View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7645_low_5 (Length: 557)
Name: NF7645_low_5
Description: NF7645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7645_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 30 - 541
Target Start/End: Original strand, 30289321 - 30289834
Alignment:
| Q |
30 |
tacgaaacagtaattgattgtagatttgatcttgacttttatggatgnnnnnnnnn-tcaatttggagaataagatttcattttgtgttaaa--tttgaa |
126 |
Q |
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|||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||| |
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| T |
30289321 |
tacgaaacagtaattggtcgtagatttgatcttgacttttatggatgaaaaaaaaaatcaatttggagaa-aagatttcattttgtgttaaaagtttgaa |
30289419 |
T |
|
| Q |
127 |
actgaggttggtcattaataaaggacgatggaattttcaatctataacacagtaacaaaaaacatgttagaacatgataatatcatcatcatgttagaag |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30289420 |
actgaggttggtcattaataaaggacgatggaattttcaatctataacacagtaacaaaaaacatgttagaacatgataatatcatcatcatgttagaag |
30289519 |
T |
|
| Q |
227 |
agtaatatgtttcaaaagattacataaacaatgtaaacaaataacaagggaatgggtagcccccgttttctatacattcttcttcaagagcacatcagac |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| || |
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| T |
30289520 |
agtaatatgtttcaaaagattacataaacaatgtaaacaaataacaagggaatgagtagcccccgttttctatacatccttcttcaagagcacatcaaac |
30289619 |
T |
|
| Q |
327 |
ttcatttctctttccaccaaagaaatactcgactagctttttcaagttagagatttcttcctcatcaacatcttcaaaatcggagctttattcatcttcc |
426 |
Q |
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||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30289620 |
ttcatttctctttccactaaaaaaatactcgactagctttttcaagttagagatttcttcctcatcaacatcttcaaaatcggagctttattcatcttcc |
30289719 |
T |
|
| Q |
427 |
acgacaattgcattacaatactattttggattgtcctgttcactatcagatacatcgagggggctttcaatctcgttgaataatactaaaaaatctacag |
526 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
30289720 |
acgacaattgtattacaatactattttggattgtcctgttcactatcagatacatcgagggggttttcaatctcgttgaataatactgaaaaatctacag |
30289819 |
T |
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| Q |
527 |
actctgcgaagttcg |
541 |
Q |
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|||||| |||||||| |
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| T |
30289820 |
actctgtgaagttcg |
30289834 |
T |
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