View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7644_low_4 (Length: 469)

Name: NF7644_low_4
Description: NF7644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7644_low_4
NF7644_low_4
[»] chr1 (4 HSPs)
chr1 (14-450)||(52082457-52082893)
chr1 (46-450)||(52092686-52093095)
chr1 (140-258)||(19468478-19468596)
chr1 (43-100)||(35901779-35901836)
[»] chr8 (8 HSPs)
chr8 (139-235)||(27922509-27922605)
chr8 (52-235)||(18315275-18315458)
chr8 (145-235)||(17636403-17636493)
chr8 (139-235)||(32151302-32151398)
chr8 (43-114)||(5767778-5767849)
chr8 (193-259)||(28246273-28246339)
chr8 (193-233)||(17628018-17628058)
chr8 (193-233)||(21235613-21235653)
[»] chr5 (5 HSPs)
chr5 (143-258)||(41889533-41889648)
chr5 (139-235)||(32267476-32267572)
chr5 (140-230)||(41901542-41901632)
chr5 (139-212)||(20478107-20478180)
chr5 (25-180)||(12845480-12845635)
[»] chr4 (17 HSPs)
chr4 (43-216)||(1754424-1754589)
chr4 (139-233)||(1548428-1548522)
chr4 (29-162)||(6006218-6006351)
chr4 (139-235)||(8187093-8187189)
chr4 (142-235)||(7307864-7307957)
chr4 (139-235)||(546914-547010)
chr4 (43-102)||(1528338-1528397)
chr4 (171-248)||(532222-532299)
chr4 (139-235)||(1524488-1524584)
chr4 (43-78)||(12120301-12120336)
chr4 (139-233)||(553480-553574)
chr4 (279-325)||(1754624-1754670)
chr4 (169-235)||(12121459-12121525)
chr4 (169-214)||(640946-640991)
chr4 (139-236)||(3438567-3438663)
chr4 (139-235)||(1513409-1513505)
chr4 (139-235)||(8184032-8184128)
[»] chr3 (12 HSPs)
chr3 (139-258)||(51113760-51113879)
chr3 (139-235)||(51120895-51120991)
chr3 (146-231)||(33714861-33714946)
chr3 (139-212)||(13470757-13470830)
chr3 (43-220)||(37580837-37581014)
chr3 (44-106)||(514859-514921)
chr3 (412-450)||(33708807-33708845)
chr3 (84-222)||(33708989-33709127)
chr3 (418-451)||(36810811-36810844)
chr3 (418-450)||(33093717-33093749)
chr3 (418-450)||(33396785-33396817)
chr3 (418-450)||(37580610-37580642)
[»] chr6 (14 HSPs)
chr6 (139-235)||(6432162-6432258)
chr6 (137-236)||(6423216-6423315)
chr6 (144-258)||(6585216-6585330)
chr6 (137-212)||(6426510-6426585)
chr6 (140-231)||(14802338-14802429)
chr6 (139-212)||(6394865-6394938)
chr6 (142-235)||(6410010-6410103)
chr6 (142-212)||(10579761-10579831)
chr6 (193-258)||(11936254-11936319)
chr6 (193-258)||(11948234-11948299)
chr6 (139-207)||(6402861-6402929)
chr6 (139-223)||(6594620-6594704)
chr6 (193-233)||(12102321-12102361)
chr6 (139-223)||(14820694-14820778)
[»] chr2 (3 HSPs)
chr2 (153-235)||(32785774-32785856)
chr2 (145-203)||(44575529-44575587)
chr2 (139-231)||(45245091-45245183)


Alignment Details
Target: chr1 (Bit Score: 417; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 14 - 450
Target Start/End: Original strand, 52082457 - 52082893
Alignment:
Q  14 acatcagcacacacattatgacaatcccacaaatttatctctctcagtcgtgtgcagttttctactacgtgcctcactcctttctctgtgatatgatcac 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  52082457 acatcagcacacacattatgacaatcccacaaatttatctctctcagtcgtgtgcagttttctactacgtgcccgactcctttctctgtgatatgatcac 52082556  T
Q  114 accgttccaagtccaattgtagtatcccacaacaactccttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaa 213  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52082557 accgttccaagtccaattgtagtatcccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaa 52082656  T
Q  214 tttggaaacttgaaagttcattgaaagtagattcagtgttgaacaagatctcatttccaagtgaataattttacaatatcttaaaacttcaacgataccg 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  52082657 tttggaaacttgaaagttcattgaaagtagattcagtgttgaacaagatctcatgtccaagtgaataattttacaatatcttaaaacttcaacgataccg 52082756  T
Q  314 tcagatatgcaatagcaatggcaatatctcaggtcaagcacttgcaagtttggaaaaagagaagccaacattttgacgctttcattcttcaacaatggat 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  52082757 tcagatatgcaatagcaatggcaatatctcaggtcaagcacttgcaagtttggaaaaagagaagccaacattttgatgctttcattcttcaacaatggat 52082856  T
Q  414 tgcgagccaaatggagagacttcacttgagggtatac 450  Q
    |||||||||||||||||||||||||||||||||||||    
T  52082857 tgcgagccaaatggagagacttcacttgagggtatac 52082893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 46 - 450
Target Start/End: Original strand, 52092686 - 52093095
Alignment:
Q  46 atttatctctctcagtcgtgtgcagttttctactacgtgcctcactcctttctctgtgatatgatcacaccgttccaagtccaattgtagtatcccacaa 145  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  52092686 atttatctctctcaatcgtgtgcagtttt-tactacgtgcctcactcctttctctgtgatatgatcacaccgttccaagtccaattgtagtagcccacaa 52092784  T
Q  146 caactccttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcattgaaagtagat 245  Q
     ||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52092785 aaactctttgagatcacatacaatgtgtcatcatcaatttttgtctttgccaagttcaacacctccaatttggaaacttgaaagttcattgaaagtagat 52092884  T
Q  246 tcagtgttgaacaagatctcatttccaagtgaataattttacaatatcttaaaacttcaacgataccgtcagatatgcaatagcaatggcaata------ 339  Q
    ||| |||||| ||||||||||  | ||| ||| ||||||||||| |||||||||||||||| ||||| || |||||||||||||||||||||||          
T  52092885 tcaatgttgaccaagatctcaagttcaaatgagtaattttacaacatcttaaaacttcaacaataccttcggatatgcaatagcaatggcaatatctcat 52092984  T
Q  340 tctcaggtcaagcacttgcaagtttggaaaaagagaagccaacattttgacgctttcattcttcaacaatggattgcgagccaaatggagagacttcact 439  Q
    ||||||||||||| | |||| |||||| |||||||||| ||||||||||| ||||||||| ||||||  ||||||||  |||||||||||||||||||||    
T  52092985 tctcaggtcaagcccctgcaggtttgggaaaagagaaggcaacattttgatgctttcatttttcaaccgtggattgcctgccaaatggagagacttcact 52093084  T
Q  440 tgagggtatac 450  Q
    |||||||||||    
T  52093085 tgagggtatac 52093095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 140 - 258
Target Start/End: Complemental strand, 19468596 - 19468478
Alignment:
Q  140 ccacaacaactccttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcattgaaa 239  Q
    ||||||||  || ||||||||||||| | ||||||||||||||  ||||| | |||||| |||||||||||||  |||| ||||  |||||||| |  ||    
T  19468596 ccacaacagttctttgagatcacataaagtgtttcatcatcaacctttgtatctgacaacttcaacacctccagcttgggaactacaaagttcactccaa 19468497  T
Q  240 gtagattcagtgttgaaca 258  Q
    ||||||||| | |||||||    
T  19468496 gtagattcactcttgaaca 19468478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 43 - 100
Target Start/End: Complemental strand, 35901836 - 35901779
Alignment:
Q  43 caaatttatctctctcagtcgtgtgcagttttctactacgtgcctcactcctttctct 100  Q
    ||||||||||||||||||| |||| ||||||||||  || || |||||||||||||||    
T  35901836 caaatttatctctctcagttgtgtacagttttctatgacttgtctcactcctttctct 35901779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 139 - 235
Target Start/End: Original strand, 27922509 - 27922605
Alignment:
Q  139 cccacaacaactccttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 235  Q
    ||||||||||||| ||||||||| ||| | || |||||||||||  ||||| | |||||||||||||||||||||||||| ||||| ||||||||||    
T  27922509 cccacaacaactctttgagatcatataaagtgcttcatcatcaacatttgtatatgacaagttcaacacctccaatttgggaacttcaaagttcatt 27922605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 52 - 235
Target Start/End: Complemental strand, 18315458 - 18315275
Alignment:
Q  52 ctctctcagtcgtgtgcagttttctactacgtgcctcactcctttctctgtgatatgatcacaccgttccaagtccaattgtagtatcccacaacaactc 151  Q
    |||| ||||| |||||||||||||||| || | | |  ||||||||||||||| || |  ||| ||||||||   || ||| |  | || || |||||||    
T  18315458 ctctatcagttgtgtgcagttttctaccacatacttttctcctttctctgtgacatcacaacagcgttccaataacagttgcaaaagcctacgacaactc 18315359  T
Q  152 cttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 235  Q
     ||||||||||||| | || ||||||||||| |||||| | |||||||||||||||||||| ||||| ||||| ||||||||||    
T  18315358 tttgagatcacatagagtgcttcatcatcaacttttgtatgtgacaagttcaacacctccagtttgggaactttaaagttcatt 18315275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 145 - 235
Target Start/End: Complemental strand, 17636493 - 17636403
Alignment:
Q  145 acaactccttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 235  Q
    ||||||| |||||||||||||||||| |||||| |||| |  ||| | |||||||||||||||||||||||||| ||||| ||||||||||    
T  17636493 acaactctttgagatcacatacaatgcttcatcgtcaactcctgtttgtgacaagttcaacacctccaatttgggaacttcaaagttcatt 17636403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 139 - 235
Target Start/End: Original strand, 32151302 - 32151398
Alignment:
Q  139 cccacaacaactccttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 235  Q
    ||||| ||||||| ||||||||||||| | ||||||||||||||   ||||   ||||||||| ||||||||||  ||||||||||  |||||||||    
T  32151302 cccactacaactctttgagatcacatagagtgtttcatcatcaaaccttgtacatgacaagtttaacacctccagattggaaacttcgaagttcatt 32151398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 114
Target Start/End: Complemental strand, 5767849 - 5767778
Alignment:
Q  43 caaatttatctctctcagtcgtgtgcagttttctactacgtgcctcactcctttctctgtgatatgatcaca 114  Q
    ||||||||||||||| ||| |||||||||| | ||| |||||| | ||||| || |||||||||| ||||||    
T  5767849 caaatttatctctctgagttgtgtgcagttgtttaccacgtgcatgactcccttgtctgtgatataatcaca 5767778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 259
Target Start/End: Complemental strand, 28246339 - 28246273
Alignment:
Q  193 tgacaagttcaacacctccaatttggaaacttgaaagttcattgaaagtagattcagtgttgaacaa 259  Q
    |||||||| ||||||||||| ||||| ||||| |||||||| || | |||| |||||| ||||||||    
T  28246339 tgacaagtccaacacctccagtttgggaacttcaaagttcaatgtatgtagcttcagtcttgaacaa 28246273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 193 - 233
Target Start/End: Complemental strand, 17628058 - 17628018
Alignment:
Q  193 tgacaagttcaacacctccaatttggaaacttgaaagttca 233  Q
    |||||||||||||||||||||||| |||| || ||||||||    
T  17628058 tgacaagttcaacacctccaatttagaaagtttaaagttca 17628018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 193 - 233
Target Start/End: Original strand, 21235613 - 21235653
Alignment:
Q  193 tgacaagttcaacacctccaatttggaaacttgaaagttca 233  Q
    |||||||||||||||||||| ||||| ||||| ||||||||    
T  21235613 tgacaagttcaacacctccagtttgggaacttcaaagttca 21235653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 143 - 258
Target Start/End: Complemental strand, 41889648 - 41889533
Alignment:
Q  143 caacaactccttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcattgaaagta 242  Q
    ||||||||| ||||||||  ||| | |||||||||||||| |||||| | ||| |||||||||||||||||||||| ||||| ||||||||||  |||||    
T  41889648 caacaactctttgagatcttataaagtgtttcatcatcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttcatttcaagta 41889549  T
Q  243 gattcagtgttgaaca 258  Q
    | |||| | |||||||    
T  41889548 gcttcactattgaaca 41889533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 139 - 235
Target Start/End: Original strand, 32267476 - 32267572
Alignment:
Q  139 cccacaacaactccttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 235  Q
    ||||||||||||| ||||||||| ||| | || ||||||||||| | |||| | |||||||||||| ||||||||||||| ||||| ||||||||||    
T  32267476 cccacaacaactctttgagatcatataaagtgcttcatcatcaactattgtttgtgacaagttcaatacctccaatttgggaacttcaaagttcatt 32267572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 140 - 230
Target Start/End: Complemental strand, 41901632 - 41901542
Alignment:
Q  140 ccacaacaactccttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagt 230  Q
    |||||||||||| ||||||||| ||| | || ||||||||||| |||||| | |||||||||||||||||||| ||||| ||||| |||||    
T  41901632 ccacaacaactctttgagatcatataaagtgcttcatcatcaacttttgtatatgacaagttcaacacctccagtttgggaacttcaaagt 41901542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 139 - 212
Target Start/End: Complemental strand, 20478180 - 20478107
Alignment:
Q  139 cccacaacaactccttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctcca 212  Q
    |||||||||| |||||||||||||| | |||||||| |||||||  ||||| | ||||||||||||||||||||    
T  20478180 cccacaacaattccttgagatcacagataatgtttcgtcatcaacatttgtatatgacaagttcaacacctcca 20478107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 180
Target Start/End: Original strand, 12845480 - 12845635
Alignment:
Q  25 cacattatgacaatcccacaaatttatctctctcagtcgtgtgcagttttctactacgtgcctcactcctttctctgtgatatgatcacaccgttccaag 124  Q
    |||||| |||||||||| |||||| ||||||||||    |||||| ||| |||| || ||||||||||| |||||||| | || || |||   ||||| |    
T  12845480 cacattttgacaatccctcaaattgatctctctcaactttgtgcattttgctaccacttgcctcactcccttctctgtaacatcattacaattttccagg 12845579  T
Q  125 tccaattgtagtatcccacaacaactccttgagatcacatacaatgtttcatcatc 180  Q
    |||||||| | ||  |||||||||||| |||||||  |||| | || |||||||||    
T  12845580 tccaattgcaatagaccacaacaactctttgagattgcatatagtgcttcatcatc 12845635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 8e-19; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 43 - 216
Target Start/End: Original strand, 1754424 - 1754589
Alignment:
Q  43 caaatttatctctctcagtcgtgtgcagttttctactacgtgcctcactcctttctctgtgatatgatcacaccgttccaagtccaattgtagtatccca 142  Q
    |||| |||||||| |||| |||||||| ||||||||||| ||| ||||||||||||||||||||| || |||   ||| || |||||||| ||||  |||    
T  1754424 caaacttatctctttcaggcgtgtgcatttttctactacttgcttcactcctttctctgtgatattataacatttttctaaatccaattgcagtagtcca 1754523  T
Q  143 caacaactccttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaattt 216  Q
     | |||||| |||||||||  ||        |||| | |||||||||||| |||||||||||||||||||||||    
T  1754524 gagcaactctttgagatcatgta--------catccttaatttttgtcttcgacaagttcaacacctccaattt 1754589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 139 - 233
Target Start/End: Complemental strand, 1548522 - 1548428
Alignment:
Q  139 cccacaacaactccttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttca 233  Q
    ||||||||||||| ||||||||||||  | |||||||||||||||  |||| | |||||||||||||||||||| ||||| || || ||||||||    
T  1548522 cccacaacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttca 1548428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 29 - 162
Target Start/End: Original strand, 6006218 - 6006351
Alignment:
Q  29 ttatgacaatcccacaaatttatctctctcagtcgtgtgcagttttctactacgtgcctcactcctttctctgtgatatgatcacaccgttccaagtcca 128  Q
    ||||||||||||  ||||||||||||||||| | || ||||||||||||| || ||| ||||||| |||| ||||| || || ||| ||| |||| || |    
T  6006218 ttatgacaatcctgcaaatttatctctctcaattgtttgcagttttctacgacttgcatcactcccttctttgtgacatcataacaacgtcccaaatcaa 6006317  T
Q  129 attgtagtatcccacaacaactccttgagatcac 162  Q
     ||| |||| |||| | |||||| ||||||||||    
T  6006318 gttgcagtagcccaaagcaactcattgagatcac 6006351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 139 - 235
Target Start/End: Complemental strand, 8187189 - 8187093
Alignment:
Q  139 cccacaacaactccttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 235  Q
    ||||||||||||| |||| ||  |||| | ||||| |||||||| | |||| | |||||||||||||||||||| |||||||| || ||||||||||    
T  8187189 cccacaacaactctttgaaattgcataaagtgttttatcatcaactcttgtatgtgacaagttcaacacctccagtttggaaatttcaaagttcatt 8187093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 142 - 235
Target Start/End: Original strand, 7307864 - 7307957
Alignment:
Q  142 acaacaactccttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 235  Q
    |||||||||| ||||||||| |   | || ||||||||||| || ||| | |||||||||||| ||||||||||||| ||||| ||||||||||    
T  7307864 acaacaactctttgagatcatacgtagtgcttcatcatcaacttctgtatatgacaagttcaatacctccaatttgggaactttaaagttcatt 7307957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 139 - 235
Target Start/End: Original strand, 546914 - 547010
Alignment:
Q  139 cccacaacaactccttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 235  Q
    ||||||||||||| ||||||||||||| | |||||||||||  |   ||||   ||||||||||| |||||||||||| | ||||| ||||||||||    
T  546914 cccacaacaactctttgagatcacatagagtgtttcatcattgacaattgtacgtgacaagttcaccacctccaatttaggaacttcaaagttcatt 547010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 1528397 - 1528338
Alignment:
Q  43 caaatttatctctctcagtcgtgtgcagttttctactacgtgcctcactcctttctctgt 102  Q
    ||||||||||||||||||| |||||||||||||||| || ||| | ||||| ||||||||    
T  1528397 caaatttatctctctcagttgtgtgcagttttctacaacttgcatgactccattctctgt 1528338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 171 - 248
Target Start/End: Original strand, 532222 - 532299
Alignment:
Q  171 tttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcattgaaagtagattca 248  Q
    ||||||||||||| ||||| | |||||||||||||||||| |  ||||  |||| ||||||||||  |||||||||||    
T  532222 tttcatcatcaatgtttgtatatgacaagttcaacacctctagcttggggacttcaaagttcattccaagtagattca 532299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 139 - 235
Target Start/End: Complemental strand, 1524584 - 1524488
Alignment:
Q  139 cccacaacaactccttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 235  Q
    ||||| |||||||  |||||||| ||| | ||||||||||||||   ||||   |||||| |||||||||||||| |||| ||||| ||||||||||    
T  1524584 cccacgacaactctgtgagatcatatagagtgtttcatcatcaacacttgtacgtgacaaattcaacacctccaaattgggaacttcaaagttcatt 1524488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 78
Target Start/End: Complemental strand, 12120336 - 12120301
Alignment:
Q  43 caaatttatctctctcagtcgtgtgcagttttctac 78  Q
    ||||||||||||||||||| ||||||||||||||||    
T  12120336 caaatttatctctctcagttgtgtgcagttttctac 12120301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 233
Target Start/End: Original strand, 553480 - 553574
Alignment:
Q  139 cccacaacaactccttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttca 233  Q
    |||| |||||||| |||| |||||||  | || ||||||||||| | ||||   |||||||||||||||||||| ||||  ||||| ||||||||    
T  553480 cccagaacaactctttgaaatcacattaagtgcttcatcatcaactcttgtaaatgacaagttcaacacctccagtttgagaactttaaagttca 553574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 325
Target Start/End: Original strand, 1754624 - 1754670
Alignment:
Q  279 taattttacaatatcttaaaacttcaacgataccgtcagatatgcaa 325  Q
    |||||||| || |||||||||||||||||||||| | ||||||||||    
T  1754624 taattttagaacatcttaaaacttcaacgatacctttagatatgcaa 1754670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 235
Target Start/End: Complemental strand, 12121525 - 12121459
Alignment:
Q  169 tgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 235  Q
    ||||||||||||||  ||||| | ||||||||||||||| || | ||||| ||||| ||||||||||    
T  12121525 tgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcatt 12121459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 214
Target Start/End: Original strand, 640946 - 640991
Alignment:
Q  169 tgtttcatcatcaatttttgtctttgacaagttcaacacctccaat 214  Q
    ||||||||||||||  ||||| | ||||||||||||||||||||||    
T  640946 tgtttcatcatcaacgtttgtatctgacaagttcaacacctccaat 640991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 236
Target Start/End: Complemental strand, 3438663 - 3438567
Alignment:
Q  139 cccacaacaactccttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcattg 236  Q
    ||||||||||||| ||||||| ||||  | | ||| |||||||| | |||| | ||||||| |||| ||||||||||| ||||| | |||||||||||    
T  3438663 cccacaacaactctttgagattacatggagtattt-atcatcaactcttgtatgtgacaagctcaatacctccaattttgaaacatcaaagttcattg 3438567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 139 - 235
Target Start/End: Complemental strand, 1513505 - 1513409
Alignment:
Q  139 cccacaacaactccttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 235  Q
    ||||| ||||| | ||||||| || || | ||||||||||||||  |||||   ||||||||||||||| || | ||||| ||||| ||||||||||    
T  1513505 cccacgacaacactttgagattacgtagagtgtttcatcatcaacatttgtaaatgacaagttcaacacttctagtttgggaacttcaaagttcatt 1513409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 139 - 235
Target Start/End: Complemental strand, 8184128 - 8184032
Alignment:
Q  139 cccacaacaactccttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 235  Q
    ||||||||||||| |||||||  |||| | || |  |||||||| | |||| | |||||||||||||||||| | ||| | ||||| ||||||||||    
T  8184128 cccacaacaactctttgagattgcatagagtgctatatcatcaactcttgtatgtgacaagttcaacacctctagtttcggaacttcaaagttcatt 8184032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 139 - 258
Target Start/End: Complemental strand, 51113879 - 51113760
Alignment:
Q  139 cccacaacaactccttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcattgaa 238  Q
    ||||||||||||| | ||||||||||| | ||||||||||||||   |||| ||||||||||  |||||||||| ||||| | ||| ||||||||||  |    
T  51113879 cccacaacaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagtttgggagcttcaaagttcattcca 51113780  T
Q  239 agtagattcagtgttgaaca 258  Q
    ||||| |||||| |||||||    
T  51113779 agtagcttcagttttgaaca 51113760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 139 - 235
Target Start/End: Complemental strand, 51120991 - 51120895
Alignment:
Q  139 cccacaacaactccttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 235  Q
    ||||| ||||||| ||||||| ||||| | | |||||||||||| | |||| |  ||||||||||||||||||||||||  ||||| ||||||||||    
T  51120991 cccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcatt 51120895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 146 - 231
Target Start/End: Complemental strand, 33714946 - 33714861
Alignment:
Q  146 caactccttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagtt 231  Q
    |||||| |||| ||| |||||||||   ||||||||||| |||  ||||||||||||| |||||||| ||||||||||| ||||||    
T  33714946 caactctttgaaatcgcatacaatgcgccatcatcaattcttgagtttgacaagttcagcacctccagtttggaaacttcaaagtt 33714861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 139 - 212
Target Start/End: Complemental strand, 13470830 - 13470757
Alignment:
Q  139 cccacaacaactccttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctcca 212  Q
    |||||||||| || ||||||||| ||| | ||||| ||||| ||  ||||| ||||||||||||||||||||||    
T  13470830 cccacaacaattctttgagatcatatagagtgttttatcattaacctttgtatttgacaagttcaacacctcca 13470757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 43 - 220
Target Start/End: Complemental strand, 37581014 - 37580837
Alignment:
Q  43 caaatttatctctctcagtcgtgtgcagttttctactacgtgcctcactcctttctctgtgatatgatcacaccgttccaagtccaattgtagtatccca 142  Q
    |||||| |||||||||||  || |||| |||||||||||  | |||||||| |||||||||| || || |||   ||  ||||||| ||| || | || |    
T  37581014 caaattaatctctctcaggtgtatgcatttttctactactagtctcactcccttctctgtgacatcattacaaaattgtaagtccagttgcagaagccga 37580915  T
Q  143 caacaactccttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaa 220  Q
       ||| || |||||||||||||||||  || |||||||||| |||  |||||||||||||| ||||| | |||||||    
T  37580914 gggcaaatcattgagatcacatacaatactttatcatcaattcttgagtttgacaagttcaatacctcgagtttggaa 37580837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 106
Target Start/End: Complemental strand, 514921 - 514859
Alignment:
Q  44 aaatttatctctctcagtcgtgtgcagttttctactacgtgcctcactcctttctctgtgata 106  Q
    ||||| |||||||||||||||||||||||||  || || ||| |||||||  |||||||||||    
T  514921 aaattgatctctctcagtcgtgtgcagtttttcaccacatgcttcactcccgtctctgtgata 514859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 412 - 450
Target Start/End: Complemental strand, 33708845 - 33708807
Alignment:
Q  412 attgcgagccaaatggagagacttcacttgagggtatac 450  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  33708845 attgtgagccaaatggagagacttcacttgatggtatac 33708807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 222
Target Start/End: Complemental strand, 33709127 - 33708989
Alignment:
Q  84 gcctcactcctttctctgtgatatgatcacaccgttccaagtccaattgtagtatcccacaacaactccttgagatcacatacaatgtttcatcatcaat 183  Q
    |||||||||| ||||| |||| ||||| ||| | ||||| |||||  ||||| | || |   |||||| |||||||  |||||||||   ||||||||||    
T  33709127 gcctcactcccttctccgtgacatgatgacatccttccaggtccagatgtagaagccgagggcaactctttgagattgcatacaatgcaccatcatcaat 33709028  T
Q  184 ttttgtctttgacaagttcaacacctccaatttggaaac 222  Q
    | |||  | ||||||||||| |||||||| |||||||||    
T  33709027 tcttgagtctgacaagttcagcacctccagtttggaaac 33708989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 451
Target Start/End: Complemental strand, 36810844 - 36810811
Alignment:
Q  418 agccaaatggagagacttcacttgagggtatact 451  Q
    ||||||||||||||||||||||||| ||||||||    
T  36810844 agccaaatggagagacttcacttgatggtatact 36810811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 418 - 450
Target Start/End: Complemental strand, 33093749 - 33093717
Alignment:
Q  418 agccaaatggagagacttcacttgagggtatac 450  Q
    ||||||||||||||||||||||||| |||||||    
T  33093749 agccaaatggagagacttcacttgacggtatac 33093717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 418 - 450
Target Start/End: Original strand, 33396785 - 33396817
Alignment:
Q  418 agccaaatggagagacttcacttgagggtatac 450  Q
    ||||||||||||||||||||||||| |||||||    
T  33396785 agccaaatggagagacttcacttgatggtatac 33396817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 418 - 450
Target Start/End: Complemental strand, 37580642 - 37580610
Alignment:
Q  418 agccaaatggagagacttcacttgagggtatac 450  Q
    ||||||||||||||||||||||||| |||||||    
T  37580642 agccaaatggagagacttcacttgatggtatac 37580610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 139 - 235
Target Start/End: Original strand, 6432162 - 6432258
Alignment:
Q  139 cccacaacaactccttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 235  Q
    |||||||||| || || |||||||||| | ||||||||||||||   |||| ||||||||||||||||||| ||  |||| ||||| ||||||||||    
T  6432162 cccacaacaattctttaagatcacataaagtgtttcatcatcaacgcttgtatttgacaagttcaacaccttcagcttgggaacttcaaagttcatt 6432258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 137 - 236
Target Start/End: Original strand, 6423216 - 6423315
Alignment:
Q  137 atcccacaacaactccttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcattg 236  Q
    ||||||||||||||| |||||||| |||| | ||||| |||   || | |||| ||||||||||||||||||||||  |||| ||||| |||||||||||    
T  6423216 atcccacaacaactctttgagatcgcatagagtgttttatcgctaactcttgtatttgacaagttcaacacctccagcttgggaacttaaaagttcattg 6423315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 144 - 258
Target Start/End: Complemental strand, 6585330 - 6585216
Alignment:
Q  144 aacaactccttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcattgaaagtag 243  Q
    |||||||| ||||||||||||| | ||||||||||||||  ||||| | |||||||||||| |||||||| | || ||||  |||||| |||  ||||||    
T  6585330 aacaactctttgagatcacatagagtgtttcatcatcaacctttgtatctgacaagttcaatacctccaactgggtaactaaaaagtttattccaagtag 6585231  T
Q  244 attcagtgttgaaca 258  Q
     |||| | |||||||    
T  6585230 cttcactcttgaaca 6585216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 137 - 212
Target Start/End: Original strand, 6426510 - 6426585
Alignment:
Q  137 atcccacaacaactccttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctcca 212  Q
    |||| ||||||| || |||||||| |||| || ||||||||||||||  |||| |||||||| |||||||||||||    
T  6426510 atccgacaacaattctttgagatcgcataaaaagtttcatcatcaatgcttgtgtttgacaaattcaacacctcca 6426585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 140 - 231
Target Start/End: Original strand, 14802338 - 14802429
Alignment:
Q  140 ccacaacaactccttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagtt 231  Q
    ||||||||| || |||| |||||||| | ||||||||||||||  ||||| |||||||| |||||||| ||||  |||| ||||| ||||||    
T  14802338 ccacaacaattctttgaaatcacatagagtgtttcatcatcaacctttgtatttgacaaattcaacacttccatcttgggaacttcaaagtt 14802429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 139 - 212
Target Start/End: Original strand, 6394865 - 6394938
Alignment:
Q  139 cccacaacaactccttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctcca 212  Q
    |||||||||| || ||||||||||| | |  |||||||||||||   |||| ||||||||||||||||||||||    
T  6394865 cccacaacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctcca 6394938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 142 - 235
Target Start/End: Original strand, 6410010 - 6410103
Alignment:
Q  142 acaacaactccttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 235  Q
    ||||||| || ||||||||||||| |  |||||||||||||   |||| |||||| |||||||||||| ||  |||| ||||| ||||||||||    
T  6410010 acaacaattctttgagatcacataaagagtttcatcatcaacgcttgtatttgactagttcaacaccttcagcttgggaacttcaaagttcatt 6410103  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 212
Target Start/End: Complemental strand, 10579831 - 10579761
Alignment:
Q  142 acaacaactccttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctcca 212  Q
    ||||||| || ||||||||  ||| | ||||| |||||||| |||||| | ||||||||||||||||||||    
T  10579831 acaacaattctttgagatcgaatagagtgttttatcatcaacttttgtatatgacaagttcaacacctcca 10579761  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 258
Target Start/End: Complemental strand, 11936319 - 11936254
Alignment:
Q  193 tgacaagttcaacacctccaatttggaaacttgaaagttcattgaaagtagattcagtgttgaaca 258  Q
    |||||||| ||||||||||| ||||| ||||| |||||||| || | |||| |||||| |||||||    
T  11936319 tgacaagtccaacacctccagtttgggaacttcaaagttcaatgtacgtagcttcagtcttgaaca 11936254  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 258
Target Start/End: Complemental strand, 11948299 - 11948234
Alignment:
Q  193 tgacaagttcaacacctccaatttggaaacttgaaagttcattgaaagtagattcagtgttgaaca 258  Q
    |||||||| ||||||||||| ||||| ||||| |||||||| || | |||| |||||| |||||||    
T  11948299 tgacaagtccaacacctccagtttgggaacttcaaagttcaatgtacgtagcttcagtcttgaaca 11948234  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 139 - 207
Target Start/End: Original strand, 6402861 - 6402929
Alignment:
Q  139 cccacaacaactccttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacac 207  Q
    ||||| |||| || ||||||||||||| | ||||||||||||||  || || | |||||||||||||||    
T  6402861 cccactacaattctttgagatcacatagagtgtttcatcatcaaccttcgtatctgacaagttcaacac 6402929  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 139 - 223
Target Start/End: Complemental strand, 6594704 - 6594620
Alignment:
Q  139 cccacaacaactccttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaact 223  Q
    |||||||||| || |||||||||||   | ||| ||||||||||  | ||| |||||||||| ||||||||||| ||||| ||||    
T  6594704 cccacaacaattctttgagatcacacgtagtgtctcatcatcaacctctgtatttgacaagtacaacacctccagtttgggaact 6594620  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 193 - 233
Target Start/End: Original strand, 12102321 - 12102361
Alignment:
Q  193 tgacaagttcaacacctccaatttggaaacttgaaagttca 233  Q
    |||||||||||||||||||| ||||| ||||| ||||||||    
T  12102321 tgacaagttcaacacctccagtttgggaacttcaaagttca 12102361  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 139 - 223
Target Start/End: Original strand, 14820694 - 14820778
Alignment:
Q  139 cccacaacaactccttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaact 223  Q
    |||||||||| || | ||||||| ||| | |||||||| |||||  ||||| ||||| |||||||||||||| || |||| ||||    
T  14820694 cccacaacaattcttggagatcatataaagtgtttcattatcaacctttgtatttgataagttcaacacctctaacttgggaact 14820778  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 153 - 235
Target Start/End: Complemental strand, 32785856 - 32785774
Alignment:
Q  153 ttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 235  Q
    ||||||||||||| | || ||||||||||||| |||| | |||||||||||||||||| | ||||| | ||| ||||||||||    
T  32785856 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagctttaaagttcatt 32785774  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 203
Target Start/End: Complemental strand, 44575587 - 44575529
Alignment:
Q  145 acaactccttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttca 203  Q
    ||||||| ||||||||||||||||||| |||||||||| | |||| |||||||| ||||    
T  44575587 acaactctttgagatcacatacaatgtgtcatcatcaactcttgtttttgacaaattca 44575529  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 139 - 231
Target Start/End: Complemental strand, 45245183 - 45245091
Alignment:
Q  139 cccacaacaactccttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagtt 231  Q
    ||||| ||||||| ||||||||||||  | ||||||||||||||   |||||| |||||| ||||||||||| | ||| | ||||| ||||||    
T  45245183 cccacgacaactctttgagatcacatggagtgtttcatcatcaaccattgtctctgacaaattcaacacctcaagttttggaacttcaaagtt 45245091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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