View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7645_low_22 (Length: 242)
Name: NF7645_low_22
Description: NF7645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7645_low_22 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 56 - 242
Target Start/End: Original strand, 31669500 - 31669670
Alignment:
| Q |
56 |
attccggtattgccaaaagccatatctcattcactctcacattaatatactatcattaggtttactatcactctagaacccgaaacattcacttacacaa |
155 |
Q |
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| T |
31669500 |
attccggtattgccaaa-gccatatctcattcactctcacattaatatact---------------atcactctagaacccgaaacattcacttacacaa |
31669583 |
T |
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| Q |
156 |
cacataacaggtttttacagcatttttcacttggtaaccagttgtacatgtgtaaccggttacctaagttgttggagagtgtgaaac |
242 |
Q |
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| T |
31669584 |
cacataacaggtttttacagcatttttcacttggtaaccggttgtacatgtgtaaccggttacctaagttgttggagagtgtgaaac |
31669670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 2607084 - 2607125
Alignment:
| Q |
14 |
tcatagtgtaatcaggaaggatttgttctcagtacacctata |
55 |
Q |
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| T |
2607084 |
tcatagtgtaatcaggatggatttgttctcagtacgcctata |
2607125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 31901370 - 31901329
Alignment:
| Q |
14 |
tcatagtgtaatcaggaaggatttgttctcagtacacctata |
55 |
Q |
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| T |
31901370 |
tcatagtgtaatcaggaaggatttgttctcagtacacctata |
31901329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 25446066 - 25446022
Alignment:
| Q |
14 |
tcatagtgtaatcaggaaggatttgttctcagtacacctataatt |
58 |
Q |
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| T |
25446066 |
tcatagtgtaattaggaaggatttgttctcagtacacctataatt |
25446022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 25450629 - 25450588
Alignment:
| Q |
14 |
tcatagtgtaatcaggaaggatttgttctcagtacacctata |
55 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| |
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| T |
25450629 |
tcatagtgtaattaggaaggatttgttctcagtacacctata |
25450588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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