View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7645_high_3 (Length: 583)
Name: NF7645_high_3
Description: NF7645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7645_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 492; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 18 - 565
Target Start/End: Original strand, 28437846 - 28438398
Alignment:
| Q |
18 |
agaagtaaaagggtagtgaaatgcagtagtggaatgggattaggtgacttcattggaggagatttggttaaatttgatattggacgttggctttcagatg |
117 |
Q |
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| T |
28437846 |
agaagtaaaagggtagtgaaatgcagtagtggaataggattaggtgacttcattggaggagatttggttaaatttgatattggacgttggctttcagatg |
28437945 |
T |
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| Q |
118 |
ttgaagaacataaagcacttgcaatatatactcctcatgaaggagggtatgaaggacgttacttatcgcgtcttcaacgtcaaggttactattttcttga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28437946 |
ttgaagaacataaagcacttgcaatatatactcctcatgaaggagggtatgaaggacgttacttatcgcgtcttcaacgtcaaggttactattttcttga |
28438045 |
T |
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| Q |
218 |
tcttacagctcgtggtcttggtgatcctgaaaccactctcaccaaagttcaccctgtttgccctgtaagtacataccttttgtctcttttcttattaatt |
317 |
Q |
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| T |
28438046 |
tcttacagctcgtggtcttggtgatcctgaaaccactctcaccaaagttcaccctgtttgccctgtaagtacataccttgtgtctcttttcttattaatt |
28438145 |
T |
|
| Q |
318 |
ttat----gaacaaaattgaccttgggaaaacatatttgaggactaaattgactacctaaaaatagattcgagtatcaaaatgaatgataaaagacactc |
413 |
Q |
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| T |
28438146 |
ttatgaacgaacgaaattgacctagggaaaacatatttgaggactaaattgactacctaaaaatagattcgagtatcaaaatgaatgataaaagatactc |
28438245 |
T |
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| Q |
414 |
ttgtgggcatgcttgcaatttcgatacatttagaaactatataatgatatatttagcgcctcacacatattcaagaaccaaaatagttgtttgctccttt |
513 |
Q |
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| T |
28438246 |
ttgtgggcatgcttgcaatttcgatacatttagaaactatatagtgatatatatagcgcctcacacatattcaagaaccaaaatagttgtttgctccttt |
28438345 |
T |
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| Q |
514 |
aaaatac-ttttcggctttcaatgattaatagctattactaccaatgtagtac |
565 |
Q |
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| T |
28438346 |
aaaatactttttcggcttttaatgattaatagctattattaccaatgtagtac |
28438398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 27759549 - 27759469
Alignment:
| Q |
18 |
agaagtaaaagggtagtgaaatgcagtagtggaatgggattaggtgacttcattggaggagatttggttaaatttgatatt |
98 |
Q |
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| T |
27759549 |
agaagtaagaggatagtaaaatgcagttgttgattaggattaggagactttattggaggagatttggataaatttgatatt |
27759469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 341 - 378
Target Start/End: Original strand, 25009316 - 25009353
Alignment:
| Q |
341 |
aaaacatatttgaggactaaattgactacctaaaaata |
378 |
Q |
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|||||| ||||||||||||||||||||||||||||||| |
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| T |
25009316 |
aaaacacatttgaggactaaattgactacctaaaaata |
25009353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 341 - 373
Target Start/End: Complemental strand, 20545362 - 20545330
Alignment:
| Q |
341 |
aaaacatatttgaggactaaattgactacctaa |
373 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
20545362 |
aaaacatatttgaggactaaattgactacctaa |
20545330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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