View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7644_low_17 (Length: 356)
Name: NF7644_low_17
Description: NF7644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7644_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 151; Significance: 8e-80; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 18 - 342
Target Start/End: Complemental strand, 25702918 - 25702595
Alignment:
| Q |
18 |
atatccttagagaataagttaataatctaaaaataaaattacaacagaggttttaaattgnnnnnnntaacatttaaaacttttaagatattaaatgaat |
117 |
Q |
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| T |
25702918 |
atatccttagagaataagttaataatctaaaaataaaattacaacagaggttttaaattgaaaaaaataacatttaaaacttttaagatattaaatgaat |
25702819 |
T |
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| Q |
118 |
ccatgaaataacttctgcatttggttttttaacttatgtctttagggcagaacataacatttcttttnnnnnnnnnnnttaaatgagaaatgatgac-nn |
216 |
Q |
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| T |
25702818 |
ccatgaaataacttctacatttagattcttaacttatgtctttagggcagaagataacatttcttttaaaaaaaaaaa--aaaagagaaatgatgacttt |
25702721 |
T |
|
| Q |
217 |
nnnnnatgtgtttttcaaataacggttatcattttgtctgtttaacnnnnnnnnnnttgattcatactaataaattttgttacatttgatgtannnnnnn |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
25702720 |
tttttatgtgtttttcaaataacggttatcattttgtctgtttaacaaaaaaaaatttgattcatactaataaattttgttacatttgatgtattttttt |
25702621 |
T |
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| Q |
317 |
nncttttggaatactctaaaatattt |
342 |
Q |
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|||||||||||||||||||||||| |
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| T |
25702620 |
ttcttttggaatactctaaaatattt |
25702595 |
T |
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