View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7645_high_13 (Length: 250)
Name: NF7645_high_13
Description: NF7645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7645_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 36942120 - 36942340
Alignment:
| Q |
18 |
ataaacacctccaaatcctccttgtcctagcttatgctcatctttgaaattattagctgcatttgctaattctgcatatgtatacttcttgggtcctgtc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36942120 |
ataaacacctccaaatcctccttgtcctagcttatgctcatctttgaaattattagctgcatttgctaattctgcatatgtatacttcttgggtcctgtc |
36942219 |
T |
|
| Q |
118 |
cctcttccgaaatcttcacccatgtactcttcaaattcaccatcttcatgttctcttcttttcctccacaagaaaacccaaataaaaccgaatacaccaa |
217 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
36942220 |
cctcttccgaaatcttcacccatgtactcttgaaattcaccatcttcctgttctcttcttttcctccacaagaaaacccaaataaaaccaaatacaccaa |
36942319 |
T |
|
| Q |
218 |
tgagaacaaatccacaggttc |
238 |
Q |
| |
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||||||||||||||| ||||| |
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| T |
36942320 |
tgagaacaaatccaccggttc |
36942340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 18 - 164
Target Start/End: Complemental strand, 36938998 - 36938852
Alignment:
| Q |
18 |
ataaacacctccaaatcctccttgtcctagcttatgctcatctttgaaattattagctgcatttgctaattctgcatatgtatacttcttgggtcctgtc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||| | ||||||||||||||||||||||||| | ||||||| | |
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| T |
36938998 |
ataaacacctccaaatcctccttgtcctagcttatactcgtctttgaaatcattagctgcgtgtgctaattctgcatatgtatacttcctaggtcctgcc |
36938899 |
T |
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| Q |
118 |
cctcttccgaaatcttcacccatgtactcttcaaattcaccatcttc |
164 |
Q |
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|| ||||| ||||| || ||||||||||||||||||||||||||||| |
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| T |
36938898 |
ccccttccaaaatcctctcccatgtactcttcaaattcaccatcttc |
36938852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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