View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7644_low_14 (Length: 384)
Name: NF7644_low_14
Description: NF7644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7644_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 102; Significance: 1e-50; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 107 - 284
Target Start/End: Original strand, 14983273 - 14983450
Alignment:
| Q |
107 |
attctaataacaactaacaaatcaaacaaaaatatgagtcaaatagttatttagtgtttgctcattaaatgagttgcaacattgtgtgtaacggttttgt |
206 |
Q |
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| T |
14983273 |
attcttatagcaactaacaaatcaaataaaaatatgagtcaaataattatttagagtttggtcattaaaagagttgcaatattgtaggtaacatctttgt |
14983372 |
T |
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| Q |
207 |
agatttagacagttggatttgtataattttttgtattattcaatctaaccccgctgctctgaaacaatcatttttatg |
284 |
Q |
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| T |
14983373 |
agaattagacagttggatttgtttaattttttgtattattcaatctaaccacacttctctgcaacaatcatttttatg |
14983450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 18783074 - 18783133
Alignment:
| Q |
12 |
tgttagtaaaacaaaaagaagtttaggaattgatatacaattggttcatttttattatat |
71 |
Q |
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| T |
18783074 |
tgttagtaaaacaaaatgaagtttaggaattgatatacaattggttcatttttaatatat |
18783133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 233 - 363
Target Start/End: Original strand, 18783751 - 18783884
Alignment:
| Q |
233 |
ttttttgtattattcaatctaaccccgctgctct--gaaacaatcatttttatggtgtgcacatttcttccttttttatgtcaatcatttgtgttatgag |
330 |
Q |
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| T |
18783751 |
ttttttgtattattcattctaaccccacttctctctgcaacaatcatttttatggtgtgcttagttcttccctttttatgtacatcatttgtgctatggg |
18783850 |
T |
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| Q |
331 |
ttggtattca-tcttcttcttctattttttattt |
363 |
Q |
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| T |
18783851 |
ttggtcttaatttttcttcttctattgtttattt |
18783884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 14982642 - 14982680
Alignment:
| Q |
19 |
aaaacaaaaagaagtttaggaattgatatacaattggtt |
57 |
Q |
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| T |
14982642 |
aaaacaaaacaaagtttaggaattgatatacaattggtt |
14982680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 18507879 - 18507818
Alignment:
| Q |
7 |
tttggtgttagtaaaacaaaaagaagtttaggaattgatatacaattggttcatttttattatat |
71 |
Q |
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| T |
18507879 |
tttggtgttagtaaaacaaaacgaagtttaggaattg---cacaattggttcatttttattatat |
18507818 |
T |
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