View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7644_low_2 (Length: 742)
Name: NF7644_low_2
Description: NF7644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7644_low_2 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 506; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 217 - 742
Target Start/End: Complemental strand, 54248521 - 54247996
Alignment:
| Q |
217 |
gagtgaatcccaacatgcaccaagtgaattgggtaaaagtgggtcacgttagcctgacgagtgaagactcaaacagcactaactaaatatttggattatt |
316 |
Q |
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| T |
54248521 |
gagtgaatcccaacatgcaccaggtgaattgggtaaaagtgggtcacgttagcctgacgagtgacgactcaaacagcactaactaaatatttggattata |
54248422 |
T |
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| Q |
317 |
ggttagtttggcaaaatcacggtggcattcataattttgttcgagctctaaagtgtgtcttttgctaaatccacacatagcactaatcgccaatctaaac |
416 |
Q |
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| T |
54248421 |
ggttagtttggcaaaatcacggtggcattcataattttgttcgagctctaaagtgtggcttttgctaaatccacacatagcactaatcgccaatctaaac |
54248322 |
T |
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| Q |
417 |
atgcaattatctaggcattgggaagatagataagataatagataacaaataaaatcatacatacatgcctcttctatccgatctcaattgaccgcgtcta |
516 |
Q |
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| T |
54248321 |
atgcaattatctaggcattgggaagatagataagataatagataacaaataaaatcatacatacatgcctcttctatccgatctcaattgaccgcgtcta |
54248222 |
T |
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| Q |
517 |
acaagatcagctacggaaccaggacgttcttttttcctggaaaatttggaaagagccctcaaagaagcaactaaaatcacaaccgcaacgcagacccaaa |
616 |
Q |
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| T |
54248221 |
acaagatcagctacggaaccaggacgttcttttttcctggaaaatttggaaagagccctcaaagaagcaaccaaaatcacaaccgcaacgcagacccaaa |
54248122 |
T |
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| Q |
617 |
tcggtaaattgatcccaatgtttcgattcgtctagaaaatacatatcaaataccataaaaaccctaatctgaattaaaataagaaattaagaaaattaaa |
716 |
Q |
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| T |
54248121 |
tcggtaaattgatcccaatgtttcgattcgtctagaaaatacatatcaaataccataaaaaccctaatctgaattaaaataagaaattaagaaaattaaa |
54248022 |
T |
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| Q |
717 |
gtgtgaaatgaaaccctaccaaaaat |
742 |
Q |
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| T |
54248021 |
gtgtgaaatgaaaccctaccaaaaat |
54247996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 54248738 - 54248584
Alignment:
| Q |
1 |
taaatctgacactaaaaatcacgtttgaagacaaaacttcttcnnnnnnncacgtttgaa-acaaaagttcaaaatctcaactacaattttataatccaa |
99 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
54248738 |
taaatctgacgctaaaaatcacgtttgaagacaaaacttcttcaaaaaaacacgtttgaagacaaaagttcaaaatctcaactacaattttataatccaa |
54248639 |
T |
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| Q |
100 |
atctaaggcaaaaggaattctatttgaaaattcatcaagacgaattataagcatc |
154 |
Q |
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| T |
54248638 |
atctaaggcaaaaggaattctatttgaaaattcatcaagacgaattataagcatc |
54248584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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