View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7645_low_6 (Length: 463)
Name: NF7645_low_6
Description: NF7645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7645_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 141; Significance: 9e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 24377529 - 24377326
Alignment:
| Q |
1 |
ttattcatctttatccaagcatatatatataactcaatggaagcttgagtttggtgcatatgatagaaaatcctgagctacaataataaagacaaattaa |
100 |
Q |
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| T |
24377529 |
ttattcatctttatccaagcatatata----actcaatggaagtttgagtttgctgcatatgatagaaaatcctgagctacaataataaagacaaattaa |
24377434 |
T |
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| Q |
101 |
cgagcaacgatgaagctcacaatgcaaatgatcttagttgcaatataaaattataggctatagta-----------gctaggatccttttcgagcaacga |
189 |
Q |
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| T |
24377433 |
cgagcaacgatgaagctcacaatgcaaatgatcttagttgcaatataaaattataggctatagtaattatataggtgttaggatccttttcgagcaacga |
24377334 |
T |
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| Q |
190 |
tgaagatc |
197 |
Q |
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|||||||| |
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| T |
24377333 |
tgaagatc |
24377326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 291 - 458
Target Start/End: Complemental strand, 24377176 - 24377002
Alignment:
| Q |
291 |
tgagaagaggtgggtggagtgggtacctgaa-----gtactgaaccgggtaaggatcccgcaccgagtgtggagattctaaatccgactgagttgg---g |
382 |
Q |
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||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
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| T |
24377176 |
tgagaagaggtgggtggagtggggacctgaactactttactgaaccgggtaaggat-ccgcaccgagtgtggagattctaaatccgactgagttgggttg |
24377078 |
T |
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| Q |
383 |
atgttatatactcaactttcaaaggttgtttagccattgccgccgattattccgtgcttttttgtttcttctcact |
458 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||| |
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| T |
24377077 |
ttgttatatactccactttcaaaggttgtttagccattgccgccgattattccgtgcttttctgtttattttcact |
24377002 |
T |
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