View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7644_low_24 (Length: 243)
Name: NF7644_low_24
Description: NF7644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7644_low_24 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 21 - 243
Target Start/End: Complemental strand, 25576353 - 25576131
Alignment:
| Q |
21 |
ctaggatgctgaaagcccacttcccattttacccttctgggagacaatttctctgcaataactggtttggttaaattcttattattgtcctcctgcacgt |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
25576353 |
ctaggatgctgaaagcccacttcccattttacccttctgggagacaatttctctgcaataactggtttggttaaattctcattattgtcctcctgcacgt |
25576254 |
T |
|
| Q |
121 |
gttggtcctttaccgtggcatccaccgctgtagtggacactacagcttgtccatttacagcaatatctgagtccttggtttgtaaattctccaattccat |
220 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
25576253 |
gttggtcctttagcgtggcatccaccgctgtagtggacactacagcttgtccatttacagcaatatctgagtccttggattgtaaattctccaattccat |
25576154 |
T |
|
| Q |
221 |
tgtactgtcaatcccttgtcccc |
243 |
Q |
| |
|
||||||| ||||||||||||||| |
|
|
| T |
25576153 |
tgtactgccaatcccttgtcccc |
25576131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University