View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7645_low_3 (Length: 622)
Name: NF7645_low_3
Description: NF7645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7645_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 452; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 19 - 522
Target Start/End: Complemental strand, 4242923 - 4242420
Alignment:
| Q |
19 |
actgatttcaccagccttgaatttccttctttccaatcccatatataaatgaaaataagttgtcatttaattagtcatagaatcagatgtttttctacca |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4242923 |
actgatttcaccagccttgaatttccttctttccaatcccatatataaatgaaaataagttgtcatttaattagtcatagaatcagatgtttttctacca |
4242824 |
T |
|
| Q |
119 |
ggaagctcttcccattgtagtccctttacctccagtactcttgctttatttgcatccactgctactacaataatagatccatcacaacgccaatagcaaa |
218 |
Q |
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|||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4242823 |
ggaagctcttcccattatagtcactttacctccagtactcttgctttgtttgcatccactgctactacaataatagatccatcacaacaccaatagcaaa |
4242724 |
T |
|
| Q |
219 |
aactactctagttttctccataaggtgccatcttgtatcacatccttcttcattggtgtgaacctttcttcttgtctttgttccagatgtgtatacttta |
318 |
Q |
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|||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
4242723 |
aactactctagttttctccataaggtcccatcttgtttcacatccttcttcattggtgtgaacctttcttcttgtccttgttccagatgtgtatacttta |
4242624 |
T |
|
| Q |
319 |
gaaggcctatgaaaatgtggcggacctgagcaaatttgctaactcctgcattattttacagaacaatttcacatatgttttgcattatatgtaaaggaac |
418 |
Q |
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||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
4242623 |
gaaggcctatgaaaaagtggcggacctgagcaactttgctaactcctgcattattttacagaacaatttcacatatattttgcattatatgtaaaggaac |
4242524 |
T |
|
| Q |
419 |
gcttctggctagtttgagatttatgcatatcacaatataataccagggtggaaatagtgcaataaggaattcaaaatgttacattcatgaaagttacaaa |
518 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
4242523 |
tcttctggctagtttgagatttatacatatcacaatataataccagggtggaaatagtgcaataaggaattcaaaatgttacattcatgaaagttacgaa |
4242424 |
T |
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| Q |
519 |
tttc |
522 |
Q |
| |
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|||| |
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| T |
4242423 |
tttc |
4242420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 243 - 387
Target Start/End: Complemental strand, 4235687 - 4235542
Alignment:
| Q |
243 |
gtgccatcttgtatcacatccttcttcattggtgtgaacctttcttcttgtctttgttccagatgtgtatactttagaaggcctatgaaaat-gtggcgg |
341 |
Q |
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|||||||||||| ||| ||||||||||| |||||||||||||||||| || ||||||| | ||||||| |||| ||||||||||||||| |||||| |
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| T |
4235687 |
gtgccatcttgtttcaattccttcttcatcagtgtgaacctttcttcttttccttgttcctgttgtgtatgcttttgaaggcctatgaaaaaagtggcga |
4235588 |
T |
|
| Q |
342 |
acctgagcaaatttgctaactcctgcattattttacagaacaattt |
387 |
Q |
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| ||| || |||||||||||||||| |||||||| |||||||| |
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| T |
4235587 |
atttgaccatctttgctaactcctgcaatattttacgtaacaattt |
4235542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 243 - 333
Target Start/End: Original strand, 28948905 - 28948995
Alignment:
| Q |
243 |
gtgccatcttgtatcacatccttcttcattggtgtgaacctttcttcttgtctttgttccagatgtgtatactttagaaggcctatgaaaa |
333 |
Q |
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|||||||||||| |||| ||||||||||| || ||||||||||||||| || ||||||| | ||||||| ||||||| ||||| |||||| |
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| T |
28948905 |
gtgccatcttgtttcacttccttcttcatcagtttgaacctttcttcttttccttgttcctgttgtgtatgctttagatggcctgtgaaaa |
28948995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 243 - 332
Target Start/End: Original strand, 34830050 - 34830139
Alignment:
| Q |
243 |
gtgccatcttgtatcacatccttcttcattggtgtgaacctttcttcttgtctttgttccagatgtgtatactttagaaggcctatgaaa |
332 |
Q |
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|||||||||||| |||| ||||||||||| || ||||||||||||||| || ||||||| | ||||||| ||||||| ||||| ||||| |
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| T |
34830050 |
gtgccatcttgtttcacttccttcttcatcagtttgaacctttcttcttttccttgttcctgttgtgtatgctttagatggcctgtgaaa |
34830139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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