View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7645_low_2 (Length: 665)

Name: NF7645_low_2
Description: NF7645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7645_low_2
NF7645_low_2
[»] chr4 (9 HSPs)
chr4 (11-643)||(35106972-35107632)
chr4 (11-217)||(35072682-35072888)
chr4 (13-217)||(35097796-35098000)
chr4 (13-217)||(35098085-35098289)
chr4 (21-216)||(36940478-36940673)
chr4 (13-164)||(36296508-36296659)
chr4 (21-176)||(36961351-36961507)
chr4 (103-218)||(36935858-36935974)
chr4 (92-140)||(36953720-36953768)
[»] chr6 (2 HSPs)
chr6 (11-219)||(24040736-24040944)
chr6 (13-217)||(24014181-24014385)
[»] chr5 (1 HSPs)
chr5 (82-176)||(34919141-34919235)


Alignment Details
Target: chr4 (Bit Score: 502; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 11 - 643
Target Start/End: Original strand, 35106972 - 35107632
Alignment:
Q  11 gtgagaagaacgttgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgc 110  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35106972 gtgagaggaactttgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgc 35107071  T
Q  111 gaaaatggatcaagtgaaagctgcaatggagaatggtgttctcactgtcactgtccctaaggaagagatcaagaagcctgaaatcaaagccattgaaatc 210  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  35107072 gaaaatggatcaagtgaaagctgctatggagaatggtgttctcgctgtcactgtccctaaggaagagatcaagaagcctgaagtcaaagccattgaaatc 35107171  T
Q  211 tctggttaa-ctcagaacaagctttgttactcgtcttttgttt----------------------gttttgtaatgcttactttgtttgtgatgtctgtg 287  Q
    ||||||||| |||||||||||||||||||||||||||||||||                      |||||||||||||||||||||||||||||||||||    
T  35107172 tctggttaaactcagaacaagctttgttactcgtcttttgtttaattcgtgtgctttttttggttgttttgtaatgcttactttgtttgtgatgtctgtg 35107271  T
Q  288 caagaaatctatgatg-----atgtaatatgtgagatgttaatccataaatgaataagtaaacagttgttattcttcttggtgttatattagtatttgta 382  Q
    |||| |||   || ||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35107272 caaggaatacttggtgttataatgtaatatgtgagatgttaatccataaatgaataagtaaacagttgttattcttcttggtgttatattagtatttgta 35107371  T
Q  383 ttccaaggaatacttggtgttatacatagttggccttatactttgtaaaccattttcaagacagacttttaatgagctcaatggcagatgacattggtac 482  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  35107372 ttccaaggaatacttggtgttatacttagttggccttatactttgtaaaccattttcaagacagacttttaatgagctcaatggcagatgaaattggtac 35107471  T
Q  483 tgtaactaattgtcattaaaattatgtattcctcgctttgtttcatatgagagtttgaaagtacgtttctcagccaaatggcttcgactatagcagcttt 582  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  35107472 tgtaactgattgtcattaaaattatgtattcctcgctttgtttcatatgagagtttgaaagtacgtttctcagccaaatggctttgactatagcagcttt 35107571  T
Q  583 aacttcatattcgatttcaattgtgttttgattcactacatcttgccttcttgcttctcta 643  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  35107572 aacttcatattcgatttcaattatgttttgattcactacatcttgccttcttgcttctcta 35107632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 11 - 217
Target Start/End: Complemental strand, 35072888 - 35072682
Alignment:
Q  11 gtgagaagaacgttgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgc 110  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  35072888 gtgagaggaacattgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagataaccagagaatgc 35072789  T
Q  111 gaaaatggatcaagtgaaagctgcaatggagaatggtgttctcactgtcactgtccctaaggaagagatcaagaagcctgaaatcaaagccattgaaatc 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| || || |||||  | ||||| |||||  | ||  |||| ||||||    
T  35072788 gaaaatggatcaagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagaagttaagaaacctgatgttaagtccatcgaaatc 35072689  T
Q  211 tctggtt 217  Q
    |||||||    
T  35072688 tctggtt 35072682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 13 - 217
Target Start/End: Original strand, 35097796 - 35098000
Alignment:
Q  13 gagaagaacgttgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcga 112  Q
    |||| ||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||    
T  35097796 gagaggaatgttgagaaagaagataagaacgatcaatggcatcgtgtggagcgtagcagtgggaaattcatgaggaggttcagattgcctgagaatgcga 35097895  T
Q  113 aaatggatcaagtgaaagctgcaatggagaatggtgttctcactgtcactgtccctaaggaagagatcaagaagcctgaaatcaaagccattgaaatctc 212  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||| || || ||||||||||||||||||||  | ||  |||||||||||||    
T  35097896 aaatggaccaagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagagatcaagaagcctgatgttaagtccattgaaatctc 35097995  T
Q  213 tggtt 217  Q
    |||||    
T  35097996 tggtt 35098000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 13 - 217
Target Start/End: Original strand, 35098085 - 35098289
Alignment:
Q  13 gagaagaacgttgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcga 112  Q
    |||| ||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||    
T  35098085 gagaggaatgttgagaaagaagataagaacgatcaatggcatcgtgtggagcgtagcagtgggaaattcatgaggaggttcagattgcctgagaatgcga 35098184  T
Q  113 aaatggatcaagtgaaagctgcaatggagaatggtgttctcactgtcactgtccctaaggaagagatcaagaagcctgaaatcaaagccattgaaatctc 212  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||| || || ||||||||||||||||||||  | ||  |||||||||||||    
T  35098185 aaatggaccaagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagagatcaagaagcctgatgttaagtccattgaaatctc 35098284  T
Q  213 tggtt 217  Q
    |||||    
T  35098285 tggtt 35098289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 21 - 216
Target Start/End: Complemental strand, 36940673 - 36940478
Alignment:
Q  21 cgttgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggat 120  Q
    |||||| |||||||||||||| |||||||||||||  ||||||||||||||||| || ||||||||||| || ||||| || |||||||| |||||||||    
T  36940673 cgttgagaaagaagataagaacgatcaatggcatcccgtggagcgtagcagtgggaagttcatgaggagattaagattgcctgagaatgctaaaatggat 36940574  T
Q  121 caagtgaaagctgcaatggagaatggtgttctcactgtcactgtccctaaggaagagatcaagaagcctgaaatcaaagccattgaaatctctggt 216  Q
    ||| ||||||||||||||||||||||  |||||||||||||||| |||||  ||||||||||||| | |||| | ||| ||||||| |||||||||    
T  36940573 caaatgaaagctgcaatggagaatggcattctcactgtcactgtgcctaaaaaagagatcaagaatcatgaagttaaaaccattgatatctctggt 36940478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 13 - 164
Target Start/End: Complemental strand, 36296659 - 36296508
Alignment:
Q  13 gagaagaacgttgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcga 112  Q
    |||| ||||||||| |||||||| |||||  | ||||||||||| |||||||||||||||||||| || ||||||||||| ||||| || || ||||| |    
T  36296659 gagaggaacgttgagaaagaagacaagaacaaccaatggcatcgcgtggagcgtagcagtggaaagtttatgaggaggttcagattgcccgaaaatgcca 36296560  T
Q  113 aaatggatcaagtgaaagctgcaatggagaatggtgttctcactgtcactgt 164  Q
    | |||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  36296559 agatggatcaggtgaaagctgcaatggagaatggtgttctcactgtaactgt 36296508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 21 - 176
Target Start/End: Original strand, 36961351 - 36961507
Alignment:
Q  21 cgttgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggat 120  Q
    |||||| ||||||||||||||  || |||||||| | ||||||| ||||||||| ||||||||||||| |||||||||  |||||||||| || ||||||    
T  36961351 cgttgagaaagaagataagaacaatgaatggcattgcgtggagcttagcagtgggaaattcatgaggaagtttagattggcagagaatgctaagatggat 36961450  T
Q  121 caagtgaaagc-tgcaatggagaatggtgttctcactgtcactgtccctaaggaaga 176  Q
    || ||||| ||   ||  ||||||||||||||||||||| ||| | |||||||||||    
T  36961451 caggtgaatgcaaacatgggagaatggtgttctcactgtaactattcctaaggaaga 36961507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 103 - 218
Target Start/End: Complemental strand, 36935974 - 36935858
Alignment:
Q  103 gagaatgcgaaaatggatcaagtgaaagctgcaa-tggagaatggtgttctcactgtcactgtccctaaggaagagatcaagaagcctgaaatcaaagcc 201  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| || || ||  | |||||| | |||||||||||| | ||  ||    
T  36935974 gagaatgctaaaatggatcaagtgaaagctgcaattggagaatggtgttctcactgttaccgtgccacaagaagaggttaagaagcctgaagtgaagacc 36935875  T
Q  202 attgaaatctctggtta 218  Q
    ||||| |||||||||||    
T  36935874 attgatatctctggtta 36935858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 36953768 - 36953720
Alignment:
Q  92 ttagattaccagagaatgcgaaaatggatcaagtgaaagctgcaatgga 140  Q
    ||||||| || || ||||| |||| ||||||||||||||||||||||||    
T  36953768 ttagattgcctgacaatgctaaaacggatcaagtgaaagctgcaatgga 36953720  T

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Target: chr6 (Bit Score: 165; Significance: 7e-88; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 11 - 219
Target Start/End: Complemental strand, 24040944 - 24040736
Alignment:
Q  11 gtgagaagaacgttgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgc 110  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24040944 gtgagaggaacgttgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgc 24040845  T
Q  111 gaaaatggatcaagtgaaagctgcaatggagaatggtgttctcactgtcactgtccctaaggaagagatcaagaagcctgaaatcaaagccattgaaatc 210  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  | ||||||||| || | ||  ||||||| |||    
T  24040844 gaaaatggatcaagtgaaagctgcaatggagaatggtattctcactgtcactgtccctaaggaagaagttaagaagcctcaagtgaagaccattgatatc 24040745  T
Q  211 tctggttaa 219  Q
    |||||||||    
T  24040744 tctggttaa 24040736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 13 - 217
Target Start/End: Complemental strand, 24014385 - 24014181
Alignment:
Q  13 gagaagaacgttgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcga 112  Q
    |||| ||| ||||| |||||||||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||| || || || || || |||||||    
T  24014385 gagaggaatgttgagaaagaagataagaacgatcaatggcatcgtgtggagcgcagcagcggaaagttcatgaggagattcaggttgcccgaaaatgcga 24014286  T
Q  113 aaatggatcaagtgaaagctgcaatggagaatggtgttctcactgtcactgtccctaaggaagagatcaagaagcctgaaatcaaagccattgaaatctc 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| || || |||||  | ||||| |||||  | ||  |||| ||||||||    
T  24014285 aaatggatcaagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagaagttaagaaacctgatgttaagtccatcgaaatctc 24014186  T
Q  213 tggtt 217  Q
    |||||    
T  24014185 tggtt 24014181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 82 - 176
Target Start/End: Original strand, 34919141 - 34919235
Alignment:
Q  82 atgaggaggtttagattaccagagaatgcgaaaatggatcaagtgaaagctgcaatggagaatggtgttctcactgtcactgtccctaaggaaga 176  Q
    |||||||||||||| || || |||||||  ||||||||||| || |||||||  ||||||||||| ||||| ||||| ||||| |||||||||||    
T  34919141 atgaggaggtttaggttgcctgagaatgttaaaatggatcaggttaaagctggtatggagaatggggttcttactgttactgttcctaaggaaga 34919235  T

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