View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7644_high_11 (Length: 396)
Name: NF7644_high_11
Description: NF7644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7644_high_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 20 - 388
Target Start/End: Complemental strand, 43921449 - 43921081
Alignment:
| Q |
20 |
attacttctattactcatcaataaattaagttcaattgaagtatatcgctgttaatcaagtagcattttgaaaaggacacatacatagtcatagaatgca |
119 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43921449 |
attacttctattactcatcaatgaattaagttcaattgaaatagatcgctgttaatcaagtagcattttgaaaaggacacatacatagtcatagaatgca |
43921350 |
T |
|
| Q |
120 |
tgagtgaaattttgaagccnnnnnnnccttttatgttcagaagtatagcaacatattaacttgcaatttatttgcactaccaaatccaatcaatattgct |
219 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43921349 |
tgagtgaaattttgaagcctttttttccttttatgttcagaagtatagcaacatattaacttgcaatttatttgcactaccaaatccaatcaatattgct |
43921250 |
T |
|
| Q |
220 |
tatttactagaatgctctatacatttgactaactaccagtcaacgctagtaaaaactactagtctcttaccttattttctaccaaattcccaatgataaa |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43921249 |
tatttactagaatgctctatacatttgactaactaccagtcaatgctagtaaaaactactagtctcttaccttattttctaccaaattcccaatgataaa |
43921150 |
T |
|
| Q |
320 |
tgcaactagtagtttctttgatctacacagtaagtactctctttcattttacaaatttcatcatattct |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
43921149 |
tgcaactagtagtttctttgatctacacagtaagtactctctttcattttacaaatttcatcattttct |
43921081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University