View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7644_low_6 (Length: 439)
Name: NF7644_low_6
Description: NF7644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7644_low_6 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 398; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Original strand, 43920643 - 43921081
Alignment:
| Q |
1 |
cttaatgctaaactagtctttcctgttcccatgtctccaagaagtacctacacgaagagccatataaataaattctatataagtctataactatgatcct |
100 |
Q |
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| T |
43920643 |
cttaatgctaaactagtctttcctgttcccatgtctccaagaagtacctacaagaagagccatataaataaattctatataagtctataactatgatcct |
43920742 |
T |
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| Q |
101 |
aataaacccaatattagattaaaaaatttaaaataatcatgtcatagagattggacaaagttttacgttttgctgctcaagtttaacacaaccctctcct |
200 |
Q |
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| T |
43920743 |
aataaacctaatattagattaaaaaatttaaaataatcatgtcatagagattggacaaagttttacgttttgctgctcaagtttaacacaaccctctcct |
43920842 |
T |
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| Q |
201 |
tttacctgggattttgaccggctatgcataacaaagcttaacataggtaggattttttaacataataataacttgatagaagaagatcaagtacatattc |
300 |
Q |
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| T |
43920843 |
tttacctgggattttgaccggctatgcatagcaaagcttaacataggtaggattttttaacataataataacttgatagaagaagatcaagtacatattc |
43920942 |
T |
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| Q |
301 |
atnnnnnnntgactggtatctggaacacaaaaacaaaatttagtaataaggtaagacatacctaccagcttggcttgaatgatcttattccccggtcttg |
400 |
Q |
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| T |
43920943 |
ataaaaaaatgactggtatctggaacaaaaaaacaaaatttagtaataaggtaagacatacctaccagcttggcttgaatgatcttattccccggtcttg |
43921042 |
T |
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| Q |
401 |
acatactaataagttgaaaaatattttgtagaagttgca |
439 |
Q |
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| T |
43921043 |
acatactaataagttgcaaaatattttgtagaagttgca |
43921081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 137 - 226
Target Start/End: Original strand, 23714881 - 23714969
Alignment:
| Q |
137 |
tcatgtcatagagattggacaaagttttacgttttgctgctcaagtttaacacaaccctctccttttacctgggattttgaccggctatg |
226 |
Q |
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| T |
23714881 |
tcatgtcatagggattagataaagttttacgttaat-tgctcaagtctaacacaaccctcttcttttacctggacttgggaccggctatg |
23714969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 137 - 226
Target Start/End: Original strand, 24102553 - 24102641
Alignment:
| Q |
137 |
tcatgtcatagagattggacaaagttttacgttttgctgctcaagtttaacacaaccctctccttttacctgggattttgaccggctatg |
226 |
Q |
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| T |
24102553 |
tcatgtcatagggattagataaagttttacgttaat-tgctcaagtctaacacaaccctcttcttttacctggacttgggaccggctatg |
24102641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 137 - 206
Target Start/End: Complemental strand, 2793138 - 2793070
Alignment:
| Q |
137 |
tcatgtcatagagattggacaaagttttacgttttgctgctcaagtttaacacaaccctctccttttacc |
206 |
Q |
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| T |
2793138 |
tcatgtcatagatattggacaaagttttatg-tttgctgcccaagcttaacataaccgtctccttttacc |
2793070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 235
Target Start/End: Complemental strand, 26916327 - 26916275
Alignment:
| Q |
183 |
ttaacacaaccctctccttttacctgggattttgaccggctatgcataacaaa |
235 |
Q |
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| T |
26916327 |
ttaacacaaccctctccttctacctgggcttgggaccggctatgcataacaaa |
26916275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 26916268 - 26916218
Alignment:
| Q |
185 |
aacacaaccctctccttttacctgggattttgaccggctatgcataacaaa |
235 |
Q |
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| T |
26916268 |
aacacaaccctctccgtttacctgggcttgggaccggctatgcatagcaaa |
26916218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 226
Target Start/End: Original strand, 39668780 - 39668868
Alignment:
| Q |
137 |
tcatgtcatagagattggacaaagttttacgttttgctgctcaagtttaacacaaccctctccttttacctgggattttgaccggctatg |
226 |
Q |
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| T |
39668780 |
tcatgtcatagagattcgacaaagttttacg-ttggctgtcgaggactaacacaaccctcaccttttacccgggcttgggaccggctatg |
39668868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 36915440 - 36915398
Alignment:
| Q |
184 |
taacacaaccctctccttttacctgggattttgaccggctatg |
226 |
Q |
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| T |
36915440 |
taacacaaccctctccttttatctgggctttggaccggctatg |
36915398 |
T |
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