201)
chr3 (342-403)||(54912049-54912110)
chr3 (343-408)||(25548244-25548310)
[»] chr5 (6 HSPs)
chr5 (339-408)||(27016662-27016731)
chr5 (317-403)||(34032141-34032229)
chr5 (343-410)||(8761922-8761989)
chr5 (339-462)||(31672402-31672526)
chr5 (344-402)||(35395184-35395242)
chr5 (339-408)||(32017464-32017533)
[»] chr6 (1 HSPs)
chr6 (320-408)||(31702786-31702874)
[»] chr1 (10 HSPs)
chr1 (317-408)||(4521054-4521145)
chr1 (340-408)||(36321671-36321739)
chr1 (339-403)||(45584530-45584594)
chr1 (338-408)||(4039648-4039718)
chr1 (359-408)||(5787488-5787537)
chr1 (342-408)||(5115652-5115718)
chr1 (360-402)||(5597728-5597770)
chr1 (342-408)||(34445663-34445729)
chr1 (346-428)||(38570380-38570462)
chr1 (344-408)||(50875699-50875764)
[»] chr8 (3 HSPs)
chr8 (318-404)||(7691327-7691415)
chr8 (337-402)||(45368775-45368840)
chr8 (343-462)||(42760139-42760258)
[»] chr7 (2 HSPs)
chr7 (342-408)||(8920749-8920815)
chr7 (339-408)||(17157815-17157885)


Alignment Details
Target: chr2 (Bit Score: 666; Significance: 0; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 666; E-Value: 0
Query Start/End: Original strand, 31 - 868
Target Start/End: Complemental strand, 12075945 - 12075096
Alignment:
Q  31 gggatcaaagttgtgatgtctnnnnnnnnttgaactttttaaactgtcaatgctactactcaagcaccaacacctccggaactacattatcgatcaaatg 130  Q
    |||||||||||||||| ||||        |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||    
T  12075945 gggatcaaagttgtgacgtctaaaaaaaattgaactttttaaactgtcaatgctactgctcaagcaccaacacctccggaactacattaccaatcaaatg 12075846  T
Q  131 ataagtcatagaagttggtaatttcagcggtgtggcacttgaacagtgtcattgggaaaggaataaccaatagacatctctgtcaaattgcaattgttag 230  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  12075845 ataagtcagagaagttggtaatttcagcggtgtggcacttgaacagtgtcattgggacaggaataaccaatagacatctctgtcaaattgcaattgttag 12075746  T
Q  231 tcattcatttgttatctttatatagaacaacttcacatattatgtttctttgctagcaatatgggactaaaaaccatatttttactagggtcttgtaaac 330  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||    
T  12075745 tcattcatttgttatctttatatagaacaacttcacgtattatgtttctttgctagcaatatgggactaaaaaccctatttttactagggtcttgttaac 12075646  T
Q  331 gagtgtcgggggcactctttaagcacaccaaaagaagaaactattctatacaaaagttaaatatttcaatttccaatgtactagttacataagttttcnn 430  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||  |||||||||| |||||||||||||||||||||| |||||||||||||||||      
T  12075645 gagtgccgggggcactctttaagcataccaaaagaagaaactatttcatacaaaagtcaaatatttcaatttccaatgtattagttacataagttttcaa 12075546  T
Q  431 nnnnngttaacttttaaaggtcttaaa-gagtgtc-------actcgttaacattttccttttttgtatttactttcacctcacttgcacaaatatcagt 522  Q
         |||||||||||||||||||||| ||||||        ||||||||||||||  ||||||| ||||||||||||||||||||||||| ||||||||    
T  12075545 aaaaagttaacttttaaaggtcttaaaagagtgttttggggaactcgttaacatttcgcttttttctatttactttcacctcacttgcacacatatcagt 12075446  T
Q  523 actacttacttgcaatggtctatgatcg----taccgtggcctctagtatttcacttccttcataaggaagctaacgaagtatatacttattctgttttt 618  Q
    ||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  12075445 actacttacttgcaatggtctatgatcgattgtaccgtggcctctagtatttcacttccttcgtaaggaagctaacgaagtatatacttattctgttttt 12075346  T
Q  619 aggttcaagcaacaatgacatccattcatttaaaattgttcctaaccatattcatattcaagtatctaagtttccttctaaataagggtttgagtttttc 718  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12075345 aggttcaagcaacaatgacatccattcatttaaaattgttcctaaccatattcatattcaagtatctaagtttccttctaaataagggtttgagtttttc 12075246  T
Q  719 tttcttttaggattcattactgcccagaaccaaaagatcccaagaaacctcaatgacgcgtctcatagggtgaaattgtgagtcgacattagttttggag 818  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12075245 tttctttaaggattcattactgcccagaaccaaaagatcccaagaaacctcaatgacgcgtctcatagggtgaaattgtgagtcgacattagttttggag 12075146  T
Q  819 gaagaaacggtgaacttagcttaatttgtgaccacacgaaaaagcttatt 868  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12075145 gaagaaacggtgaacttagcttaatttgtgaccacacgaaaaagcttatt 12075096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 60 - 316
Target Start/End: Complemental strand, 12074510 - 12074256
Alignment:
Q  60 ttgaactttttaaactgtcaatgctactactcaagcaccaacacctccggaactacattatcgatcaaatgataagtcatagaagttggtaatttcagcg 159  Q
    |||||||||||||||||| |||||||||||||||| | |  |||| | |||||| || || | |||||||||||||||  ||||||| ||| |||||| |    
T  12074510 ttgaactttttaaactgtgaatgctactactcaagaaact-caccactggaactccactaccaatcaaatgataagtcggagaagttagtagtttcagtg 12074412  T
Q  160 gtgtggcacttgaacagtgtcattgggaaaggaataaccaatagacatctctgtcaaattgcaattgttagtcattcatttgttatctttatatagaaca 259  Q
    ||||||| |||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||| ||||| ||   ||| ||||||||||||    
T  12074411 gtgtggcccttgaacagtgtcattaggacaggaataaccaaaagacatctctgtcaaattgcaattgttagtaattcacttaccatc-ttatatagaaca 12074313  T
Q  260 acttcacatattatgtttctttgctagcaatatgggactaaaaaccatatttttact 316  Q
    ||||||| | |||||||||||| |||||||||||||||||||| |||||||||||||    
T  12074312 acttcacgtgttatgtttctttcctagcaatatgggactaaaagccatatttttact 12074256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 60 - 316
Target Start/End: Complemental strand, 12054043 - 12053789
Alignment:
Q  60 ttgaactttttaaactgtcaatgctactactcaagcaccaacacctccggaactacattatcgatcaaatgataagtcatagaagttggtaatttcagcg 159  Q
    ||||||||||||| ||||||||||||||| || ||    | |||| || |||||||| || |||||||| || ||||   | ||||||| | |||| | |    
T  12054043 ttgaactttttaacctgtcaatgctactattccagat--agcacccccagaactacactaccgatcaaacgacaagttggaaaagttggcagtttcgggg 12053946  T
Q  160 gtgtggcacttgaacagtgtcattgggaaaggaataaccaatagacatctctgtcaaattgcaattgttagtcattcatttgttatctttatatagaaca 259  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||| | ||||||||| |||||||||||||| |||| |||||||||||||| |    
T  12053945 gtgtggcactagaacagtgtcattgggacaggaataaccaatagacatctcagccaaattgcatttgttagtcattcacttgtcatctttatatagaaaa 12053846  T
Q  260 acttcacatattatgtttctttgctagcaatatgggactaaaaaccatatttttact 316  Q
    ||||||| |||||||||||||||| |||||||||||||||||| |||||||| ||||    
T  12053845 acttcacgtattatgtttctttgcaagcaatatgggactaaaagccatatttatact 12053789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 566 - 726
Target Start/End: Complemental strand, 12055730 - 12055572
Alignment:
Q  566 tatttcacttccttcataaggaagctaacgaagtatatacttattctgtttttaggttcaagcaacaatgacatccattcatttaaaattgttcctaacc 665  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||| |||||||||||| | |||||||||     
T  12055730 tattacacttccttcataaggaagctaacga-gtatatacttattctgtttttagattcaagcaacaacgacattcattcatttaaa-tagttcctaact 12055633  T
Q  666 atattcatattcaagtatctaagtttccttctaaataagggtttgagtttttctttctttt 726  Q
    |||||||||||||||||||||||||||||| | ||| |||||||  |||||||||||||||    
T  12055632 atattcatattcaagtatctaagtttccttttgaatcagggtttcggtttttctttctttt 12055572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 566 - 726
Target Start/End: Complemental strand, 12044224 - 12044064
Alignment:
Q  566 tatttcacttccttcataaggaagctaacgaagtatatacttattctgtttttaggttcaagcaacaatgacatccattcatttaaaattgttcctaacc 665  Q
    |||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||  |||| | |     
T  12044224 tattgcacttccttcatatggaagctaacaaagtatatacttattctgtttttaggttcaagcaacagtgacatctattcattt-aaataattcccagca 12044126  T
Q  666 atattcatattcaagtatc-taagtttccttctaaataagggtttgagtttttctttctttt 726  Q
    ||||||||||||||||||| ||||||||||||| ||| ||| |||| |||||||||||||||    
T  12044125 atattcatattcaagtatcttaagtttccttctgaatcaggatttgggtttttctttctttt 12044064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 756 - 864
Target Start/End: Complemental strand, 12076535 - 12076427
Alignment:
Q  756 tcccaagaaacctcaatgacgcgtctcatagggtgaaattgtgagtcgacattagttttggaggaagaaacggtgaacttagcttaatttgtgaccacac 855  Q
    |||||||||||||| |||| |||||||||||||||||| | |||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||    
T  12076535 tcccaagaaacctcgatgatgcgtctcatagggtgaaactttgagtcgacattagttttggaggaaagaacggtgaacttagcttaatttgtggccacac 12076436  T
Q  856 gaaaaagct 864  Q
    ||| |||||    
T  12076435 gaagaagct 12076427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 60 - 193
Target Start/End: Complemental strand, 12062788 - 12062654
Alignment:
Q  60 ttgaactttttaaactgtcaatgctactactcaagcaccaacacctccggaa-ctacattatcgatcaaatgataagtcatagaagttggtaatttcagc 158  Q
    |||||| |||||||||||||||||||||| |||  ||||| |||| |  ||| |||||  |  ||||||||||||||  | ||||||||||| |||||||    
T  12062788 ttgaacattttaaactgtcaatgctactattcagacaccatcaccacttgaaactacacaacggatcaaatgataaggtagagaagttggtagtttcagc 12062689  T
Q  159 ggtgtggcacttgaacagtgtcattgggaaaggaa 193  Q
    ||||||||||||||||||||||||||||| |||||    
T  12062688 ggtgtggcacttgaacagtgtcattgggacaggaa 12062654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 758 - 864
Target Start/End: Complemental strand, 12054663 - 12054565
Alignment:
Q  758 ccaagaaacctcaatgacgcgtctcatagggtgaaattgtgagtcgacattagttttggaggaagaaacggtgaacttagcttaatttgtgaccacacga 857  Q
    ||||||||||||||||| | ||| |||||||||||| |||||||       ||||||||| ||| |||||||||||||||||| ||||||||||||||||    
T  12054663 ccaagaaacctcaatgatgtgtcacatagggtgaaactgtgagt-------agttttggaagaa-aaacggtgaacttagcttgatttgtgaccacacga 12054572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 248 - 311
Target Start/End: Complemental strand, 12058675 - 12058610
Alignment:
Q  248 ttatatagaacaacttcacatat--tatgtttctttgctagcaatatgggactaaaaaccatattt 311  Q
    ||||||| ||||||||||||| |  |||||||||||||||||||||||||||||||| ||||||||    
T  12058675 ttatatataacaacttcacatgtgttatgtttctttgctagcaatatgggactaaaagccatattt 12058610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 341 - 462
Target Start/End: Complemental strand, 6761839 - 6761718
Alignment:
Q  341 ggcactctttaagcacaccaaaagaagaaactattctatacaaaagttaaatatttcaatttccaatgtactagttacataagttttcnnnnnnngttaa 440  Q
    |||||||||||||||  ||||||||| |||  |||||||| |||||| |||||||||||||||||||| | |  |||||||| |||||       | ||     
T  6761839 ggcactctttaagcattccaaaagaataaatcattctataaaaaagtcaaatatttcaatttccaatgcattgattacataaattttcaaaaaaagatac 6761740  T
Q  441 cttttaaaggtcttaaagagtg 462  Q
     |||||||||||||||||||||    
T  6761739 attttaaaggtcttaaagagtg 6761718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 168 - 307
Target Start/End: Complemental strand, 12066839 - 12066702
Alignment:
Q  168 cttgaacagtgtcattgggaaaggaataaccaatagacatctctgtcaaattgcaattgttagtcattcatttgttatctttatatagaacaacttcaca 267  Q
    ||||||||||||||||| || ||  ||| ||||||||| |||||||  |||||||| |||| || | |||| |  |||||| ||||||||||||||||||    
T  12066839 cttgaacagtgtcattgagacagtgatagccaatagacttctctgtgcaattgcaaatgtttgt-agtcatct--tatctt-atatagaacaacttcaca 12066744  T
Q  268 tat--tatgtttctttgctagcaatatgggactaaaaaccat 307  Q
    | |  |||||||||||| ||||||| ||||||||||| ||||    
T  12066743 tgtgttatgtttctttggtagcaatgtgggactaaaagccat 12066702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 219 - 317
Target Start/End: Complemental strand, 12047073 - 12046974
Alignment:
Q  219 tgcaattgttagtcattcatttgttatctttatatagaacaacttcacatat--tatgtttctttgctagcaatatgggactaaaaaccatatttttact 316  Q
    ||||||||||||| ||||| |||  ||||| ||||| ||||||||||||| |  ||| |||||||||||||||| ||||||||||| |||| ||| ||||    
T  12047073 tgcaattgttagtaattcacttgcaatctt-atatataacaacttcacatgtgttatttttctttgctagcaatgtgggactaaaagccatttttatact 12046975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 208 - 311
Target Start/End: Complemental strand, 12064159 - 12064055
Alignment:
Q  208 ctctgtcaaattgcaattgttagtcattcatttgttatctttatatagaacaacttcacatat--tatgtttctttgctagcaatatgggactaaaaacc 305  Q
    |||||| ||| ||||||||||||| ||||| |||  |||||  |||| ||||||||||||| |  ||||||||||| |||||||| |||||||||||  |    
T  12064159 ctctgtgaaactgcaattgttagtaattcacttgcaatcttg-tatataacaacttcacatgtgttatgtttctttcctagcaatgtgggactaaaagtc 12064061  T
Q  306 atattt 311  Q
    ||||||    
T  12064060 atattt 12064055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 515 - 572
Target Start/End: Complemental strand, 12058566 - 12058505
Alignment:
Q  515 atatcagtactacttacttgcaatggtctatgatc----gtaccgtggcctctagtatttca 572  Q
    |||||||| |||||||||||||||| |||||||||    |||| ||||||||||||||||||    
T  12058566 atatcagtgctacttacttgcaatgctctatgatcgattgtactgtggcctctagtatttca 12058505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 248 - 316
Target Start/End: Original strand, 5584908 - 5584978
Alignment:
Q  248 ttatatagaacaacttcacatattatgtttctttgctagcaatatgggactaaaa--accatatttttact 316  Q
    ||||||||||||| |||| || |||||||||||||||||| || | |||||| ||  ||||||||||||||    
T  5584908 ttatatagaacaagttcatatgttatgtttctttgctagcgatgttggactagaatgaccatatttttact 5584978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 341 - 408
Target Start/End: Original strand, 13811033 - 13811099
Alignment:
Q  341 ggcactctttaagcacaccaaaagaagaaactattctatacaaaagttaaatatttcaatttccaatg 408  Q
    ||||||||||||||| ||||||| ||| || |||||| || |||||| |||||||| |||||||||||    
T  13811033 ggcactctttaagca-accaaaacaagcaattattctttaaaaaagtaaaatattttaatttccaatg 13811099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 317 - 408
Target Start/End: Complemental strand, 2826095 - 2826002
Alignment:
Q  317 agggtcttgtaaacgagtgtcg--ggggcactctttaagcacaccaaaagaagaaactattctatacaaaagttaaatatttcaatttccaatg 408  Q
    |||||||||| ||||||||||   | || |||||||||||| || |||| |||||| |||| | || |||||| ||||||||| ||||||||||    
T  2826095 agggtcttgttaacgagtgtccctgtggtactctttaagcatactaaaataagaaattattttttaaaaaagtaaaatatttcgatttccaatg 2826002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 248 - 303
Target Start/End: Original strand, 5570071 - 5570128
Alignment:
Q  248 ttatatagaacaacttcacatat--tatgtttctttgctagcaatatgggactaaaaa 303  Q
    ||||||||||||||||| | |||  |||||||||||||| ||||| ||||||||||||    
T  5570071 ttatatagaacaacttcccgtatgttatgtttctttgctggcaatgtgggactaaaaa 5570128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 451 - 484
Target Start/End: Original strand, 6581651 - 6581684
Alignment:
Q  451 tcttaaagagtgtcactcgttaacattttccttt 484  Q
    |||||||||||| |||||||||||||||||||||    
T  6581651 tcttaaagagtgacactcgttaacattttccttt 6581684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 9e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 340 - 462
Target Start/End: Original strand, 7627951 - 7628073
Alignment:
Q  340 gggcactctttaagcacaccaaaagaagaaactattctatacaaaagttaaatatttcaatttccaatgtactagttacataagttttcnnnnnnngtta 439  Q
    ||||||||||||||||  ||||||| ||||| ||||| ||| |||||| |||| ||||||||||||||  | | ||||||||| |||||       ||||    
T  7627951 gggcactctttaagcattccaaaaggagaaattattccatagaaaagtcaaatgtttcaatttccaatacattggttacataacttttcaaaaaaagtta 7628050  T
Q  440 acttttaaaggtcttaaagagtg 462  Q
     ||||||||||||||||||||||    
T  7628051 ccttttaaaggtcttaaagagtg 7628073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 339 - 404
Target Start/End: Original strand, 53919859 - 53919924
Alignment:
Q  339 ggggcactctttaagcacaccaaaagaagaaactattctatacaaaagttaaatatttcaatttcc 404  Q
    |||||||||||||||||   |||||||| ||| ||||||||| |||||| ||| ||||||||||||    
T  53919859 ggggcactctttaagcatttcaaaagaataaattattctataaaaaagtcaaaaatttcaatttcc 53919924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 359 - 404
Target Start/End: Complemental strand, 31871150 - 31871105
Alignment:
Q  359 caaaagaagaaactattctatacaaaagttaaatatttcaatttcc 404  Q
    |||||||||||| |||| |||| |||||| ||||||||||||||||    
T  31871150 caaaagaagaaattattttataaaaaagtaaaatatttcaatttcc 31871105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 338 - 407
Target Start/End: Complemental strand, 35180721 - 35180652
Alignment:
Q  338 gggggcactctttaagcacaccaaaagaagaaactattctatacaaaagttaaatatttcaatttccaat 407  Q
    ||||||||||||||||||  || |||| ||||| ||||| ||| |||||| |||| ||||||||| ||||    
T  35180721 gggggcactctttaagcattcctaaaggagaaattattccatagaaaagtcaaatgtttcaattttcaat 35180652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 339 - 408
Target Start/End: Complemental strand, 42370428 - 42370360
Alignment:
Q  339 ggggcactctttaagcacaccaaaagaagaaactattctatacaaaagttaaatatttcaatttccaatg 408  Q
    ||||||||||||||||| ||||||| ||| || |||||| || |||||| |||||||| ||||| |||||    
T  42370428 ggggcactctttaagcataccaaaacaagcaattattcttta-aaaagtaaaatattttaattttcaatg 42370360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 9e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 317 - 402
Target Start/End: Complemental strand, 30464094 - 30464009
Alignment:
Q  317 agggtcttgtaaacgagtgtcgggggcactctttaagcacaccaaaagaagaaactattctatacaaaagttaaatatttcaattt 402  Q
    |||||||||| |||||||||  ||||||||| |||||||  ||||||||||||| ||||||||| |||||| ||| ||||||||||    
T  30464094 agggtcttgttaacgagtgttcggggcactcgttaagcattccaaaagaagaaattattctataaaaaagtcaaacatttcaattt 30464009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 339 - 462
Target Start/End: Original strand, 1511325 - 1511449
Alignment:
Q  339 ggggcactctttaagcacaccaaaagaagaaactattctat-acaaaagttaaatatttcaatttccaatgtactagttacataagttttcnnnnnnngt 437  Q
    |||||||||||||||||  ||||||||||||| ||||| || | ||| || ||| |||||||||||||||| | |  |||||| | |||||       ||    
T  1511325 ggggcactctttaagcatgccaaaagaagaaattattccatcaaaaatgtcaaagatttcaatttccaatgcattgattacattaattttcaaaaaaagt 1511424  T
Q  438 taacttttaaaggtcttaaagagtg 462  Q
    || ||||||||||||||||||||||    
T  1511425 taccttttaaaggtcttaaagagtg 1511449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 318 - 419
Target Start/End: Complemental strand, 49003201 - 49003102
Alignment:
Q  318 gggtcttgtaaacgagtgtcgggggcactctttaagcacaccaaaagaagaaactattctatacaaaagttaaatatttcaatttccaatgtactagtta 417  Q
    ||||||||| |||||||||| |||||||||||||||||    | ||||  ||| ||||| ||| |||||| ||| |||||||||||||||||| || |||    
T  49003201 gggtcttgttaacgagtgtccggggcactctttaagcattttataaga--aaattattccataaaaaagtcaaagatttcaatttccaatgtattaatta 49003104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 342 - 403
Target Start/End: Complemental strand, 54912110 - 54912049
Alignment:
Q  342 gcactctttaagcacaccaaaagaagaaactattctatacaaaagttaaatatttcaatttc 403  Q
    |||||||||||| |  ||||||||| |||||||| ||||  |||||||||||||||||||||    
T  54912110 gcactctttaagaattccaaaagaataaactattttataacaaagttaaatatttcaatttc 54912049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 343 - 408
Target Start/End: Complemental strand, 25548310 - 25548244
Alignment:
Q  343 cactctttaagcacaccaaaagaagaaactattctatacaaaa-gttaaatatttcaatttccaatg 408  Q
    ||||||||||| || | ||||||||||| |||| |||| |||| |||||||||||||||||| ||||    
T  25548310 cactctttaaggactctaaaagaagaaaatattttataaaaaaagttaaatatttcaatttctaatg 25548244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 339 - 408
Target Start/End: Original strand, 27016662 - 27016731
Alignment:
Q  339 ggggcactctttaagcacaccaaaagaagaaactattctatacaaaagttaaatatttcaatttccaatg 408  Q
    |||||||||||||||||  ||||||||||||| ||||| ||| |||||| ||| ||||||||||||||||    
T  27016662 ggggcactctttaagcattccaaaagaagaaattattccataaaaaagtcaaaaatttcaatttccaatg 27016731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 317 - 403
Target Start/End: Complemental strand, 34032229 - 34032141
Alignment:
Q  317 agggtcttgtaaacgagtgtcg--ggggcactctttaagcacaccaaaagaagaaactattctatacaaaagttaaatatttcaatttc 403  Q
    |||||||||| ||||||||||   |||||||||||||||||  | |||| ||| || |||||| || ||||||||||||||||||||||    
T  34032229 agggtcttgttaacgagtgtccttggggcactctttaagcattctaaaataagtaattattctttaaaaaagttaaatatttcaatttc 34032141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 343 - 410
Target Start/End: Original strand, 8761922 - 8761989
Alignment:
Q  343 cactctttaagcacaccaaaagaagaaactattctatacaaaagttaaatatttcaatttccaatgta 410  Q
    ||||||||||| |  | |||| |||||| ||||||||| ||||||||||||||||||||| |||||||    
T  8761922 cactctttaaggattctaaaaaaagaaattattctataaaaaagttaaatatttcaattttcaatgta 8761989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 339 - 462
Target Start/End: Original strand, 31672402 - 31672526
Alignment:
Q  339 ggggcactctttaagcacaccaaaagaagaaactattctat-acaaaagttaaatatttcaatttccaatgtactagttacataagttttcnnnnnnngt 437  Q
    |||||||||||||||||  ||||||| ||||||||||| || | |||||| |||| ||||||||||||||| | |  ||||| ||  ||||       ||    
T  31672402 ggggcactctttaagcattccaaaaggagaaactattccataaaaaaagtcaaatgtttcaatttccaatgcattgattacaaaaaatttcaaaaaaagt 31672501  T
Q  438 taacttttaaaggtcttaaagagtg 462  Q
    || ||||||||||||||||||||||    
T  31672502 taccttttaaaggtcttaaagagtg 31672526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 344 - 402
Target Start/End: Original strand, 35395184 - 35395242
Alignment:
Q  344 actctttaagcacaccaaaagaagaaactattctatacaaaagttaaatatttcaattt 402  Q
    |||||||||| |  |||||||||||||||||| |||| |||||| |||||||| |||||    
T  35395184 actctttaaggattccaaaagaagaaactattttataaaaaagtcaaatattttaattt 35395242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 339 - 408
Target Start/End: Complemental strand, 32017533 - 32017464
Alignment:
Q  339 ggggcactctttaagcacaccaaaagaagaaactattctatacaaaagttaaatatttcaatttccaatg 408  Q
    |||||||||||||| || | ||||| ||| || |||||| || |||||| |||||||||||||| |||||    
T  32017533 ggggcactctttaaacatatcaaaacaagcaattattctttaaaaaagtaaaatatttcaattttcaatg 32017464  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 320 - 408
Target Start/End: Complemental strand, 31702874 - 31702786
Alignment:
Q  320 gtcttgtaaacgagtgtcgggggcactctttaagcacaccaaaagaagaaactattctatacaaaagttaaatatttcaatttccaatg 408  Q
    ||||||| |||||||||| ||||||||||||||| |   |||||||||||| |||| |||| ||||||||| ||||| |||||| ||||    
T  31702874 gtcttgttaacgagtgtccggggcactctttaagaatttcaaaagaagaaattattttataaaaaagttaagtattttaatttctaatg 31702786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 317 - 408
Target Start/End: Complemental strand, 4521145 - 4521054
Alignment:
Q  317 agggtcttgtaaacgagtgtcgggggcactctttaagcacaccaaaagaagaaactattctatacaaaagttaaatatttcaatttccaatg 408  Q
    |||||||||| |||||||| |  |||||||||||||||| || |||| |||  | |||||| || |||||||||| ||||||||||||||||    
T  4521145 agggtcttgttaacgagtgcctcgggcactctttaagcatactaaaacaagcgattattctttaaaaaagttaaacatttcaatttccaatg 4521054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 340 - 408
Target Start/End: Complemental strand, 36321739 - 36321671
Alignment:
Q  340 gggcactctttaagcacaccaaaagaagaaactattctatacaaaagttaaatatttcaatttccaatg 408  Q
    |||||||||||||||| ||||||| ||| || |||||| || |||||||||| ||||| ||||||||||    
T  36321739 gggcactctttaagcataccaaaacaagtaattattctttagaaaagttaaacatttcgatttccaatg 36321671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 339 - 403
Target Start/End: Original strand, 45584530 - 45584594
Alignment:
Q  339 ggggcactctttaagcacaccaaaagaagaaactattctatacaaaagttaaatatttcaatttc 403  Q
    ||||||||||||||| |  ||||||||||||| |||| |||| ||||||||||||||| ||||||    
T  45584530 ggggcactctttaaggattccaaaagaagaaattattttataaaaaagttaaatattttaatttc 45584594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 338 - 408
Target Start/End: Complemental strand, 4039718 - 4039648
Alignment:
Q  338 gggggcactctttaagcacaccaaaagaagaaactattctatacaaaagttaaatatttcaatttccaatg 408  Q
    |||||||||||||||| |  ||||||||| ||| |||| |||| |||||| ||||||||| ||||||||||    
T  4039718 gggggcactctttaaggattccaaaagaataaattattttataaaaaagtcaaatatttcgatttccaatg 4039648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 359 - 408
Target Start/End: Complemental strand, 5787537 - 5787488
Alignment:
Q  359 caaaagaagaaactattctatacaaaagttaaatatttcaatttccaatg 408  Q
    |||||||||||| |||| |||| || ||||||||||||||||||||||||    
T  5787537 caaaagaagaaaatattttataaaatagttaaatatttcaatttccaatg 5787488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 342 - 408
Target Start/End: Complemental strand, 5115718 - 5115652
Alignment:
Q  342 gcactctttaagcacaccaaaagaagaaactattctatacaaaagttaaatatttcaatttccaatg 408  Q
    |||||||||||| |  | ||||||| ||| |||  |||| |||||||||||||||||||||||||||    
T  5115718 gcactctttaaggattctaaaagaataaattatgttataaaaaagttaaatatttcaatttccaatg 5115652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 360 - 402
Target Start/End: Original strand, 5597728 - 5597770
Alignment:
Q  360 aaaagaagaaactattctatacaaaagttaaatatttcaattt 402  Q
    ||||||||||| ||||||||| ||||||||||||||| |||||    
T  5597728 aaaagaagaaattattctataaaaaagttaaatattttaattt 5597770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 342 - 408
Target Start/End: Original strand, 34445663 - 34445729
Alignment:
Q  342 gcactctttaagcacaccaaaagaagaaactattctatacaaaagttaaatatttcaatttccaatg 408  Q
    |||||||||||| |  ||||||||||||| || | |||| |||||| ||||||||| ||||||||||    
T  34445663 gcactctttaaggattccaaaagaagaaattaatttataaaaaagtcaaatatttcgatttccaatg 34445729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 346 - 428
Target Start/End: Complemental strand, 38570462 - 38570380
Alignment:
Q  346 tctttaagcacaccaaaagaagaaactattctatacaaaagttaaatatttcaatttccaatgtactagttacataagttttc 428  Q
    ||||||||||  |||||||||||||  |||  ||  |||||| |||||||||||||| ||||| | || ||||||||||||||    
T  38570462 tctttaagcatcccaaaagaagaaatgatttcatcaaaaagtcaaatatttcaattttcaatgcattaattacataagttttc 38570380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 344 - 408
Target Start/End: Original strand, 50875699 - 50875764
Alignment:
Q  344 actctttaagcacaccaaaagaagaaactattctatac-aaaagttaaatatttcaatttccaatg 408  Q
    ||||||||||||  | ||||| ||||| |||||||||  |||||| ||||||||||||||||||||    
T  50875699 actctttaagcattctaaaaggagaaattattctataggaaaagtcaaatatttcaatttccaatg 50875764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 318 - 404
Target Start/End: Original strand, 7691327 - 7691415
Alignment:
Q  318 gggtcttgtaaacgagtgtc--gggggcactctttaagcacaccaaaagaagaaactattctatacaaaagttaaatatttcaatttcc 404  Q
    |||| |||| ||||||||||  ||| ||||||||||||||    ||||||||||| ||||| |||||||| ||||||||||||||||||    
T  7691327 gggttttgttaacgagtgtctcgggagcactctttaagcattttaaaagaagaaattattccatacaaaaattaaatatttcaatttcc 7691415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 337 - 402
Target Start/End: Complemental strand, 45368840 - 45368775
Alignment:
Q  337 cgggggcactctttaagcacaccaaaagaagaaactattctatacaaaagttaaatatttcaattt 402  Q
    ||||||||||||||||| |  |||||| |||||| |||| |||| |||||||||||||||||||||    
T  45368840 cgggggcactctttaaggattccaaaaaaagaaattattttataaaaaagttaaatatttcaattt 45368775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 343 - 462
Target Start/End: Complemental strand, 42760258 - 42760139
Alignment:
Q  343 cactctttaagcacaccaaaagaagaaactattctatacaaaagttaaatatttcaatttccaatgtactagttacataagttttcnnnnnnngttaact 442  Q
    |||||||||||||  ||||||| ||||| ||||| ||| |||| | |||| ||||||||||||||| | |  |||||||| ||||        |||| ||    
T  42760258 cactctttaagcattccaaaaggagaaattattccataaaaaaatcaaatgtttcaatttccaatgcattgattacataattttttttaaaaagttacct 42760159  T
Q  443 tttaaaggtcttaaagagtg 462  Q
    | ||||||||||||||||||    
T  42760158 tgtaaaggtcttaaagagtg 42760139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 342 - 408
Target Start/End: Complemental strand, 8920815 - 8920749
Alignment:
Q  342 gcactctttaagcacaccaaaagaagaaactattctatacaaaagttaaatatttcaatttccaatg 408  Q
    ||||||||||||||  ||||||| ||||| ||||| ||| |||||| |||| |||||||||||||||    
T  8920815 gcactctttaagcattccaaaaggagaaattattccatagaaaagtcaaatgtttcaatttccaatg 8920749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 339 - 408
Target Start/End: Complemental strand, 17157885 - 17157815
Alignment:
Q  339 ggggcactctttaagcacaccaaaagaagaaactattctat-acaaaagttaaatatttcaatttccaatg 408  Q
    |||||||||||||||||  ||||||| ||||| ||||| || | |||||| |||| |||||||||||||||    
T  17157885 ggggcactctttaagcattccaaaaggagaaattattccataaaaaaagtcaaatgtttcaatttccaatg 17157815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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