View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7644_high_9 (Length: 401)
Name: NF7644_high_9
Description: NF7644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7644_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 16 - 384
Target Start/End: Original strand, 5553461 - 5553831
Alignment:
| Q |
16 |
tgtgtgacattgttaagatttggatgttgaattgcaagactccagagagagtaattcatcctgtaattgaaatttgttaccgcgattttgactcgccaat |
115 |
Q |
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| T |
5553461 |
tgtgtgacattgttaagatttggatgttgaattgcaagactccagagagagtaattcatcctgtaattgaaatttgttactgcgattttgactcgccaat |
5553560 |
T |
|
| Q |
116 |
agtccttatagtttgtcttcacatgccagtgaaccctaattgggcacatgtgatgagtgcattgcatcaatggttcattgtctttctttggagtatgaac |
215 |
Q |
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| T |
5553561 |
agtccttatagtttgtcttcacatgccagtgaaccctaattgggcacatgtgatgagtgcattgcatcaatggttcattgtctttctttggagtatgaac |
5553660 |
T |
|
| Q |
216 |
tcccaccatgctcagaatcttagattcactcctgcataacaaaccaacaatgattaaataatttcgaaattc--nnnnnnngaatgtttaaagcgtcatg |
313 |
Q |
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| T |
5553661 |
tcccaccatgctcagaatcttagattcactcctgcataacaaaccaacaatgattaaataatttcgaaattcttttttttttaatgtttaaagcgtcatg |
5553760 |
T |
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| Q |
314 |
aactttttcggaatataagacttactttacacagtttttcttgttttggcagccacatgcacaatggggac |
384 |
Q |
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| T |
5553761 |
aactttttcggaatataagacttactttacgcagtttttcttgttttggcagccacatgcacaatggggac |
5553831 |
T |
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Target: chr7 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 5010889 - 5011082
Alignment:
| Q |
19 |
gtgacattgttaagatttggatgttgaattgcaagactccagagagagtaattcatcctgtaattgaaatttgttaccgcgattttgactcgccaatagt |
118 |
Q |
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|||||||||||||||||||||||||| | |||||| |||| ||||| ||||||| || |||||||||||||| || || || ||||||| |||||||| |
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| T |
5010889 |
gtgacattgttaagatttggatgttgtacagcaagagtccaaagagaataattcaatctataattgaaatttgtaacagcaatcttgactctccaatagt |
5010988 |
T |
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| Q |
119 |
ccttatagtttgtcttcacatgccagtgaaccctaattgggcacatgtgatgagtgcattgcatcaatggttcattgtctttctttggagtatg |
212 |
Q |
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|||||||||| ||||||||||||||||| |||||||| |||||||| ||||| || || |||| |||||||||||||||| ||||||||||||| |
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| T |
5010989 |
ccttatagttagtcttcacatgccagtgtaccctaatggggcacatatgatgggtacactgcagcaatggttcattgtctctctttggagtatg |
5011082 |
T |
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