View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7645_high_16 (Length: 247)
Name: NF7645_high_16
Description: NF7645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7645_high_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 131 - 225
Target Start/End: Complemental strand, 11368413 - 11368319
Alignment:
| Q |
131 |
ctcacttatgcaaaagcatagaagagaatccaaaattggtgtgtctaaccaagaaaaatactccacacagcataaaaatagctcctgagtatctt |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11368413 |
ctcacttatgcaaaagcatagaagagaatccaaaattggtgtgtctaaccaagaaaaatactccacacagcataaaaatagctcctgagtatctt |
11368319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 11368533 - 11368477
Alignment:
| Q |
11 |
cgaagaatattcaatatcatgtatatacaaatcataacatgaggtaaattatcaagt |
67 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11368533 |
cgaaaaatattcaatatcatgtatatacaaatcataacatgaggtaaattatcaagt |
11368477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University