View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7644_low_16 (Length: 357)
Name: NF7644_low_16
Description: NF7644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7644_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 34660161 - 34659811
Alignment:
| Q |
1 |
tatcttagtttcatcttcttacatttgggaacgtgccacactaatcatgcttaatttgtttaattttttcataaactataatgcataaacaacatatgta |
100 |
Q |
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| T |
34660161 |
tatcttagtttcatcttcttacatttgggaacgtgccacactaatcatgcttaatttgtttaattttttcataaactataatgcataaacaacatatgta |
34660062 |
T |
|
| Q |
101 |
attatttcaccaatcaacatgagtgaagaagtactattttcgcatggaaaaccctgttacataatcatatttgacattcaatttttgtgggaggatacat |
200 |
Q |
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| T |
34660061 |
attatttcaccaatcaacatgagtgaagaagtactattttcgcatggaaaaccctgttacataatcatatttgacattcaatttttgtgggaggatacat |
34659962 |
T |
|
| Q |
201 |
gctacattagattgcacgacatgacatgtcgttggtgcacacttcttttccatacatacacattccttggaaaactatgtgactctagacttgatgaaca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34659961 |
gctacattagattgcacgacatgacatgtcgttggtgcacacttattttccatacatacacattccttggaaaactatgtgactctagacttgatgaaca |
34659862 |
T |
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| Q |
301 |
ttttcgatgtagtactagttactatgtatagagaaacattttctatgctac |
351 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34659861 |
ttttcaatgtagtactagttactatgtatagagaaacattttctatgctac |
34659811 |
T |
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