View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7644_low_21 (Length: 268)
Name: NF7644_low_21
Description: NF7644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7644_low_21 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 22764353 - 22764471
Alignment:
| Q |
19 |
ctacatctgggggagacagtagctctccaatatccactataaaacgagtgatacaaggagtttacaagaaattagatccaagagttttcaaagaacttat |
118 |
Q |
| |
|
|||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| | ||| |
|
|
| T |
22764353 |
ctacatctaggggagacagtagttctccaat--ccactataaaacgagtgatacaaggaggttacaagaaattagatcaaagagttttcaaagatc-tat |
22764449 |
T |
|
| Q |
119 |
ccctaatttcttttcatttatc |
140 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
22764450 |
ccctaatttcttttcatttatc |
22764471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 19 - 183
Target Start/End: Original strand, 33079713 - 33079875
Alignment:
| Q |
19 |
ctacatctggggg-agacagtagctctccaatatccactataaaacgagtgatacaaggagtttacaagaaattagatccaagagttttcaaagaactta |
117 |
Q |
| |
|
||||||||||||| ||| | ||||||||||| ||||||| ||| |||||||||||||| ||||||||||||||||||||||| |||| || ||| || |
|
|
| T |
33079713 |
ctacatctggggggagagatcagctctccaat--ccactatgaaattagtgatacaaggaggttacaagaaattagatccaagagctttcgaaaaac-ta |
33079809 |
T |
|
| Q |
118 |
tccctaatttcttttcatttatcaagtcactcagcctacaatgagatcctaagataaattaagaga |
183 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||| ||||||| ||| |||| ||| ||||||| |
|
|
| T |
33079810 |
tccctaatttctacccatatatcaagtcactcagcccacaatgaaatctcaagagaaaataagaga |
33079875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 96
Target Start/End: Original strand, 28388044 - 28388090
Alignment:
| Q |
50 |
atccactataaaacgagtgatacaaggagtttacaagaaattagatc |
96 |
Q |
| |
|
||||||||||||| || |||||||| ||| ||||||||||||||||| |
|
|
| T |
28388044 |
atccactataaaatgattgatacaaagaggttacaagaaattagatc |
28388090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University