View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7644_high_24 (Length: 233)
Name: NF7644_high_24
Description: NF7644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7644_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 159; Significance: 8e-85; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 20 - 210
Target Start/End: Complemental strand, 8401562 - 8401373
Alignment:
| Q |
20 |
atcacaattgaatcaagaattgttaagttagatcaagaaaaaataaatacaaatcttagaaaagtttgctagcaaattcatcaactgtagttccctcaac |
119 |
Q |
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| T |
8401562 |
atcacaattgaatcaagaattgttaagttagatcaagaaaaaaaaactaaaga-cttagaaaagtttgctagcaaattcatcaactgtagttccctcaac |
8401464 |
T |
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| Q |
120 |
acgagaataagctgattttctagcaagatctcttaattgtgacaaacttcttcctaatttcaaagccaatttaatttcaaacaaatctcca |
210 |
Q |
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| T |
8401463 |
acgagaataagctgattttctagcaagatctcttaattgtgacaaacttcttcccaatttcaaagccaatttaatttcaaataaatctcca |
8401373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 20 - 210
Target Start/End: Original strand, 8367848 - 8368037
Alignment:
| Q |
20 |
atcacaattgaatcaa-gaattgttaagttagatcaagaaaaaataaatacaaatcttagaaaagtttgctagcaaattcatcaactgtagttccctcaa |
118 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||| || || | | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8367848 |
atcacaattgaatcaaagaattgttaagttagatcaagaaaaaa-aactaaaga-cttagaaaagtttgctagcaaattcatcaactgtagttccctcaa |
8367945 |
T |
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| Q |
119 |
cacgagaataagctgattttctagcaagatctcttaattgtgacaaacttcttcctaatttcaaagccaatttaatttcaaacaaatctcca |
210 |
Q |
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| T |
8367946 |
cacgagaataagctgattttctagcaagatctcttaattgtgacaaacttcttcccaatttcaaagccaatttaatttcaaacaaatctcca |
8368037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 20 - 210
Target Start/End: Complemental strand, 8423144 - 8422950
Alignment:
| Q |
20 |
atcacaattgaatcaa-gaattgttaagttagatcaagaaaaaa-taaatacaaatc--ttagaaaagtttgctagcaaattcatcaactgtagttccct |
115 |
Q |
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|||| ||||||||||| ||||||||||||||||||||||||||| |||| ||| | ||||||||| ||||| ||||||||||||||| ||||||||| |
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| T |
8423144 |
atcataattgaatcaaagaattgttaagttagatcaagaaaaaagtaaactaaaaacaattagaaaagcttgcttgcaaattcatcaactatagttccct |
8423045 |
T |
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| Q |
116 |
caacacgagaataagctgattttctagcaagatctcttaattgtgacaaacttcttcctaatttcaaagccaatttaatttcaaacaaatctcca |
210 |
Q |
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|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
8423044 |
caacacgagagtaagctgattttatagcaagatctcttaattgtgacaaacttcttcccaatttcaaagccaatttaatttcaaacaaatctcca |
8422950 |
T |
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