View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7645_low_24 (Length: 239)

Name: NF7645_low_24
Description: NF7645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7645_low_24
NF7645_low_24
[»] chr1 (12 HSPs)
chr1 (16-220)||(15009532-15009736)
chr1 (16-220)||(15030630-15030834)
chr1 (16-220)||(15023649-15023853)
chr1 (16-220)||(15000929-15001133)
chr1 (16-220)||(15015935-15016139)
chr1 (17-175)||(14534526-14534684)
chr1 (17-137)||(14502083-14502203)
chr1 (18-128)||(14524596-14524706)
chr1 (24-128)||(14480893-14480997)
chr1 (16-117)||(14465978-14466079)
chr1 (16-161)||(15035408-15035553)
chr1 (172-216)||(14503102-14503146)
[»] scaffold0400 (2 HSPs)
scaffold0400 (16-158)||(5383-5525)
scaffold0400 (18-161)||(10881-11024)
[»] scaffold0365 (2 HSPs)
scaffold0365 (16-158)||(6027-6169)
scaffold0365 (18-161)||(11524-11667)


Alignment Details
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 15009532 - 15009736
Alignment:
Q  16 aatattggactaaaaggtacgcttcagagtctcaatttttcatcacttccaaaaatccacactttagttttaacaaacaacttcttgtacggagttgttc 115  Q
    |||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15009532 aatattggactaaaaggtacacttcagagtctcaacttctcatcacttccaaaaatccacactttagttttaacaaacaacttcttgtacggagttgttc 15009631  T
Q  116 cacaccatattggagagatgtctagtctcaaaactcttaatttgtcgattaacaatctctttgggtcaatcccaccaaccataggtaatttgattaattt 215  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  15009632 cacaccaaattggagagatgtctagtctcaaaactcttaatttgtcgattaacaatctctttgggtcaatcccaccatccataggtaatttgattaattt 15009731  T
Q  216 ggata 220  Q
     ||||    
T  15009732 agata 15009736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 15030630 - 15030834
Alignment:
Q  16 aatattggactaaaaggtacgcttcagagtctcaatttttcatcacttccaaaaatccacactttagttttaacaaacaacttcttgtacggagttgttc 115  Q
    |||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15030630 aatattggactaaaaggtacacttcagagtctcaacttctcatcacttccaaaaatccacactttagttttaacaaacaacttcttgtacggagttgttc 15030729  T
Q  116 cacaccatattggagagatgtctagtctcaaaactcttaatttgtcgattaacaatctctttgggtcaatcccaccaaccataggtaatttgattaattt 215  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  15030730 cacaccaaattggagagatgtctagtctcaaaactcttaatttgtcgattaacaatctctttgggtcaatcccaccatccataggtaatttgattaattt 15030829  T
Q  216 ggata 220  Q
     ||||    
T  15030830 agata 15030834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 15023649 - 15023853
Alignment:
Q  16 aatattggactaaaaggtacgcttcagagtctcaatttttcatcacttccaaaaatccacactttagttttaacaaacaacttcttgtacggagttgttc 115  Q
    ||||||||| |||| ||||| ||||| ||||||||||| ||||||||||| ||||| ||||| ||||||||||||||||||| |||||| |||||| |||    
T  15023649 aatattggattaaacggtactcttcaaagtctcaatttctcatcacttccgaaaatacacaccttagttttaacaaacaactccttgtatggagttattc 15023748  T
Q  116 cacaccatattggagagatgtctagtctcaaaactcttaatttgtcgattaacaatctctttgggtcaatcccaccaaccataggtaatttgattaattt 215  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  15023749 cacaccatattggagagatgtctagtctgaaaactcttaatttgtcgattaacaatctctttgggtcaatcccaccatccataggtaatttgattaattt 15023848  T
Q  216 ggata 220  Q
    |||||    
T  15023849 ggata 15023853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 15000929 - 15001133
Alignment:
Q  16 aatattggactaaaaggtacgcttcagagtctcaatttttcatcacttccaaaaatccacactttagttttaacaaacaacttcttgtacggagttgttc 115  Q
    |||||||||||||||||||||||||| | ||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  15000929 aatattggactaaaaggtacgcttcaaactctcaatttctcatcacttacaaaaatccacaccttagttttaacaaacaacttcttgcacggagttgttc 15001028  T
Q  116 cacaccatattggagagatgtctagtctcaaaactcttaatttgtcgattaacaatctctttgggtcaatcccaccaaccataggtaatttgattaattt 215  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||  || ||||||||||||| ||||||||||||||||||||||    
T  15001029 cacaccatattggagagatgtctagtctaaaaactcttgatttgtcggttaacaatctcgctgagtcaatcccaccatccataggtaatttgattaattt 15001128  T
Q  216 ggata 220  Q
     ||||    
T  15001129 agata 15001133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 15015935 - 15016139
Alignment:
Q  16 aatattggactaaaaggtacgcttcagagtctcaatttttcatcacttccaaaaatccacactttagttttaacaaacaacttcttgtacggagttgttc 115  Q
    |||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||  || |||||||||| |||||||||| |||||||  ||||||    
T  15015935 aatattggactaaaaggtacacttcaaagtctcaatttctcatcacttccaaaaatccgtaccttagttttaagaaacaacttcctgtacggcattgttc 15016034  T
Q  116 cacaccatattggagagatgtctagtctcaaaactcttaatttgtcgattaacaatctctttgggtcaatcccaccaaccataggtaatttgattaattt 215  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||| ||||| |||| | ||||||||||||||||||||||    
T  15016035 cacaccatattggagagatgtctagtctaaaaactcttgatttgtcgattaacaatctttttggatcaataccactatccataggtaatttgattaattt 15016134  T
Q  216 ggata 220  Q
    |||||    
T  15016135 ggata 15016139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 14534684 - 14534526
Alignment:
Q  17 atattggactaaaaggtacgcttcagagtctcaatttttcatcacttccaaaaatccacactttagttttaacaaacaacttcttgtacggagttgttcc 116  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14534684 atattggactaaaaggtacgcttcaaagtctcaatttctcatcacttacaaaaatccacactttagttttaacaaacaacttcttgtacggagttgttcc 14534585  T
Q  117 acaccatattggagagatgtctagtctcaaaactcttaatttgtcgattaacaatctct 175  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||  ||||||||||||    
T  14534584 acaccatattggagagatgtctagtctaaaaactcttgatttgtcagttaacaatctct 14534526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 14502083 - 14502203
Alignment:
Q  17 atattggactaaaaggtacgcttcagagtctcaatttttcatcacttccaaaaatccacactttagttttaacaaacaacttcttgtacggagttgttcc 116  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||| |||||||||| ||||||||  || || |||| ||||||    
T  14502083 atattggactaaaaggtacgcttcaaagtctcaatttatcatcacttccaaaaatccgcaccttagttttaaaaaacaactcattctatggagctgttcc 14502182  T
Q  117 acaccatattggagagatgtc 137  Q
    |||||||||||||| ||||||    
T  14502183 acaccatattggagtgatgtc 14502203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 14524706 - 14524596
Alignment:
Q  18 tattggactaaaaggtacgcttcagagtctcaatttttcatcacttccaaaaatccacactttagttttaacaaacaacttcttgtacggagttgttcca 117  Q
    |||||||||||||||||| ||||| | ||||||| | |||||||||||||||||||| |  |||||||||| ||||||||  || || ||||||||||||    
T  14524706 tattggactaaaaggtacacttcaaaatctcaatatctcatcacttccaaaaatccatagcttagttttaagaaacaactcattctatggagttgttcca 14524607  T
Q  118 caccatattgg 128  Q
    |||||||||||    
T  14524606 caccatattgg 14524596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 24 - 128
Target Start/End: Original strand, 14480893 - 14480997
Alignment:
Q  24 actaaaaggtacgcttcagagtctcaatttttcatcacttccaaaaatccacactttagttttaacaaacaacttcttgtacggagttgttccacaccat 123  Q
    |||||||||||| ||||| ||||||||||| |||||||||||||||||||| |  |||||||| | |||||||||||| || |||||| ||||| |||||    
T  14480893 actaaaaggtacacttcaaagtctcaatttctcatcacttccaaaaatccaaaaattagttttgagaaacaacttcttctatggagttattccataccat 14480992  T
Q  124 attgg 128  Q
    |||||    
T  14480993 attgg 14480997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 16 - 117
Target Start/End: Original strand, 14465978 - 14466079
Alignment:
Q  16 aatattggactaaaaggtacgcttcagagtctcaatttttcatcacttccaaaaatccacactttagttttaacaaacaacttcttgtacggagttgttc 115  Q
    |||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||    |||||||| | |||||||| ||| || |||||| |||    
T  14465978 aatattggactaaaaggtacgcttcaaactctcaatttctcatcacttccaaaaatccaagaattagttttgagaaacaactccttctatggagttattc 14466077  T
Q  116 ca 117  Q
    ||    
T  14466078 ca 14466079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 16 - 161
Target Start/End: Original strand, 15035408 - 15035553
Alignment:
Q  16 aatattggactaaaaggtacgcttcagagtctcaatttttcatcacttccaaaaatccacactttagttttaacaaacaacttcttgtacggagttgttc 115  Q
    |||||||||||||||||||||||||| | ||||||||| ||||||||||| ||| |  | | |||||||||||  | ||||| ||| ||||| || ||||    
T  15035408 aatattggactaaaaggtacgcttcaaactctcaatttctcatcacttccgaaattgaaaagtttagttttaagcagcaactccttctacggtgtagttc 15035507  T
Q  116 cacaccatattggagagatgtctagtctcaaaactcttaatttgtc 161  Q
    ||||||||||||| |  ||||| | |||  |||||||| |||||||    
T  15035508 cacaccatattggtgtaatgtccaatctagaaactcttgatttgtc 15035553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 14503102 - 14503146
Alignment:
Q  172 ctctttgggtcaatcccaccaaccataggtaatttgattaatttg 216  Q
    |||| |||| ||||||||||| |||||||||||||| ||||||||    
T  14503102 ctctctgggccaatcccaccatccataggtaatttggttaatttg 14503146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 5383 - 5525
Alignment:
Q  16 aatattggactaaaaggtacgcttcagagtctcaatttttcatcacttccaaaaatccacactttagttttaacaaacaacttcttgtacggagttgttc 115  Q
    |||||||| |||||||||| |||||| ||||||||||| ||||||||||||||||||| ||  |||||||||| |||||| | ||| |||||||||||||    
T  5383 aatattggcctaaaaggtatgcttcaaagtctcaatttctcatcacttccaaaaatccgcatcttagttttaaaaaacaattccttttacggagttgttc 5482  T
Q  116 cacaccatattggagagatgtctagtctcaaaactcttaattt 158  Q
    | ||||||||||| | |||||| | |||  |||||||| ||||    
T  5483 ctcaccatattggggtgatgtcaaatctggaaactcttgattt 5525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 10881 - 11024
Alignment:
Q  18 tattggactaaaaggtacgcttcagagtctcaatttttcatcacttccaaaaatccacactttagttttaacaaacaacttcttgtacggagttgttcca 117  Q
    |||||||||||||||||| ||||| | ||||||| | |||||||||||||||||||| |  |||||||||| ||||||||  || |  ||||||||||||    
T  10881 tattggactaaaaggtacacttcaaaatctcaatatctcatcacttccaaaaatccatagcttagttttaagaaacaactcattctttggagttgttcca 10980  T
Q  118 caccatattggagagatgtctagtctcaaaactcttaatttgtc 161  Q
    || |||||||| |  ||||| | |||  |||||||| |||||||    
T  10981 catcatattggtgtaatgtccaatctagaaactcttgatttgtc 11024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 6027 - 6169
Alignment:
Q  16 aatattggactaaaaggtacgcttcagagtctcaatttttcatcacttccaaaaatccacactttagttttaacaaacaacttcttgtacggagttgttc 115  Q
    |||||||| |||||||||| |||||| ||||||||||| ||||||||||||||||||| ||  |||||||||| |||||| | ||| |||||||||||||    
T  6027 aatattggcctaaaaggtatgcttcaaagtctcaatttctcatcacttccaaaaatccgcatcttagttttaaaaaacaattccttttacggagttgttc 6126  T
Q  116 cacaccatattggagagatgtctagtctcaaaactcttaattt 158  Q
    | ||||||||||| | |||||| | |||  |||||||| ||||    
T  6127 ctcaccatattggggtgatgtcaaatctggaaactcttgattt 6169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 11524 - 11667
Alignment:
Q  18 tattggactaaaaggtacgcttcagagtctcaatttttcatcacttccaaaaatccacactttagttttaacaaacaacttcttgtacggagttgttcca 117  Q
    |||||||||||||||||| ||||| | ||||||| | |||||||||||||||||||| |  |||||||||| ||||||||  || |  ||||||||||||    
T  11524 tattggactaaaaggtacacttcaaaatctcaatatctcatcacttccaaaaatccatagcttagttttaagaaacaactcattctttggagttgttcca 11623  T
Q  118 caccatattggagagatgtctagtctcaaaactcttaatttgtc 161  Q
    || |||||||| |  ||||| | |||  |||||||| |||||||    
T  11624 catcatattggtgtaatgtccaatctagaaactcttgatttgtc 11667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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