View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7645_high_18 (Length: 241)
Name: NF7645_high_18
Description: NF7645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7645_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 14 - 223
Target Start/End: Complemental strand, 31828695 - 31828486
Alignment:
| Q |
14 |
agaccaattaaacaatttaagaacaattgaagcttgttttgagtgaaacctcagattgcaaatctaataggctttaattaaacagttaattacataatta |
113 |
Q |
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| T |
31828695 |
agactaattaaacaatttaagaacaattgaagcttgttttgagtgaaacctcagattgcaaatctaataggctttaattaaacagttaattacataatta |
31828596 |
T |
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| Q |
114 |
actacattaaattgagtaatcacctccataaagaacatcatcatccgcttgaaagtcttcatttttactcttgatattaaaccatttcttgaccaaagtt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31828595 |
actacattaaattgagtaatcacctccataaagaacatcatcatccgcttgaaagtcttcatttttactcttgatattaaaccatttcttgaccaaagtt |
31828496 |
T |
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| Q |
214 |
ttgggccatg |
223 |
Q |
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|||||||||| |
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| T |
31828495 |
ttgggccatg |
31828486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 223
Target Start/End: Original strand, 38124245 - 38124316
Alignment:
| Q |
152 |
catcatccgcttgaaagtcttcatttttactcttgatattaaaccatttcttgaccaaagttttgggccatg |
223 |
Q |
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||||||| ||||||||||||| | ||| |||||||||| |||||||| |||||||| ||||| ||||||| |
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| T |
38124245 |
catcatctgcttgaaagtcttgagatttggtcttgatattgaaccattttttgaccaatgtttttggccatg |
38124316 |
T |
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