View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7644_low_15 (Length: 383)
Name: NF7644_low_15
Description: NF7644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7644_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 7 - 379
Target Start/End: Original strand, 21150783 - 21151156
Alignment:
| Q |
7 |
taacaaatgatatcttgtccattgctggcaacattaatgttagtaatcaagactaaacaaaacatgttttatttatattttagataacaattcagctaga |
106 |
Q |
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| T |
21150783 |
taacaaatgatatcttgtccattgctggcaacattaatgttagtaatcaagactaaacaaaacatgttttatttatattttagataacaattcagctaga |
21150882 |
T |
|
| Q |
107 |
t-ttttaattaaatcatatcttgtaaattgtagcattatgacatcagaaagacatgtcatggagacttatgttatgacttttcaaatgtgatgaaacttt |
205 |
Q |
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| T |
21150883 |
aattttatttaaattatatcttgtaaattgtagcattatgacatcagaaagacatgtcatggagacttatgttatgacttttcaaatgtgatgaaacttt |
21150982 |
T |
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| Q |
206 |
tgaatgaaacgacagttaaggatgctttaggtgttggggacatagagtttgtttcatgcatcaaaatagtgtatgatgctttacagcaagattggatgaa |
305 |
Q |
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| T |
21150983 |
tgaatgaaaagacagttaaggatgctttaggtgttggggacatagagtttgtttcatgcagcaaaatagtgtatgatgctttacagcaagattggatgaa |
21151082 |
T |
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| Q |
306 |
gaaccatgaagtggatattccttcacttcttgaagaaggaatcaaggttcttatatatgttggagaatttgatc |
379 |
Q |
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| T |
21151083 |
gaaccatgaagtagatattccttcacttcttgaagaaggaatcaaggttcttatatatgttggagaatttgatc |
21151156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 126 - 377
Target Start/End: Original strand, 21126089 - 21126340
Alignment:
| Q |
126 |
ttgtaaattgtagcattatgacatcagaaagacatgtcatggagacttatgttatgacttttcaaatgtgatgaaacttttgaatgaaacgacagttaag |
225 |
Q |
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| T |
21126089 |
ttgtaaattgcagtactatgacataagaaagaaatgtcaaggaccactgtgttatgacttctcaaatttagagaaacttctaaacaaaaagacagttagg |
21126188 |
T |
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| Q |
226 |
gatgctttaggtgttggggacatagagtttgtttcatgcatcaaaatagtgtatgatgctttacagcaagattggatgaagaaccatgaagtggatattc |
325 |
Q |
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| T |
21126189 |
gatgctttaggtgttggggacatagactttgtgtcatgcagcagagtggtgtataatgcaatgttgcaagattggatgagaaactttgaagtggatattc |
21126288 |
T |
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| Q |
326 |
cttcacttcttgaagaaggaatcaaggttcttatatatgttggagaatttga |
377 |
Q |
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| T |
21126289 |
ctgaacttcttgaggatggaattaaggttcttatatatgctggggaatttga |
21126340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 126 - 377
Target Start/End: Original strand, 21146179 - 21146430
Alignment:
| Q |
126 |
ttgtaaattgtagcattatgacatcagaaagacatgtcatggagacttatgttatgacttttcaaatgtgatgaaacttttgaatgaaacgacagttaag |
225 |
Q |
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| T |
21146179 |
ttgtaaattgcagtactatgacataagaaagaaatgtcaaggaccactgtgttatgacttctcaaatttagagaaacttctaaacaaaaagacagttagg |
21146278 |
T |
|
| Q |
226 |
gatgctttaggtgttggggacatagagtttgtttcatgcatcaaaatagtgtatgatgctttacagcaagattggatgaagaaccatgaagtggatattc |
325 |
Q |
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| T |
21146279 |
gatgctttaggtgttggggacatagactttgtgtcatgcagcagagtggtgtataatgcaatgttgcaagattggatgagaaactttgaagtggatattc |
21146378 |
T |
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| Q |
326 |
cttcacttcttgaagaaggaatcaaggttcttatatatgttggagaatttga |
377 |
Q |
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| T |
21146379 |
ctgaacttcttgaggatggaattaaggttcttatatatgctggggaatttga |
21146430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 21115990 - 21116047
Alignment:
| Q |
321 |
tattccttcacttcttgaagaaggaatcaaggttcttatatatgttggagaatttgat |
378 |
Q |
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| T |
21115990 |
tattcctgaacttcttgaggatggaatcaaagttcttatatatgctggggaatttgat |
21116047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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