View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7644_low_11 (Length: 397)
Name: NF7644_low_11
Description: NF7644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7644_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 14419762 - 14420147
Alignment:
| Q |
1 |
atattgattagctggagaataatgaggttaggcaacttttaatttacgctagcaatacatatttgagccattggttaagaaaaatataagtgtgaatgtg |
100 |
Q |
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| T |
14419762 |
atattgattagctagagaataatgaggttaggcaacttttaatttacgctagcaatacatatttgagccattggttaagaaaaatataagtgtgaatgtg |
14419861 |
T |
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| Q |
101 |
gataaatataatttggatgtggttgaggaataattttcatcgagtagaaaggacgatactcatgcatttagacttaaatcaataatatg--ctctcnnnn |
198 |
Q |
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| T |
14419862 |
gataaatataatttggatgtggttgaggaataattttcatcgagtagaaaggaggatactcatgcatttagacttaaatcaataatatgctctctctttt |
14419961 |
T |
|
| Q |
199 |
nnnaaaaagttatcttatggtttgtggaggaaggatatcaattatcaagaaatgcatatataatgtgggtagggaccaaagatgaaaggaacatatctaa |
298 |
Q |
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| T |
14419962 |
tttaaaaagttatcttatggtttgtggaggaaggatatcaattatcaagaaatgcatatataatgtgggtagggaccaaagatgaaaggaacatatctaa |
14420061 |
T |
|
| Q |
299 |
attaattttggtcgttaatttggtgtggaaaataaaatgttgattctcattaggtcgacatacttctgtatgggggatgatgtcca |
384 |
Q |
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| T |
14420062 |
attaattttggtcgttaatttggtgtggaaaataaaatgttgattctcattaggtcgacatacttgtgtatggggtatgatgtcca |
14420147 |
T |
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