View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7644_low_8 (Length: 417)
Name: NF7644_low_8
Description: NF7644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7644_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 252
Target Start/End: Complemental strand, 2495123 - 2494879
Alignment:
| Q |
17 |
cacataaaaaatcttttcttcaccatagatgttagagccatggacataaccttaaccccaacacccacacc------agcaccaacatcaacaacatcaa |
110 |
Q |
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| T |
2495123 |
cacataaaaaatcttttcttcaccatagatgttagagccatggacataaccttaaccccaacaccaacacctacaccagcaccaacatcaacaacatcaa |
2495024 |
T |
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| Q |
111 |
tagcaccaaccatattaacagcatctacaacaaccttaactaaatcaccagaacaaca---tgaaactgaaacacccacaacaaaattcacaacctcaac |
207 |
Q |
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| T |
2495023 |
tagcaccaaccatattaacagcatctacaacaaccttaactaaatcaccagaacaacaacatgaaactgaaacacccacaacaaaattcacaacctcaac |
2494924 |
T |
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| Q |
208 |
aaccccaaaaatctcacctttttcaaatggtgttctcaaacgttt |
252 |
Q |
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| T |
2494923 |
aaccccaaaaatctcacctttttcaaatggtgttctcaaacgttt |
2494879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 322 - 410
Target Start/End: Complemental strand, 2494818 - 2494730
Alignment:
| Q |
322 |
agaatgtctcaaaaaccatgcagcaaacctaggtggtcatgccctagatggatgtggtgaattcatgacatcaccaacagcaacaccaa |
410 |
Q |
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| T |
2494818 |
agaatgtctcaaaaaccatgcagcaaacctaggtggtcatgccctagatggctgtggtgaattcatgacatcaccaacagcaacaccaa |
2494730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 322 - 399
Target Start/End: Complemental strand, 3684081 - 3684004
Alignment:
| Q |
322 |
agaatgtctcaaaaaccatgcagcaaacctaggtggtcatgccctagatggatgtggtgaattcatgacatcaccaac |
399 |
Q |
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| T |
3684081 |
agaatgtctcaaaaaccacgtggcaaccctaggtggtcatgccctagacggttgttgtgaattcatgccatcaccaac |
3684004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 322 - 388
Target Start/End: Original strand, 24181069 - 24181135
Alignment:
| Q |
322 |
agaatgtctcaaaaaccatgcagcaaacctaggtggtcatgccctagatggatgtggtgaattcatg |
388 |
Q |
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| T |
24181069 |
agaatgtctcaaaaatcatgctgcatccctaggtggacatgcacttgatggatgtggtgaattcatg |
24181135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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