View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7645_low_16 (Length: 260)

Name: NF7645_low_16
Description: NF7645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7645_low_16
NF7645_low_16
[»] chr8 (2 HSPs)
chr8 (1-243)||(5198441-5198676)
chr8 (22-240)||(5177972-5178186)
[»] chr5 (1 HSPs)
chr5 (7-53)||(14191104-14191150)
[»] chr2 (4 HSPs)
chr2 (7-53)||(35611522-35611568)
chr2 (7-52)||(27194351-27194395)
chr2 (7-52)||(27844165-27844209)
chr2 (7-52)||(39441378-39441423)
[»] scaffold0356 (1 HSPs)
scaffold0356 (7-52)||(15343-15388)
[»] chr6 (2 HSPs)
chr6 (7-52)||(16015331-16015376)
chr6 (7-52)||(18344638-18344682)
[»] chr4 (1 HSPs)
chr4 (7-52)||(617886-617930)
[»] chr1 (2 HSPs)
chr1 (7-52)||(2331046-2331091)
chr1 (7-52)||(48233891-48233935)


Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 5198676 - 5198441
Alignment:
Q  1 ctctaaatttgttctaattaccatcaatgacaattacaacatgttctggcctagctgcaatgcacacatcatgttctgcaatctttattgattaatttca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5198676 ctctaaatttgttctaattaccatcaatgacaattacaacatgttctggcctagctgcaatgcacacatcatgttctgcaatctttattgattaatttca 5198577  T
Q  101 aattaggaagttagccgttgagttacttggaannnnnnnnatgaatataataactcaatcaatatgtgtattttatttttctcgtgaaatatttgcaaat 200  Q
    |||||||||||||||||||||       ||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5198576 aattaggaagttagccgttga-------ggaattttttttatgaatataataactcaatcaatatgtgtattttatttttctcgtgaaatatttacaaat 5198484  T
Q  201 aggaacaagtatgcgagggttatctattttcatatgaactagt 243  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  5198483 aggaacaagtatgcgagggttatctattttcatatgaactagt 5198441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 22 - 240
Target Start/End: Original strand, 5177972 - 5178186
Alignment:
Q  22 catcaatgacaattacaacatgttctggcctagctgcaatgcacacatcatgttctgcaatctttattgattaatttcaaattaggaagttagccgttga 121  Q
    ||||||||| |||||||||||||||  |||||| ||||||| ||||||||||||||||||||||| |||||||||||| |||||||| |||||||| |||    
T  5177972 catcaatgaaaattacaacatgttc--gcctagttgcaatgtacacatcatgttctgcaatctttcttgattaatttcgaattaggaggttagccgatga 5178069  T
Q  122 gttacttggaannnnnnnnatgaatataataactcaatcaatatgtgtattttatttttctcgtgaaatatttgcaaataggaacaagtatgcgagggtt 221  Q
    ||||||| |||        |||||||||| | ||||||||  |||||||||||||||||||||||||| |||| ||||| |||||||||||| ||||| |    
T  5178070 gttactttgaaattttttgatgaatataacagctcaatca--atgtgtattttatttttctcgtgaaacatttacaaattggaacaagtatgtgagggct 5178167  T
Q  222 atctattttcatatgaact 240  Q
    |||||||||||||||||||    
T  5178168 atctattttcatatgaact 5178186  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 14191150 - 14191104
Alignment:
Q  7 atttgttctaattaccatcaatgacaattacaacatgttctggccta 53  Q
    |||||||||||||  |||||||||||||||||||||||| |||||||    
T  14191150 atttgttctaattctcatcaatgacaattacaacatgttatggccta 14191104  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 35611522 - 35611568
Alignment:
Q  7 atttgttctaattaccatcaatgacaattacaacatgttctggccta 53  Q
    |||||||||||||  |||||||||||||||||||||||| |||||||    
T  35611522 atttgttctaattctcatcaatgacaattacaacatgttatggccta 35611568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 27194351 - 27194395
Alignment:
Q  7 atttgttctaattaccatcaatgacaattacaacatgttctggcct 52  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||    
T  27194351 atttgttctaatt-ctatcaatgacaattacaacatgttctggcct 27194395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 27844165 - 27844209
Alignment:
Q  7 atttgttctaattaccatcaatgacaattacaacatgttctggcct 52  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||    
T  27844165 atttgttctaatt-ctatcaatgacaattacaacatgttctggcct 27844209  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 39441423 - 39441378
Alignment:
Q  7 atttgttctaattaccatcaatgacaattacaacatgttctggcct 52  Q
    |||||||||||||  ||||||||||||||||| |||||| ||||||    
T  39441423 atttgttctaattctcatcaatgacaattacagcatgttatggcct 39441378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0356 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 15388 - 15343
Alignment:
Q  7 atttgttctaattaccatcaatgacaattacaacatgttctggcct 52  Q
    |||||||||||||| |||| ||||||||||||||||||| ||||||    
T  15388 atttgttctaattatcatcgatgacaattacaacatgttatggcct 15343  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 16015376 - 16015331
Alignment:
Q  7 atttgttctaattaccatcaatgacaattacaacatgttctggcct 52  Q
    |||||||||||||  |||||||||||||||||||||||||| ||||    
T  16015376 atttgttctaattctcatcaatgacaattacaacatgttctagcct 16015331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 18344638 - 18344682
Alignment:
Q  7 atttgttctaattaccatcaatgacaattacaacatgttctggcct 52  Q
    ||||||||||||| | ||||||||||||||||||||||| ||||||    
T  18344638 atttgttctaatt-ctatcaatgacaattacaacatgttttggcct 18344682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 617930 - 617886
Alignment:
Q  7 atttgttctaattaccatcaatgacaattacaacatgttctggcct 52  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||    
T  617930 atttgttctaatt-ctatcaatgacaattacaacatgttctggcct 617886  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 2331046 - 2331091
Alignment:
Q  7 atttgttctaattaccatcaatgacaattacaacatgttctggcct 52  Q
    |||||||||||||  |||||||||||||||||||||||| ||||||    
T  2331046 atttgttctaattctcatcaatgacaattacaacatgttttggcct 2331091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 48233891 - 48233935
Alignment:
Q  7 atttgttctaattaccatcaatgacaattacaacatgttctggcct 52  Q
    ||||||||||||| | ||||||||||||||||||||||| ||||||    
T  48233891 atttgttctaatt-ctatcaatgacaattacaacatgttatggcct 48233935  T

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