View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7645_low_7 (Length: 397)

Name: NF7645_low_7
Description: NF7645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7645_low_7
NF7645_low_7
[»] chr3 (24 HSPs)
chr3 (70-378)||(40795823-40796132)
chr3 (1-134)||(29284381-29284514)
chr3 (19-84)||(42243450-42243515)
chr3 (12-68)||(2490361-2490417)
chr3 (12-84)||(20087053-20087125)
chr3 (1-84)||(39655233-39655316)
chr3 (4-62)||(19111782-19111840)
chr3 (1-103)||(22535782-22535884)
chr3 (12-84)||(43582633-43582705)
chr3 (12-83)||(34119712-34119783)
chr3 (1-84)||(48390777-48390860)
chr3 (17-84)||(54317205-54317272)
chr3 (22-84)||(3414497-3414559)
chr3 (17-107)||(10043219-10043309)
chr3 (17-86)||(4016002-4016071)
chr3 (17-77)||(4553251-4553311)
chr3 (17-84)||(4557265-4557332)
chr3 (17-84)||(34026015-34026082)
chr3 (17-84)||(34154475-34154542)
chr3 (17-100)||(38347627-38347710)
chr3 (1-47)||(40796135-40796180)
chr3 (17-83)||(52198216-52198282)
chr3 (18-83)||(27252626-27252691)
chr3 (12-84)||(6738365-6738437)
[»] chr4 (33 HSPs)
chr4 (1-134)||(30673012-30673145)
chr4 (4-134)||(41914907-41915037)
chr4 (3-86)||(25941191-25941274)
chr4 (1-81)||(43309534-43309614)
chr4 (2-134)||(45065301-45065433)
chr4 (12-82)||(10302146-10302216)
chr4 (1-134)||(1866460-1866593)
chr4 (12-84)||(31752518-31752590)
chr4 (20-96)||(39086227-39086303)
chr4 (1-132)||(15733439-15733570)
chr4 (4-134)||(31415842-31415972)
chr4 (17-86)||(1724229-1724297)
chr4 (12-80)||(12505505-12505574)
chr4 (2-86)||(6481994-6482078)
chr4 (4-84)||(19883017-19883097)
chr4 (1-84)||(11028124-11028207)
chr4 (1-68)||(14605902-14605969)
chr4 (17-131)||(8843719-8843833)
chr4 (17-131)||(8856683-8856797)
chr4 (1-134)||(7334108-7334240)
chr4 (1-134)||(18423641-18423774)
chr4 (48-108)||(30266279-30266339)
chr4 (48-108)||(30285849-30285909)
chr4 (12-84)||(37349174-37349246)
chr4 (3-41)||(11173026-11173064)
chr4 (3-41)||(21544632-21544670)
chr4 (12-62)||(39375340-39375390)
chr4 (77-134)||(11173069-11173126)
chr4 (31-72)||(35304489-35304530)
chr4 (5-66)||(47103793-47103854)
chr4 (12-84)||(15987223-15987295)
chr4 (1-41)||(29527863-29527903)
chr4 (2-130)||(43553498-43553625)
[»] chr8 (21 HSPs)
chr8 (1-108)||(15173816-15173923)
chr8 (3-134)||(15068498-15068629)
chr8 (3-83)||(27777159-27777239)
chr8 (1-84)||(5858612-5858695)
chr8 (12-84)||(14155588-14155660)
chr8 (3-82)||(10297505-10297584)
chr8 (2-84)||(27932459-27932541)
chr8 (50-108)||(41188668-41188726)
chr8 (3-99)||(39445521-39445617)
chr8 (17-84)||(2075794-2075861)
chr8 (1-84)||(20399637-20399720)
chr8 (17-84)||(29108782-29108849)
chr8 (13-80)||(30481385-30481452)
chr8 (1-82)||(27056517-27056598)
chr8 (7-135)||(2183515-2183643)
chr8 (3-83)||(37960923-37961003)
chr8 (17-84)||(14687460-14687527)
chr8 (22-84)||(1012684-1012746)
chr8 (17-90)||(32392340-32392413)
chr8 (12-84)||(34139503-34139574)
chr8 (12-84)||(43113586-43113658)
[»] chr5 (23 HSPs)
chr5 (4-134)||(2681264-2681394)
chr5 (1-134)||(28568932-28569065)
chr5 (14-134)||(12915531-12915650)
chr5 (1-84)||(4583164-4583247)
chr5 (12-74)||(39422402-39422464)
chr5 (4-108)||(23044928-23045032)
chr5 (1-84)||(4920871-4920954)
chr5 (12-75)||(6155890-6155953)
chr5 (12-85)||(6092489-6092562)
chr5 (12-136)||(40187566-40187690)
chr5 (1-84)||(33727962-33728045)
chr5 (17-83)||(16311255-16311321)
chr5 (12-66)||(43523804-43523858)
chr5 (18-83)||(17853255-17853320)
chr5 (17-74)||(38972983-38973040)
chr5 (1-84)||(15890251-15890334)
chr5 (49-132)||(34259336-34259419)
chr5 (12-66)||(18116496-18116550)
chr5 (17-58)||(27900388-27900429)
chr5 (1-41)||(12712561-12712601)
chr5 (1-41)||(12773825-12773865)
chr5 (2-86)||(29245910-29245994)
chr5 (46-82)||(42417279-42417315)
[»] chr1 (26 HSPs)
chr1 (1-124)||(16237224-16237347)
chr1 (17-81)||(34085297-34085361)
chr1 (1-72)||(33293503-33293574)
chr1 (1-134)||(49250683-49250816)
chr1 (12-107)||(2514814-2514910)
chr1 (1-85)||(10778526-10778610)
chr1 (1-85)||(24710893-24710977)
chr1 (1-84)||(51421904-51421987)
chr1 (1-85)||(5181085-5181169)
chr1 (12-84)||(13798295-13798367)
chr1 (3-83)||(19572473-19572553)
chr1 (17-97)||(27867265-27867345)
chr1 (12-134)||(24236671-24236793)
chr1 (17-86)||(13020655-13020724)
chr1 (3-84)||(34611121-34611202)
chr1 (1-86)||(44615433-44615518)
chr1 (1-86)||(44793051-44793136)
chr1 (12-84)||(9982850-9982922)
chr1 (1-85)||(13692675-13692759)
chr1 (1-84)||(23968625-23968708)
chr1 (17-132)||(29871198-29871312)
chr1 (2-84)||(12495057-12495139)
chr1 (12-84)||(17135004-17135076)
chr1 (17-85)||(18354039-18354107)
chr1 (12-56)||(34673270-34673314)
chr1 (1-81)||(41476915-41476995)
[»] chr6 (21 HSPs)
chr6 (22-86)||(29341322-29341386)
chr6 (3-96)||(9458710-9458803)
chr6 (1-134)||(18908938-18909071)
chr6 (1-84)||(5863343-5863426)
chr6 (1-84)||(32853889-32853972)
chr6 (1-134)||(20610892-20611025)
chr6 (1-134)||(27534729-27534862)
chr6 (1-85)||(27738817-27738901)
chr6 (1-84)||(32532585-32532668)
chr6 (48-134)||(24225796-24225882)
chr6 (1-86)||(9442475-9442559)
chr6 (4-133)||(17546814-17546942)
chr6 (31-84)||(30816333-30816386)
chr6 (12-84)||(15498380-15498452)
chr6 (46-134)||(29199807-29199895)
chr6 (1-84)||(2367371-2367454)
chr6 (67-129)||(34345926-34345988)
chr6 (17-86)||(256450-256519)
chr6 (2-35)||(7978595-7978628)
chr6 (1-53)||(28079687-28079739)
chr6 (1-41)||(29199888-29199928)
[»] chr7 (32 HSPs)
chr7 (1-96)||(42907989-42908084)
chr7 (1-135)||(27063188-27063322)
chr7 (4-84)||(37103087-37103167)
chr7 (1-66)||(29014930-29014995)
chr7 (1-66)||(22973438-22973503)
chr7 (2-134)||(30839043-30839176)
chr7 (1-134)||(39317045-39317178)
chr7 (1-62)||(45380157-45380218)
chr7 (24-135)||(17851925-17852036)
chr7 (12-134)||(31426069-31426192)
chr7 (1-135)||(37218055-37218189)
chr7 (1-66)||(18684024-18684089)
chr7 (1-134)||(24753214-24753346)
chr7 (12-84)||(10072527-10072599)
chr7 (15-131)||(29157415-29157531)
chr7 (17-84)||(38139752-38139819)
chr7 (17-84)||(43507511-43507578)
chr7 (17-82)||(8906551-8906616)
chr7 (1-86)||(12980427-12980512)
chr7 (17-90)||(27896429-27896502)
chr7 (12-64)||(2472044-2472096)
chr7 (12-84)||(44658427-44658499)
chr7 (1-84)||(18125188-18125271)
chr7 (17-132)||(37195921-37196036)
chr7 (1-72)||(44845107-44845178)
chr7 (1-84)||(45885725-45885808)
chr7 (1-66)||(32546242-32546310)
chr7 (1-74)||(3157133-3157206)
chr7 (17-86)||(4101608-4101677)
chr7 (17-86)||(38152953-38153021)
chr7 (18-83)||(44985879-44985944)
chr7 (12-84)||(37579322-37579394)
[»] scaffold0013 (2 HSPs)
scaffold0013 (1-105)||(128059-128164)
scaffold0013 (1-82)||(105431-105512)
[»] chr2 (22 HSPs)
chr2 (12-84)||(19104797-19104869)
chr2 (1-63)||(38342500-38342562)
chr2 (1-134)||(4427970-4428103)
chr2 (6-63)||(30978976-30979033)
chr2 (17-134)||(31942095-31942212)
chr2 (1-134)||(37106738-37106871)
chr2 (31-134)||(26755816-26755919)
chr2 (13-86)||(7314606-7314679)
chr2 (17-134)||(12341662-12341779)
chr2 (13-82)||(24051586-24051655)
chr2 (1-86)||(37472717-37472802)
chr2 (1-84)||(24414092-24414175)
chr2 (17-84)||(44746069-44746136)
chr2 (48-134)||(6027811-6027897)
chr2 (12-133)||(18106029-18106151)
chr2 (1-134)||(44057929-44058061)
chr2 (1-100)||(3547212-3547305)
chr2 (3-62)||(10212454-10212513)
chr2 (38-113)||(42102615-42102690)
chr2 (1-137)||(8915845-8915980)
chr2 (1-84)||(12193787-12193870)
chr2 (2-46)||(22900841-22900885)
[»] scaffold0184 (1 HSPs)
scaffold0184 (1-68)||(3014-3081)
[»] scaffold0157 (1 HSPs)
scaffold0157 (12-80)||(14903-14972)
[»] scaffold0005 (1 HSPs)
scaffold0005 (1-68)||(211409-211476)
[»] scaffold0036 (1 HSPs)
scaffold0036 (1-57)||(33438-33494)
[»] scaffold0014 (1 HSPs)
scaffold0014 (22-130)||(14098-14206)


Alignment Details
Target: chr3 (Bit Score: 163; Significance: 6e-87; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 70 - 378
Target Start/End: Complemental strand, 40796132 - 40795823
Alignment:
Q  70 aaacccatcaaattgaggttgttttggacggatacccataagcatgagttttgttgtcatgcctatt--ttagagctaattaagtttacgaaccaaccat 167  Q
    ||||| ||||||| || |||| ||||||||  || ||||| ||||||||||||||| ||| |||| |  |||||||||||||||||||||||||||||||    
T  40796132 aaaccaatcaaatcgaagttggtttggacgagtatccataggcatgagttttgttgccatacctactatttagagctaattaagtttacgaaccaaccat 40796033  T
Q  168 attaaccttgtttgcannnnnnnn-gttttaaaatactcaacggtgaatcaatctctctccccctctctcgcttaaattgtaatttataaaataaatgtt 266  Q
    |||| |||||||||||         ||||||||||||||||||||||||||||||| | ||| |||||| |||||| |||||||||||||||||||||||    
T  40796032 attagccttgtttgcatttttttttgttttaaaatactcaacggtgaatcaatctccc-ccctctctctggcttaacttgtaatttataaaataaatgtt 40795934  T
Q  267 tgcattgttttcaaattgaatgttgcatttaccttatttgatcatgcctttaatgtggttgaaaaagatcaccgaatnnnnnnnttctaggaatattgag 366  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||    
T  40795933 tgcattgttttcaaagtgaatgttgcatttaccttgtttgatcatgcctttaatgtggttgaaaaagatcaccgaat-aaaaaattctaggaatattgag 40795835  T
Q  367 agtacagttaat 378  Q
    ||||||||||||    
T  40795834 agtacagttaat 40795823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 29284381 - 29284514
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgaggttgttttggacgg 100  Q
    ||||||| || |||| ||| || ||||||||||||||| || |||| ||||||||| ||||| |||||||||||| |||||||| | ||| || || |||    
T  29284381 ccgtcccatacccgtgtttcgagatcgggaaaaacccatacccatacccaaacccagtcaaaacggagaaaacccgtcaaattgggtttggttcgggcgg 29284480  T
Q  101 atacccataagcatgagttttgttgtcatgccta 134  Q
     || |||   | ||||||||||||| ||||||||    
T  29284481 gtaaccacgggtatgagttttgttgccatgccta 29284514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 42243450 - 42243515
Alignment:
Q  19 ttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattg 84  Q
    ||||||||||||||||||||||| |||| ||||||||| ||||| ||| |||||||| ||||||||    
T  42243450 ttgaaatcgggaaaaacccaaactcatacccaaacccagtcaaaccggggaaaacccgtcaaattg 42243515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 2490361 - 2490417
Alignment:
Q  12 ccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggag 68  Q
    |||||||||||||||||| ||||| ||||| |||||||||||||| |||||||||||    
T  2490361 ccgtattttgaaatcggggaaaactcaaacccatatccaaacccagtcaaatcggag 2490417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 20087053 - 20087125
Alignment:
Q  12 ccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattg 84  Q
    |||| ||||||||||||| |||||||| || |||||||||||||| ||||| ||||||||| || ||||||||    
T  20087053 ccgtgttttgaaatcggggaaaacccatacccatatccaaacccagtcaaaacggagaaaatccgtcaaattg 20087125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 39655316 - 39655233
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattg 84  Q
    ||||||| || |||| |||||| |||||| |||||||| || |||| ||||||||||||||| ||| |||||||| ||||||||    
T  39655316 ccgtcccatacccgtgttttgagatcggggaaaacccatacccatacccaaacccaatcaaaacggggaaaacccgtcaaattg 39655233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 19111782 - 19111840
Alignment:
Q  4 tcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaa 62  Q
    ||||||| |||| ||||||||||||||||||| ||||| |||| |||||||||||||||    
T  19111782 tcccgtacccgtgttttgaaatcgggaaaaactcaaactcatacccaaacccaatcaaa 19111840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 22535884 - 22535782
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgaggttgttttggacgg 100  Q
    ||||||| || |||| ||||||||| ||| ||||| || || |||| ||||||||| ||||| ||| ||||||||||||||||||| ||| || || |||    
T  22535884 ccgtcccatatccgtgttttgaaattggggaaaactcatacccatacccaaacccagtcaaaacggggaaaacccatcaaattgagtttggttcgggcgg 22535785  T
Q  101 ata 103  Q
    |||    
T  22535784 ata 22535782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 43582633 - 43582705
Alignment:
Q  12 ccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattg 84  Q
    |||| ||||||||||||| ||||| || |||||||  |||||||| | ||| |||||||||||||||||||||    
T  43582633 ccgtgttttgaaatcggggaaaactcatacacatactcaaacccagtaaaaacggagaaaacccatcaaattg 43582705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 34119712 - 34119783
Alignment:
Q  12 ccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaatt 83  Q
    |||| |||| |||||||||||||| ||||| |||| |||||||||||||||  || |||||||| |||||||    
T  34119712 ccgtgttttaaaatcgggaaaaactcaaactcatacccaaacccaatcaaaatggggaaaacccgtcaaatt 34119783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 48390860 - 48390777
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattg 84  Q
    ||||||| || |||| ||||||||||||| |||||||| || |||| ||||||||| ||||| ||| ||||| || ||||||||    
T  48390860 ccgtcccatacccgtgttttgaaatcggggaaaacccatacccatacccaaacccagtcaaaacggggaaaatccgtcaaattg 48390777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 54317205 - 54317272
Alignment:
Q  17 ttttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattg 84  Q
    ||||||||||||| ||||| ||||||||||  |||||||| ||||| ||| |||||||| ||||||||    
T  54317205 ttttgaaatcggggaaaactcaaacacatactcaaacccagtcaaaacggggaaaacccgtcaaattg 54317272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 3414559 - 3414497
Alignment:
Q  22 aaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattg 84  Q
    |||||||||||||| ||||| |||| ||||||||||||||| ||| ||||||| ||| |||||    
T  3414559 aaatcgggaaaaactcaaacccataaccaaacccaatcaaagcggggaaaacctatcgaattg 3414497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 10043309 - 10043219
Alignment:
Q  17 ttttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgaggttgttttggacggataccca 107  Q
    |||||||| | || ||||||||||| |||| ||||||||| |||||  ||||||||||| |||||||| ||||| | ||| ||| ||||||    
T  10043309 ttttgaaaccagggaaaacccaaacccatacccaaacccagtcaaagtggagaaaacccgtcaaattggggttggtatggtcgggtaccca 10043219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 4016071 - 4016002
Alignment:
Q  17 ttttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgag 86  Q
    ||||||||||||| ||||||||||| |||| ||||||| | ||||| |||  ||||||| ||||||||||    
T  4016071 ttttgaaatcggggaaaacccaaacccatacccaaacctagtcaaaacgggaaaaacccgtcaaattgag 4016002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 4553251 - 4553311
Alignment:
Q  17 ttttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccat 77  Q
    ||||||||||||||||||| ||||| |||| | || |||| ||||| ||||||||||||||    
T  4553251 ttttgaaatcgggaaaaactcaaacgcatacctaagcccagtcaaagcggagaaaacccat 4553311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 4557332 - 4557265
Alignment:
Q  17 ttttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattg 84  Q
    |||||||| |||| ||||||||||| |||| ||||||||| ||||| |||  ||||||| ||||||||    
T  4557332 ttttgaaaacggggaaaacccaaacccatacccaaacccagtcaaaacgggaaaaacccgtcaaattg 4557265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 34026015 - 34026082
Alignment:
Q  17 ttttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattg 84  Q
    ||||||||||||| |||||||| || |||||||||||||| ||||| |||  |||| || ||||||||    
T  34026015 ttttgaaatcggggaaaacccatacccatatccaaacccagtcaaaacgggaaaaaaccgtcaaattg 34026082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 34154475 - 34154542
Alignment:
Q  17 ttttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattg 84  Q
    ||||||||||||| ||||| || || |||||||||||||| ||||| ||| ||||| || ||||||||    
T  34154475 ttttgaaatcggggaaaacacatacccatatccaaacccagtcaaaacggggaaaatccgtcaaattg 34154542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 38347627 - 38347710
Alignment:
Q  17 ttttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgaggttgttttggacgg 100  Q
    ||||||||||| ||||||| |||||  ||||||||| ||||| ||| ||||||||| || |||||||  ||||| || ||||||    
T  38347627 ttttgaaatcgagaaaaacgcaaacttatatccaaagccaattaaaacggagaaaatccgtcaaattagggttggttcggacgg 38347710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 40796180 - 40796135
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatat 47  Q
    |||||||||| ||||||||||||||| ||||||||| ||||||||||    
T  40796180 ccgtcccgtacccgtattttgaaatc-ggaaaaacctaaacacatat 40796135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 52198216 - 52198282
Alignment:
Q  17 ttttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaatt 83  Q
    |||||| ||||||||||||||| || |||| ||||||||| ||||| | || ||||||| |||||||    
T  52198216 ttttgagatcgggaaaaacccatacccatacccaaacccagtcaaaacagaaaaaacccgtcaaatt 52198282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 27252626 - 27252691
Alignment:
Q  18 tttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaatt 83  Q
    |||||||| ||  ||||| ||||| |||| ||||||||||||||||| || ||||||| |||||||    
T  27252626 tttgaaattggagaaaactcaaactcatacccaaacccaatcaaatccgataaaacccgtcaaatt 27252691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 6738437 - 6738365
Alignment:
Q  12 ccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattg 84  Q
    |||| ||||||||||||| |||||||| || |||| ||||||||| ||||| |||  ||||||  ||||||||    
T  6738437 ccgtgttttgaaatcggggaaaacccatacccatacccaaacccagtcaaaacgggaaaaacctgtcaaattg 6738365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 30673012 - 30673145
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgaggttgttttggacgg 100  Q
    |||||||||| ||||||||| |||||||  |||| |||||| |||| ||||||||||||||||| | |||||||| |||||||| ||||| |||||||||    
T  30673012 ccgtcccgtacccgtattttaaaatcggagaaaatccaaactcatacccaaacccaatcaaatcagggaaaacccgtcaaattgtggttggtttggacgg 30673111  T
Q  101 atacccataagcatgagttttgttgtcatgccta 134  Q
    ||||||||   |||| ||||||||||||||||||    
T  30673112 atacccatggacatgggttttgttgtcatgccta 30673145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 4 - 134
Target Start/End: Complemental strand, 41915037 - 41914907
Alignment:
Q  4 tcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgaggttgttttggacggata 103  Q
    ||||||| || ||||||||||||||| ||||||||||| |||| || |||||| ||||||||| ||||| ||||||||| | ||||| ||||| ||| ||    
T  41915037 tcccgtacccatattttgaaatcggggaaaacccaaactcatacccgaacccagtcaaatcggggaaaatccatcaaatcggggttggtttgggcggtta 41914938  T
Q  104 cccataagcatgagttttgttgtcatgccta 134  Q
    |||||  ||||| ||||||||||||||||||    
T  41914937 cccatgggcatgggttttgttgtcatgccta 41914907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 3 - 86
Target Start/End: Original strand, 25941191 - 25941274
Alignment:
Q  3 gtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgag 86  Q
    |||||||| |||| |||||||||||||||||||||||||||||  ||||||| |||||||  || |||||||||| ||||||||    
T  25941191 gtcccgtacccgtgttttgaaatcgggaaaaacccaaacacatgcccaaaccaaatcaaagtggggaaaacccattaaattgag 25941274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 43309534 - 43309614
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaa 81  Q
    ||||||| || |||| ||||||||||||||||||||||||| ||||  |||||||| ||||| |||||||||||| |||||    
T  43309534 ccgtcccatacccgtgttttgaaatcgggaaaaacccaaactcatactcaaacccagtcaaagcggagaaaacccgtcaaa 43309614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 2 - 134
Target Start/End: Original strand, 45065301 - 45065433
Alignment:
Q  2 cgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgaggttgttttggacgga 101  Q
    ||||||||| |||||||||||||||| | |||||| ||||  ||| ||||||||| |||||| || |||||| | |||||| | ||||| ||||| |||     
T  45065301 cgtcccgtacccgtattttgaaatcgaggaaaacctaaacctatacccaaacccagtcaaattggggaaaactcgtcaaatcggggttggtttgggcggg 45065400  T
Q  102 tacccataagcatgagttttgttgtcatgccta 134  Q
    |||||||  ||| | ||||||||| ||||||||    
T  45065401 tacccatgggcacgggttttgttgccatgccta 45065433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 10302146 - 10302216
Alignment:
Q  12 ccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaat 82  Q
    ||||| |||||||||||| |||||| |||| |||| ||||||||||||||| ||| |||||||||||||||    
T  10302146 ccgtactttgaaatcggggaaaacctaaacccatacccaaacccaatcaaaacggggaaaacccatcaaat 10302216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 1866593 - 1866460
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgaggttgttttggacgg 100  Q
    ||||| |||| ||||||||||||||||||||||||||| || |||| ||| ||| | ||||||||| ||||| || |||||| | ||||| ||||| ||     
T  1866593 ccgtctcgtacccgtattttgaaatcgggaaaaacccatactcatacccagacctagtcaaatcggggaaaatccgtcaaatcggggttggtttgggcga 1866494  T
Q  101 atacccataagcatgagttttgttgtcatgccta 134  Q
     ||||||   ||| | ||||||||||| ||||||    
T  1866493 gtacccacgtgcacgggttttgttgtcttgccta 1866460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 31752518 - 31752590
Alignment:
Q  12 ccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattg 84  Q
    |||| ||||||||||||| |||||||| || |||||||||||||||||||| |||  ||||||| ||||||||    
T  31752518 ccgtgttttgaaatcggggaaaacccatacccatatccaaacccaatcaaaacggtaaaaacccgtcaaattg 31752590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 39086227 - 39086303
Alignment:
Q  20 tgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgaggttgttttgg 96  Q
    |||||||||  ||||| ||||| |||||||||||||||||||| ||||||||| || |||||||||| ||| |||||    
T  39086227 tgaaatcggagaaaactcaaactcatatccaaacccaatcaaaacggagaaaatccgtcaaattgagtttggtttgg 39086303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 15733570 - 15733439
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgaggttgttttggacgg 100  Q
    ||||| |||| |||||||||||||||| | ||||| || |  |||| ||||||| ||| ||||||| ||||||| ||||||| | ||||| ||||| |||    
T  15733570 ccgtctcgtacccgtattttgaaatcgaggaaaactcatatccatacccaaacctaataaaatcggggaaaacctatcaaatcggggttggtttgggcgg 15733471  T
Q  101 atacccataagcatgagttttgttgtcatgcc 132  Q
     || ||||  ||| |||||||||||| |||||    
T  15733470 gtatccatgggcacgagttttgttgttatgcc 15733439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 4 - 134
Target Start/End: Complemental strand, 31415972 - 31415842
Alignment:
Q  4 tcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgaggttgttttggacggata 103  Q
    ||||||| |||||||||||||||||  |||| ||||||  ||| | ||||||| ||||||||| |||||||| | |||| | ||||| ||||| ||| ||    
T  31415972 tcccgtacccgtattttgaaatcggagaaaatccaaacttatacctaaacccagtcaaatcggggaaaacccgttaaatcggggttgatttgggcgggta 31415873  T
Q  104 cccataagcatgagttttgttgtcatgccta 134  Q
    |||||   |||| |||| |||| ||||||||    
T  31415872 cccatggacatgggtttcgttgccatgccta 31415842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 1724297 - 1724229
Alignment:
Q  17 ttttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgag 86  Q
    ||||||||||||||||||||||||| |||| ||||||||| ||||| ||| |||||| | ||||||||||    
T  1724297 ttttgaaatcgggaaaaacccaaacccatacccaaacccagtcaaa-cggggaaaacacgtcaaattgag 1724229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 12505574 - 12505505
Alignment:
Q  12 ccgtattttgaaatcgggaaaaacccaaacacatatcc-aaacccaatcaaatcggagaaaacccatcaa 80  Q
    |||| ||||||||||||| ||||||||||| |||| || ||||||||||||| |||||||||||| ||||    
T  12505574 ccgtgttttgaaatcggggaaaacccaaactcataccctaaacccaatcaaagcggagaaaacccgtcaa 12505505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 6482078 - 6481994
Alignment:
Q  2 cgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgag 86  Q
    |||||| || |||| |||| |||| ||| ||||||||||| |||| ||||||||||||||| | ||||||| || ||||||||||    
T  6482078 cgtcccatacccgtgtttttaaattggggaaaacccaaacccatacccaaacccaatcaaaacagagaaaatccgtcaaattgag 6481994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 19883097 - 19883017
Alignment:
Q  4 tcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattg 84  Q
    ||||||| |||| |||| |||||||| ||||||||||| ||||  |||||||||||||| |||  ||||||| ||||||||    
T  19883097 tcccgtatccgtgttttaaaatcggggaaaacccaaactcatactcaaacccaatcaaagcgggaaaaacccgtcaaattg 19883017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 11028124 - 11028207
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattg 84  Q
    ||||||| || |||| |||||| |||||| |||||||| || |||| ||||| ||| ||||| |||||||||||| ||||||||    
T  11028124 ccgtcccatacccgtgttttgagatcggggaaaacccatacccatacccaaatccagtcaaaacggagaaaacccgtcaaattg 11028207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 14605969 - 14605902
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggag 68  Q
    ||||| |||| |||||||||||||||||  ||||||||||| |||| |||||| || |||||||||||    
T  14605969 ccgtctcgtacccgtattttgaaatcggagaaaacccaaacccatacccaaactcagtcaaatcggag 14605902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 131
Target Start/End: Complemental strand, 8843833 - 8843719
Alignment:
Q  17 ttttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgaggttgttttggacggatacccataagcatga 116  Q
    |||| |||||||||||||  |||||||||||||||||||| ||||| |   |||||||| ||||||| |  ||| || ||| | ||||||  | | ||||    
T  8843833 ttttaaaatcgggaaaaattcaaacacatatccaaacccagtcaaagcacggaaaacccgtcaaatttaatttggttcggatgaatacccgcatgtatga 8843734  T
Q  117 gttttgttgtcatgc 131  Q
    |||||||||||||||    
T  8843733 gttttgttgtcatgc 8843719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 131
Target Start/End: Complemental strand, 8856797 - 8856683
Alignment:
Q  17 ttttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgaggttgttttggacggatacccataagcatga 116  Q
    |||| |||||||||||||  |||||||||||||||||||| ||||| |   |||||||| ||||||| |  ||| || ||| | ||||||  | | ||||    
T  8856797 ttttaaaatcgggaaaaattcaaacacatatccaaacccagtcaaagcacggaaaacccgtcaaatttaatttggttcggatgaatacccgcatgtatga 8856698  T
Q  117 gttttgttgtcatgc 131  Q
    |||||||||||||||    
T  8856697 gttttgttgtcatgc 8856683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 7334240 - 7334108
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgaggttgttttggacgg 100  Q
    |||||||||| |||| ||||||||||||| |||| |||||  |||| ||||||||| ||||| |||  ||||||| |||||||  | ||| ||  | |||    
T  7334240 ccgtcccgta-ccgtgttttgaaatcggggaaaatccaaatccatacccaaacccagtcaaagcgggaaaaacccgtcaaattaggtttggttcaggcgg 7334142  T
Q  101 atacccataagcatgagttttgttgtcatgccta 134  Q
    ||||||  ||| ||| ||||||||| ||||||||    
T  7334141 atacccgcaagtatgggttttgttgccatgccta 7334108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 18423641 - 18423774
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgaggttgttttggacgg 100  Q
    |||||||||| ||||||| |||||| || |||||||| |||  |||  ||||||||||||||| || |||||||  |||||| | ||||| |||||  ||    
T  18423641 ccgtcccgtatccgtattatgaaattggaaaaaacccgaacttatactcaaacccaatcaaataggggaaaacctgtcaaatcggggttggtttgggtgg 18423740  T
Q  101 atacccataagcatgagttttgttgtcatgccta 134  Q
    |||| |||  ||| | |||||||||  |||||||    
T  18423741 atactcatgggcacgggttttgttgatatgccta 18423774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 30266339 - 30266279
Alignment:
Q  48 ccaaacccaatcaaatcggagaaaacccatcaaattgaggttgttttggacggatacccat 108  Q
    ||||||||| |||||||||||||||||| |||||| | ||||| ||||| ||| |||||||    
T  30266339 ccaaacccagtcaaatcggagaaaacccgtcaaatcggggttggtttgggcgggtacccat 30266279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 30285849 - 30285909
Alignment:
Q  48 ccaaacccaatcaaatcggagaaaacccatcaaattgaggttgttttggacggatacccat 108  Q
    ||||||||| |||||||||||||||||| |||||| | ||||| ||||| ||| |||||||    
T  30285849 ccaaacccagtcaaatcggagaaaacccgtcaaatcggggttggtttgggcgggtacccat 30285909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 37349174 - 37349246
Alignment:
Q  12 ccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattg 84  Q
    |||| ||||||||||||| ||||| ||||| |||| ||||||||| ||||| ||| |||||||  ||||||||    
T  37349174 ccgtgttttgaaatcggggaaaactcaaactcatacccaaacccagtcaaaacggggaaaacctgtcaaattg 37349246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 11173026 - 11173064
Alignment:
Q  3 gtcccgtaaccgtattttgaaatcgggaaaaacccaaac 41  Q
    |||||||| |||||||||||||||||| |||||||||||    
T  11173026 gtcccgtacccgtattttgaaatcggggaaaacccaaac 11173064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 21544632 - 21544670
Alignment:
Q  3 gtcccgtaaccgtattttgaaatcgggaaaaacccaaac 41  Q
    |||||||| ||||||||||||||||||||||| ||||||    
T  21544632 gtcccgtacccgtattttgaaatcgggaaaaatccaaac 21544670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 39375340 - 39375390
Alignment:
Q  12 ccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaa 62  Q
    |||||||||||||||||| |||| |||||| ||||||||||| || |||||    
T  39375340 ccgtattttgaaatcggggaaaagccaaactcatatccaaactcagtcaaa 39375390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 134
Target Start/End: Original strand, 11173069 - 11173126
Alignment:
Q  77 tcaaattgaggttgttttggacggatacccataagcatgagttttgttgtcatgccta 134  Q
    |||||| | ||||| ||||| ||| |||||||| ||||||||||||||| ||||||||    
T  11173069 tcaaatcggggttggtttgggcgggtacccatatgcatgagttttgttgccatgccta 11173126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 72
Target Start/End: Complemental strand, 35304530 - 35304489
Alignment:
Q  31 aaaacccaaacacatatccaaacccaatcaaatcggagaaaa 72  Q
    ||||||||||| |||||||||| ||||||||| |||||||||    
T  35304530 aaaacccaaacccatatccaaatccaatcaaaacggagaaaa 35304489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 47103793 - 47103854
Alignment:
Q  5 cccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcgg 66  Q
    |||||| |||||||||||||| ||| ||||||||||| ||||   ||||||| |||||||||    
T  47103793 cccgtacccgtattttgaaattggggaaaacccaaacccatacaaaaacccagtcaaatcgg 47103854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 15987295 - 15987223
Alignment:
Q  12 ccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattg 84  Q
    |||| |||| ||||| || ||||| || || |||| |||||||||||||||  ||||||||||| ||||||||    
T  15987295 ccgtgttttaaaatctgggaaaactcatacccatacccaaacccaatcaaaatggagaaaacccgtcaaattg 15987223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 29527863 - 29527903
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaac 41  Q
    ||||| |||| |||||||||||||||||| |||||||||||    
T  29527863 ccgtcacgtacccgtattttgaaatcggggaaaacccaaac 29527903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 130
Target Start/End: Original strand, 43553498 - 43553625
Alignment:
Q  2 cgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgaggttgttttggacgga 101  Q
    |||||| || |||| |||||||||||  ||||| | |||  |||| |||||| || ||||| |||||||||||| |||||||| ||||| || |||   |    
T  43553498 cgtcccatacccgtgttttgaaatcgaaaaaaatcgaaatgcatacccaaactcagtcaaagcggagaaaacccgtcaaattg-ggttggttcggataaa 43553596  T
Q  102 tacccataagcatgagttttgttgtcatg 130  Q
    |||||| ||  | ||||||||||||||||    
T  43553597 tacccacaaatacgagttttgttgtcatg 43553625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 15173923 - 15173816
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgaggttgttttggacgg 100  Q
    |||||||||| |||||||||||||||||||||||| |||||||||| ||||||||| ||||||| |||||||||| |||||| ||||||| ||||| |||    
T  15173923 ccgtcccgtacccgtattttgaaatcgggaaaaactcaaacacatacccaaacccagtcaaatcagagaaaacccgtcaaatcgaggttggtttgggcgg 15173824  T
Q  101 atacccat 108  Q
     |||||||    
T  15173823 gtacccat 15173816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 3 - 134
Target Start/End: Complemental strand, 15068629 - 15068498
Alignment:
Q  3 gtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgaggttgttttggacggat 102  Q
    |||||||| |||||||||||||||||| ||||||| ||| |||| ||| ||||| ||||||||| |||||||| |||||| | ||||| ||||| ||| |    
T  15068629 gtcccgtacccgtattttgaaatcggggaaaacccgaacccatacccagacccagtcaaatcggggaaaacccgtcaaatcggggttggtttgggcgggt 15068530  T
Q  103 acccataagcatgagttttgttgtcatgccta 134  Q
    ||||||  ||| | ||||||||| ||||||||    
T  15068529 acccatgggcacgggttttgttgccatgccta 15068498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 27777239 - 27777159
Alignment:
Q  3 gtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaatt 83  Q
    |||||||| | || ||||||||||||||||||| |||||||||| ||||||||| ||||| |||||||||||| |||||||    
T  27777239 gtcccgtacctgtgttttgaaatcgggaaaaactcaaacacatacccaaacccagtcaaaacggagaaaacccgtcaaatt 27777159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 5858695 - 5858612
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattg 84  Q
    ||||||| || |||| |||| |||||||||||||||||||| |||| ||||||||||||||| ||| |||||||| ||||||||    
T  5858695 ccgtcccatacccgtgtttttaaatcgggaaaaacccaaacccatacccaaacccaatcaaaacggggaaaacccgtcaaattg 5858612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 14155588 - 14155660
Alignment:
Q  12 ccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattg 84  Q
    |||| ||||||||||||||||||||||||| |||| ||||||||| ||| | ||| |||||||| ||||||||    
T  14155588 ccgtgttttgaaatcgggaaaaacccaaactcatacccaaacccagtcataccggggaaaacccgtcaaattg 14155660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 10297505 - 10297584
Alignment:
Q  3 gtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaat 82  Q
    |||||||  |||||||||||||||||| ||||||||||  || ||||||||||||| ||||| | |||||||| ||||||    
T  10297505 gtcccgtccccgtattttgaaatcggggaaaacccaaattcacatccaaacccaataaaatcagggaaaacccgtcaaat 10297584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 2 - 84
Target Start/End: Original strand, 27932459 - 27932541
Alignment:
Q  2 cgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattg 84  Q
    |||||| || |||| ||||||||||||| |||||||| || |||| ||||||||| ||||| ||| |||||||| ||||||||    
T  27932459 cgtcccatacccgtgttttgaaatcggggaaaacccatacccatacccaaacccagtcaaaacggggaaaacccgtcaaattg 27932541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 50 - 108
Target Start/End: Complemental strand, 41188726 - 41188668
Alignment:
Q  50 aaacccaatcaaatcggagaaaacccatcaaattgaggttgttttggacggatacccat 108  Q
    |||| ||||||||||||| |||||||||||||||  ||||| |||||||||||||||||    
T  41188726 aaactcaatcaaatcggaaaaaacccatcaaattagggttggtttggacggatacccat 41188668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 99
Target Start/End: Complemental strand, 39445617 - 39445521
Alignment:
Q  3 gtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgaggttgttttggacg 99  Q
    ||||| || |||| |||||||||||||||||||||| || |||| ||||||| | ||||| ||| ||||| || |||||||||| ||| || |||||    
T  39445617 gtcccatacccgtgttttgaaatcgggaaaaacccatacccatacccaaacctagtcaaaacggggaaaatccgtcaaattgagtttggttcggacg 39445521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 2075861 - 2075794
Alignment:
Q  17 ttttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattg 84  Q
    |||||| ||||||||||||||| || |||| ||||||||| ||||| ||||||||| || ||||||||    
T  2075861 ttttgagatcgggaaaaacccatacccatacccaaacccagtcaaaacggagaaaatccgtcaaattg 2075794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 20399637 - 20399720
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattg 84  Q
    ||||||| || |||| ||||||||||||  ||||||||||| |||| ||||||||| ||||| ||| |||||| | ||||||||    
T  20399637 ccgtcccatacccgtgttttgaaatcggagaaaacccaaacccatacccaaacccagtcaaaacggggaaaactcgtcaaattg 20399720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 29108849 - 29108782
Alignment:
Q  17 ttttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattg 84  Q
    |||| ||||||||||||||||| || |||| ||||||||| ||||| ||| |||||||| ||||||||    
T  29108849 ttttaaaatcgggaaaaacccatacccatacccaaacccagtcaaaacggggaaaacccgtcaaattg 29108782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 30481452 - 30481385
Alignment:
Q  13 cgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaa 80  Q
    |||||||||||||| |||||||||||||| ||||  |||||||||||||| | | ||||| |||||||    
T  30481452 cgtattttgaaatcaggaaaaacccaaactcatactcaaacccaatcaaaacagggaaaatccatcaa 30481385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 27056598 - 27056517
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaat 82  Q
    ||||||| || | ||| |||||||||||||||||||||||| |||| |||||||||  |||| ||  |||||||| ||||||    
T  27056598 ccgtcccatacctgtactttgaaatcgggaaaaacccaaacccataaccaaacccagccaaagcgaggaaaacccgtcaaat 27056517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 135
Target Start/End: Complemental strand, 2183643 - 2183515
Alignment:
Q  7 cgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgaggttgttttggacggataccc 106  Q
    |||| |||||||||||||||||  |||| |||||| |||| | ||||||| |||||| | | |||| || | |||| |  |||| |||||  || |||||    
T  2183643 cgtacccgtattttgaaatcggagaaaatccaaactcatacctaaacccagtcaaattgaaaaaaatccgtaaaatcggagttggtttgggtgggtaccc 2183544  T
Q  107 ataagcatgagttttgttgtcatgcctat 135  Q
    || ||||||  ||||||||||||||||||    
T  2183543 atgagcatggattttgttgtcatgcctat 2183515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 37961003 - 37960923
Alignment:
Q  3 gtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaatt 83  Q
    ||||| || |||| |||| |||||||| ||||||||||| |||| ||||||| | ||||| |||  |||||||||||||||    
T  37961003 gtcccatacccgtgtttttaaatcggggaaaacccaaactcatacccaaacctagtcaaaacgggaaaaacccatcaaatt 37960923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 14687460 - 14687527
Alignment:
Q  17 ttttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattg 84  Q
    ||||||||||||| ||||||||||  |||| |||||||||||||||  || ||||||||  |||||||    
T  14687460 ttttgaaatcggggaaaacccaaatccatacccaaacccaatcaaagtggggaaaacccgccaaattg 14687527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 1012684 - 1012746
Alignment:
Q  22 aaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattg 84  Q
    |||||||| ||||||||||| |||| |||||| |||||||| ||  |||||||| ||||||||    
T  1012684 aaatcggggaaaacccaaactcatacccaaactcaatcaaaacgaggaaaacccgtcaaattg 1012746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 32392413 - 32392340
Alignment:
Q  17 ttttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgaggttg 90  Q
    ||||||||||| ||||||||||||  |||| | ||||||| | ||| |||  |||||||||||||||| |||||    
T  32392413 ttttgaaatcgagaaaaacccaaatccataccaaaacccatttaaagcgggaaaaacccatcaaattggggttg 32392340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 34139503 - 34139574
Alignment:
Q  12 ccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattg 84  Q
    |||| |||| |||||||| |||||| ||||||||| ||||||||| ||||| ||  |||||||| ||||||||    
T  34139503 ccgtgtttttaaatcggggaaaacc-aaacacatacccaaacccagtcaaaacgaggaaaacccgtcaaattg 34139574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 43113658 - 43113586
Alignment:
Q  12 ccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattg 84  Q
    |||| ||||||||||||||||||||||| | ||||  |||||||| ||||| | | |||||||| | ||||||    
T  43113658 ccgtgttttgaaatcgggaaaaacccaatctcatacgcaaacccagtcaaagcagggaaaacccgttaaattg 43113586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 4 - 134
Target Start/End: Original strand, 2681264 - 2681394
Alignment:
Q  4 tcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgaggttgttttggacggata 103  Q
    ||||||| | |||||||||||||||| ||||||||||| |||  |||||| || ||||||||| |||||||| |||||||||||||| ||||||||| ||    
T  2681264 tcccgtacctgtattttgaaatcggggaaaacccaaactcatgcccaaactcagtcaaatcggggaaaacccgtcaaattgaggttggtttggacgggta 2681363  T
Q  104 cccataagcatgagttttgttgtcatgccta 134  Q
    |||||  ||| ||||||||||| ||||||||    
T  2681364 cccatgggcacgagttttgttgccatgccta 2681394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 28569065 - 28568932
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgaggttgttttggacgg 100  Q
    |||||||||| ||| |||||||||||||| |||| |||||| |||| ||||||||| ||||||| | |||||||| |||||| |||| || ||||| |||    
T  28569065 ccgtcccgtacccgcattttgaaatcggggaaaatccaaactcatacccaaacccagtcaaatcagggaaaacccgtcaaatcgaggatggtttgggcgg 28568966  T
Q  101 atacccataagcatgagttttgttgtcatgccta 134  Q
     ||||||  | |||| ||||||||| ||||||||    
T  28568965 ctacccacgaacatgggttttgttgccatgccta 28568932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 14 - 134
Target Start/End: Original strand, 12915531 - 12915650
Alignment:
Q  14 gtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgaggttgttttggacggatacccataagca 113  Q
    ||||| |||||||||||||||||||||| |||| |||| |||| ||||||||| | ||| || |||||| |  |||| ||||| ||| ||||||||||||    
T  12915531 gtattatgaaatcgggaaaaacccaaacccatacccaaccccagtcaaatcgg-ggaaatccgtcaaatcggtgttggtttgggcgggtacccataagca 12915629  T
Q  114 tgagttttgttgtcatgccta 134  Q
    ||  |||||||||||||||||    
T  12915630 tggattttgttgtcatgccta 12915650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 4583164 - 4583247
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattg 84  Q
    ||||||| || |||| ||||||||||||| |||||||| || |||||||||||||||||||| ||| |||||||| ||||||||    
T  4583164 ccgtcccatacccgtgttttgaaatcggggaaaacccatacccatatccaaacccaatcaaaacggggaaaacccgtcaaattg 4583247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 39422402 - 39422464
Alignment:
Q  12 ccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacc 74  Q
    |||| ||||||||||| ||||||||||||| |||||||||||||||||||| ||| |||||||    
T  39422402 ccgtgttttgaaatcgagaaaaacccaaactcatatccaaacccaatcaaagcggggaaaacc 39422464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 4 - 108
Target Start/End: Complemental strand, 23045032 - 23044928
Alignment:
Q  4 tcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgaggttgttttggacggata 103  Q
    ||||||| |||||||||||||||||| |||||| |||| |||| |||||| || |||||| ||  ||||||| |||||| | ||||| ||||| ||| ||    
T  23045032 tcccgtacccgtattttgaaatcggggaaaacctaaacccatacccaaactcagtcaaattgggaaaaacccgtcaaatcggggttggtttgggcgggta 23044933  T
Q  104 cccat 108  Q
    |||||    
T  23044932 cccat 23044928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 4920871 - 4920954
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattg 84  Q
    ||||||| || |||| |||||| |||||| |||||||| || |||| ||||||||| ||||| |||||||||||| ||||||||    
T  4920871 ccgtcccatacccgtgttttgagatcggggaaaacccatacccataaccaaacccagtcaaaacggagaaaacccgtcaaattg 4920954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 6155953 - 6155890
Alignment:
Q  12 ccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaaccc 75  Q
    |||| ||||||||||||| |||||||||||||||| ||||||||| ||||| || |||||||||    
T  6155953 ccgtgttttgaaatcggggaaaacccaaacacatacccaaacccagtcaaaacgaagaaaaccc 6155890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 6092562 - 6092489
Alignment:
Q  12 ccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattga 85  Q
    |||| |||||| ||||||||||||||| || |||| ||||||||||||||| ||| |||||||| | |||||||    
T  6092562 ccgtgttttgagatcgggaaaaacccatacccatacccaaacccaatcaaaacggggaaaacccgttaaattga 6092489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 12 - 136
Target Start/End: Complemental strand, 40187690 - 40187566
Alignment:
Q  12 ccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgaggttgttttggacggatacccataag 111  Q
    |||| ||||||||| ||| ||||||||||| ||| |||||||||| ||||| ||  |||||||| ||||| |||| ||| || |||||| |||||  | |    
T  40187690 ccgtgttttgaaattggggaaaacccaaactcatttccaaacccagtcaaagcgaggaaaacccgtcaaaatgagtttggttcggacgggtacccgcagg 40187591  T
Q  112 catgagttttgttgtcatgcctatt 136  Q
     |||||||||| || |||| |||||    
T  40187590 tatgagttttgctgccatgtctatt 40187566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 33728045 - 33727962
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattg 84  Q
    ||||||| || |||| |||||| |||||| |||| ||| || |||||||||||||||||||| ||| ||||| || ||||||||    
T  33728045 ccgtcccatacccgtgttttgagatcggggaaaatccatacccatatccaaacccaatcaaaacggggaaaatccgtcaaattg 33727962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 16311321 - 16311255
Alignment:
Q  17 ttttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaatt 83  Q
    |||||||||||| |||||| ||||| |||||||||||||||||||| |||  |||| || |||||||    
T  16311321 ttttgaaatcggaaaaaactcaaactcatatccaaacccaatcaaagcgggaaaaaaccgtcaaatt 16311255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 43523804 - 43523858
Alignment:
Q  12 ccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcgg 66  Q
    |||||||||||||||||| ||||||||||| |||| |||||| || |||||||||    
T  43523804 ccgtattttgaaatcggggaaaacccaaactcatacccaaactcagtcaaatcgg 43523858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 17853320 - 17853255
Alignment:
Q  18 tttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaatt 83  Q
    |||||||||||| |||||||| |  |||| ||||||||||||||| ||| |||||||| |||||||    
T  17853320 tttgaaatcggggaaaacccatatccatacccaaacccaatcaaaacggggaaaacccgtcaaatt 17853255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 38972983 - 38973040
Alignment:
Q  17 ttttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacc 74  Q
    ||||||||||||||||||||||||| |||| | ||||||| ||||| ||| |||||||    
T  38972983 ttttgaaatcgggaaaaacccaaactcatacctaaacccagtcaaaacggggaaaacc 38973040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 15890251 - 15890334
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattg 84  Q
    ||||||| || |||| ||||||||||||  |||||||| ||||||| ||||||| | ||||| |||  ||||||| ||||||||    
T  15890251 ccgtcccatacccgtgttttgaaatcggagaaaacccatacacatagccaaacctagtcaaaacgggaaaaacccgtcaaattg 15890334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 49 - 132
Target Start/End: Original strand, 34259336 - 34259419
Alignment:
Q  49 caaacccaatcaaatcggagaaaacccatcaaattgaggttgttttggacggatacccataagcatgagttttgttgtcatgcc 132  Q
    |||||||| ||||||| |  |||||| ||||||| | ||||| |||||||||||||||| | ||| | ||||||||| ||||||    
T  34259336 caaacccagtcaaatcaggaaaaacctatcaaatcggggttggtttggacggatacccagaggcacgggttttgttgccatgcc 34259419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 18116550 - 18116496
Alignment:
Q  12 ccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcgg 66  Q
    |||||||||||||||||  ||||||||||| |||| |||||| || |||||||||    
T  18116550 ccgtattttgaaatcggagaaaacccaaactcatacccaaactcagtcaaatcgg 18116496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 27900429 - 27900388
Alignment:
Q  17 ttttgaaatcgggaaaaacccaaacacatatccaaacccaat 58  Q
    ||||||||||||||||||| |||||  |||||||||||||||    
T  27900429 ttttgaaatcgggaaaaactcaaacctatatccaaacccaat 27900388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 12712601 - 12712561
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaac 41  Q
    |||||||||| |||||||||||||||||  |||||||||||    
T  12712601 ccgtcccgtacccgtattttgaaatcggagaaaacccaaac 12712561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 12773865 - 12773825
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaac 41  Q
    |||||||||| |||||||||||||||||  |||||||||||    
T  12773865 ccgtcccgtacccgtattttgaaatcggagaaaacccaaac 12773825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 29245994 - 29245910
Alignment:
Q  2 cgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgag 86  Q
    |||||| || |||| ||||||||||||  ||||| || || |||| ||||||| | ||||| ||| |||||||| ||||||||||    
T  29245994 cgtcccatacccgtgttttgaaatcggagaaaactcatacccatacccaaacctagtcaaaacggggaaaacccgtcaaattgag 29245910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 42417315 - 42417279
Alignment:
Q  46 atccaaacccaatcaaatcggagaaaacccatcaaat 82  Q
    ||||||||||||||||| |||||||||||||| ||||    
T  42417315 atccaaacccaatcaaagcggagaaaacccataaaat 42417279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 16237347 - 16237224
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgaggttgttttggacgg 100  Q
    ||||||| || |||||||||||||||||| ||||||||||  ||||||||||| || |||||| ||||||| ||||||||||   ||||| |||||||||    
T  16237347 ccgtcccttacccgtattttgaaatcggggaaaacccaaattcatatccaaactcagtcaaattggagaaagcccatcaaatcagggttggtttggacgg 16237248  T
Q  101 atacccataagcatgagttttgtt 124  Q
     |||| || |||||||||||||||    
T  16237247 gtacctatgagcatgagttttgtt 16237224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 34085297 - 34085361
Alignment:
Q  17 ttttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaa 81  Q
    ||||||||||||||||||||||||| ||||||| |||||| ||||| |||||||||||| |||||    
T  34085297 ttttgaaatcgggaaaaacccaaactcatatcctaacccagtcaaagcggagaaaacccgtcaaa 34085361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 33293574 - 33293503
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaa 72  Q
    ||||||| || |||| ||||||||||||||||||||||||| |||| ||||||||||||||| |||| ||||    
T  33293574 ccgtcccatacccgtgttttgaaatcgggaaaaacccaaactcatacccaaacccaatcaaaacggaaaaaa 33293503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 49250816 - 49250683
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgaggttgttttggacgg 100  Q
    ||||||| || |||| |||||| |||||| ||||| || || |||| ||||||||| ||||| |||||||||||| |||||||||  ||| || || |||    
T  49250816 ccgtcccatacccgtgttttgagatcggggaaaactcatacccatacccaaacccagtcaaaacggagaaaacccgtcaaattgaatttggttcgggcgg 49250717  T
Q  101 atacccataagcatgagttttgttgtcatgccta 134  Q
    ||| |||   | |||| |||||||||||||||||    
T  49250716 ataaccacgggtatgaattttgttgtcatgccta 49250683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 2514814 - 2514910
Alignment:
Q  12 ccgtattttgaaatcgggaaaaacccaaacacatatcc-aaacccaatcaaatcggagaaaacccatcaaattgaggttgttttggacggataccca 107  Q
    |||| ||||||||| ||| ||||||||||| |||| || ||||||||||||| ||| ||||||||||||| ||| | ||| ||||||||| ||||||    
T  2514814 ccgtgttttgaaattggggaaaacccaaactcataccccaaacccaatcaaaacggggaaaacccatcaagttgggtttggtttggacgggtaccca 2514910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 10778610 - 10778526
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattga 85  Q
    ||||||| || |||| |||||||||||||||||||  |||| |||| ||||||||| ||||| |||| ||||||| |||||||||    
T  10778610 ccgtcccatacccgtgttttgaaatcgggaaaaacttaaactcatacccaaacccagtcaaagcggaaaaaacccgtcaaattga 10778526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 24710893 - 24710977
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattga 85  Q
    ||||||| || |||| |||||| |||||| |||||||| || |||||||||||||| ||||| ||| |||||||| |||||||||    
T  24710893 ccgtcccatacccgtgttttgagatcggggaaaacccatactcatatccaaacccagtcaaaacggggaaaacccgtcaaattga 24710977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 51421904 - 51421987
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattg 84  Q
    ||||||| || |||| |||||| ||||||||||||||| || |||| ||||||||| |||||  || |||||||||||||||||    
T  51421904 ccgtcccatacccgtgttttgagatcgggaaaaacccatacccatacccaaacccagtcaaaatggggaaaacccatcaaattg 51421987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 5181085 - 5181169
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattga 85  Q
    ||||||| || |||||||||||||||||| |||||||| || |||| | ||||||| |||||  || |||||||| |||||||||    
T  5181085 ccgtcccatacccgtattttgaaatcggggaaaacccatacccatacctaaacccagtcaaaatggggaaaacccgtcaaattga 5181169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 13798295 - 13798367
Alignment:
Q  12 ccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattg 84  Q
    |||| ||||||||||||||||||||||||| |||| ||||||||| ||| | ||| |||||||| | ||||||    
T  13798295 ccgtgttttgaaatcgggaaaaacccaaactcatacccaaacccagtcataccggggaaaacccgttaaattg 13798367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 19572553 - 19572473
Alignment:
Q  3 gtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaatt 83  Q
    ||||| || |||| |||||||||||||||||||||| || |||| ||||||||| |||||  || |||||||| |||||||    
T  19572553 gtcccatacccgtgttttgaaatcgggaaaaacccatacccatacccaaacccagtcaaaatggggaaaacccgtcaaatt 19572473  T

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Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 27867265 - 27867345
Alignment:
Q  17 ttttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgaggttgttttgga 97  Q
    |||||||||| |||||||| | |||||||||  ||||||| ||||| ||||||||||| ||||||||| ||| | ||||||    
T  27867265 ttttgaaatcaggaaaaactcgaacacatatttaaacccagtcaaaacggagaaaacctatcaaattggggtgggtttgga 27867345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 134
Target Start/End: Complemental strand, 24236793 - 24236671
Alignment:
Q  12 ccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgaggttgttttggacggatacccataag 111  Q
    |||| |||||| |||||| |||||||| || |||| | ||||||| ||||| |||  ||||||| |||||||||| ||| || || ||| || ||||  |    
T  24236793 ccgtgttttgagatcggggaaaacccatacccatacctaaacccagtcaaaacgggaaaaacccgtcaaattgagtttggttcgggcgggtaaccatggg 24236694  T
Q  112 catgagttttgttgtcatgccta 134  Q
     ||||||||||||| ||||||||    
T  24236693 tatgagttttgttgccatgccta 24236671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 13020655 - 13020724
Alignment:
Q  17 ttttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgag 86  Q
    ||||||||||||| |||||||| || |||| ||||||||| ||||  |||||||||||| ||| ||||||    
T  13020655 ttttgaaatcggggaaaacccatacccataaccaaacccagtcaagacggagaaaacccgtcagattgag 13020724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 34611121 - 34611202
Alignment:
Q  3 gtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattg 84  Q
    ||||| || |||| |||||| ||||||||||||||| || |||| |||||  |||||||| ||| |||||||| ||||||||    
T  34611121 gtcccatacccgtgttttgagatcgggaaaaacccatacccatacccaaattcaatcaaaacggggaaaacccgtcaaattg 34611202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 44615518 - 44615433
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgag 86  Q
    ||||||| || |||| |||| ||||| || ||||||||||| |||| ||||||||| ||||| |||  ||||||| ||||||||||    
T  44615518 ccgtcccatacccgtgtttttaaatcagggaaaacccaaactcatacccaaacccagtcaaaacgggaaaaacccgtcaaattgag 44615433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 44793051 - 44793136
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgag 86  Q
    ||||||| || |||| |||| ||||| || ||||||||||| |||| ||||||||| ||||| |||  ||||||| ||||||||||    
T  44793051 ccgtcccatacccgtgtttttaaatcagggaaaacccaaactcatacccaaacccagtcaaaacgggaaaaacccgtcaaattgag 44793136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 9982922 - 9982850
Alignment:
Q  12 ccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattg 84  Q
    |||| ||||||||| ||| ||||  ||||| |||| ||||||||| ||||| ||||||||| |||||||||||    
T  9982922 ccgtgttttgaaattggggaaaattcaaactcatacccaaacccagtcaaaacggagaaaatccatcaaattg 9982850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 13692675 - 13692759
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattga 85  Q
    |||||||||| || | || |||||||||||||||| ||||| ||||  ||||||||||  || |||  |||||||||||||||||    
T  13692675 ccgtcccgtacccatgttatgaaatcgggaaaaactcaaactcatactcaaacccaatttaagcgggtaaaacccatcaaattga 13692759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 23968625 - 23968708
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattg 84  Q
    ||||||| || |||| |||||||| |||| |||||||| || |||| |||||||||||||||  || ||||| || ||||||||    
T  23968625 ccgtcccatacccgtgttttgaaaccggggaaaacccatacccatacccaaacccaatcaaaatggggaaaatccgtcaaattg 23968708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 29871312 - 29871198
Alignment:
Q  17 ttttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgaggttgttttggacggatacccataagcatga 116  Q
    ||||||||||||  ||||||||||| |||| ||||||  | ||||| ||  |||||||| |||||||||| |||  | ||| ||||| |||  || ||||    
T  29871312 ttttgaaatcggagaaaacccaaactcatacccaaacttagtcaaaacgaggaaaacccgtcaaattgagtttg-gtcggatggataaccacgagtatga 29871214  T
Q  117 gttttgttgtcatgcc 132  Q
    ||||||||||||||||    
T  29871213 gttttgttgtcatgcc 29871198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 84
Target Start/End: Original strand, 12495057 - 12495139
Alignment:
Q  2 cgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattg 84  Q
    |||||| || |||| |||||||||||||||||||| |||| |||| | ||||||| |||||  || ||||| || ||||||||    
T  12495057 cgtcccatatccgtgttttgaaatcgggaaaaaccaaaacccataccgaaacccagtcaaagtggggaaaatccgtcaaattg 12495139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 17135004 - 17135076
Alignment:
Q  12 ccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattg 84  Q
    |||| ||||||||||||| |||||||| || || | ||||||||| ||||| | ||||||| || ||||||||    
T  17135004 ccgtgttttgaaatcggggaaaacccatacccacacccaaacccagtcaaaacagagaaaatccgtcaaattg 17135076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 18354107 - 18354039
Alignment:
Q  17 ttttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattga 85  Q
    ||||||||||||| |||||||| || ||||| |||| ||| ||||| |||  ||||||| |||||||||    
T  18354107 ttttgaaatcggggaaaacccatacccatattcaaatccagtcaaaacgggaaaaacccgtcaaattga 18354039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 34673314 - 34673270
Alignment:
Q  12 ccgtattttgaaatcgggaaaaacccaaacacatatccaaaccca 56  Q
    |||| ||||||||| ||||||||||||||| |||| |||||||||    
T  34673314 ccgtgttttgaaattgggaaaaacccaaacccatacccaaaccca 34673270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 41476995 - 41476915
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaa 81  Q
    ||||||||||  ||||||||  |||||  |||||||||||| ||||| ||||| || ||||| |||  |||||||||||||    
T  41476995 ccgtcccgtactcgtattttccaatcgaaaaaaacccaaactcatattcaaactcagtcaaagcgggaaaaacccatcaaa 41476915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 29341322 - 29341386
Alignment:
Q  22 aaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgag 86  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||    
T  29341322 aaatcgggaaaaacccaaactcatatccaaacccaatcaaaacggagaaaactcatcaaattgag 29341386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 3 - 96
Target Start/End: Original strand, 9458710 - 9458803
Alignment:
Q  3 gtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgaggttgttttgg 96  Q
    |||||||| |||||||||||||| ||| ||| | ||||| |||| ||||||||| ||||||||| ||||| || |||||| ||||||| |||||    
T  9458710 gtcccgtacccgtattttgaaattggggaaatctcaaactcatacccaaacccagtcaaatcggggaaaatccgtcaaatcgaggttggtttgg 9458803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 18908938 - 18909071
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgaggttgttttggacgg 100  Q
    ||||||| || |||||||||||||||||| ||||||||||| ||||  ||||| || ||| |||||  |||| || |||||| ||||||| ||||| |||    
T  18908938 ccgtcccatatccgtattttgaaatcggggaaaacccaaactcatactcaaactcagtcacatcgggaaaaatccgtcaaatcgaggttggtttgggcgg 18909037  T
Q  101 atacccataagcatgagttttgttgtcatgccta 134  Q
     |||| ||  ||| | ||||||||| ||||||||    
T  18909038 gtacctatgggcacgggttttgttgccatgccta 18909071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 5863426 - 5863343
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattg 84  Q
    ||||||| || |||| ||||||||||||| |||||||| || |||| ||||||||| ||||| ||| |||||||| ||||||||    
T  5863426 ccgtcccatacccgtgttttgaaatcggggaaaacccatacccatacccaaacccagtcaaaacggggaaaacccgtcaaattg 5863343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 32853889 - 32853972
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattg 84  Q
    ||||||| || |||| |||||| |||||| |||||||| || |||| ||||||||| ||||| |||||||||||| ||||||||    
T  32853889 ccgtcccatacccgtgttttgagatcggggaaaacccatacccataaccaaacccagtcaaaacggagaaaacccgtcaaattg 32853972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 20611025 - 20610892
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgaggttgttttggacgg 100  Q
    ||||||| || |||||||||||||||||| ||| ||||||| |||| | ||||||| | |||||||  ||||||| |||||| || |||| ||| | |||    
T  20611025 ccgtcccctacccgtattttgaaatcggggaaaccccaaacccatacctaaacccagttaaatcgggaaaaacccgtcaaatcgaagttggttttggcgg 20610926  T
Q  101 atacccataagcatgagttttgttgtcatgccta 134  Q
     |||||||  ||| |  |||||||| ||||||||    
T  20610925 gtacccatgggcacggtttttgttgccatgccta 20610892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 27534729 - 27534862
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgaggttgttttggacgg 100  Q
    ||||||| || |||| ||| || |||||| ||||| || || |||| ||||||||||||||| ||| |||||||| |||||||||| ||| || ||||||    
T  27534729 ccgtcccatacccgtgtttcgagatcggggaaaactcatacccatacccaaacccaatcaaaacggggaaaacccgtcaaattgagtttggttcggacgg 27534828  T
Q  101 atacccataagcatgagttttgttgtcatgccta 134  Q
     || |||   | ||| ||||||||| ||||||||    
T  27534829 ttaaccacgggtatgggttttgttgccatgccta 27534862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 27738817 - 27738901
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattga 85  Q
    ||||||| || |||| ||||||||||||| |||||||| || |||| | ||||||| ||||| |||  |||||||||||||||||    
T  27738817 ccgtcccatacccgtgttttgaaatcggggaaaacccatacccatacctaaacccagtcaaaacgggaaaaacccatcaaattga 27738901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 32532585 - 32532668
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattg 84  Q
    ||||||| || |||| ||||||||||||| |||||||| || ||||  |||||||||| ||| |||| ||||||| ||||||||    
T  32532585 ccgtcccatacccgtgttttgaaatcggggaaaacccatactcatactcaaacccaatgaaaacggaaaaaacccgtcaaattg 32532668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 134
Target Start/End: Original strand, 24225796 - 24225882
Alignment:
Q  48 ccaaacccaatcaaatcggagaaaacccatcaaattgaggttgttttggacggatacccataagcatgagttttgttgtcatgccta 134  Q
    ||||||||||||||| ||| |||||||  |||||||||  ||| || |||||| || ||||  | ||||||||||||||||||||||    
T  24225796 ccaaacccaatcaaaacggggaaaacctgtcaaattgaatttggttcggacgggtaaccatgggtatgagttttgttgtcatgccta 24225882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 9442475 - 9442559
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgag 86  Q
    ||||||| || |||| ||||||||||||||||| |||| || |||| ||||| ||| ||||| ||| |||||||| ||||||||||    
T  9442475 ccgtcccatacccgtgttttgaaatcgggaaaatcccatacccatacccaaa-ccagtcaaaacggggaaaacccgtcaaattgag 9442559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 17546942 - 17546814
Alignment:
Q  4 tcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgaggttgttttggacggata 103  Q
    ||||||| ||||||| |||||||| | ||| ||||||| |||| ||||||||| |||||| | | |||||||||| |||   ||||| ||||| | | ||    
T  17546942 tcccgtatccgtattatgaaatcgaggaaaccccaaacccatacccaaacccagtcaaattgaaaaaaacccatc-aatcagggttggtttgggcaggta 17546844  T
Q  104 cccataagcatgagttttgttgtcatgcct 133  Q
    ||||||  |||| ||||||||| |||||||    
T  17546843 cccatagacatgggttttgttgccatgcct 17546814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 31 - 84
Target Start/End: Original strand, 30816333 - 30816386
Alignment:
Q  31 aaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattg 84  Q
    ||||| ||||| |||||||||||||||||||| ||| ||||| |||||||||||    
T  30816333 aaaactcaaacccatatccaaacccaatcaaaacggggaaaatccatcaaattg 30816386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 15498380 - 15498452
Alignment:
Q  12 ccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattg 84  Q
    |||| ||||||||||||| |||||||| |  |||| ||||||||| ||||| |||||||||||| | ||||||    
T  15498380 ccgtgttttgaaatcggggaaaacccatatccatacccaaacccattcaaaacggagaaaacccgttaaattg 15498452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 134
Target Start/End: Complemental strand, 29199895 - 29199807
Alignment:
Q  46 atccaaacccaatcaaatcggagaaaacccatcaaattgaggttgttttggacggatacccataagcatgagttttgttgtcatgccta 134  Q
    ||||||||||||||||||||| ||||| || |||||| | ||||| ||||| ||| |||| ||  |||||  |||||||| ||||||||    
T  29199895 atccaaacccaatcaaatcggggaaaatccgtcaaatcggggttggtttgggcgggtacctatgggcatggattttgttgccatgccta 29199807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 2367371 - 2367454
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattg 84  Q
    ||||||| || |||| |||||| |||||| |||||||| || |||| ||||||| | ||||| |||  ||||||||||||||||    
T  2367371 ccgtcccatacccgtgttttgagatcggggaaaacccatacccatacccaaacctagtcaaaacgggaaaaacccatcaaattg 2367454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 129
Target Start/End: Complemental strand, 34345988 - 34345926
Alignment:
Q  67 agaaaacccatcaaattgaggttgttttggacggatacccataagcatgagttttgttgtcat 129  Q
    |||||||| ||||||||||| ||| || |||||| ||||||  || |||||||||||||||||    
T  34345988 agaaaaccaatcaaattgagcttggttcggacgggtacccacgagtatgagttttgttgtcat 34345926  T

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Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 256519 - 256450
Alignment:
Q  17 ttttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgag 86  Q
    ||||||||||||| ||||| ||||| |||| |||||| ||| |||| ||| ||||| |||| ||||||||    
T  256519 ttttgaaatcggggaaaactcaaactcatacccaaacacaaccaaagcggggaaaatccattaaattgag 256450  T

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Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 7978628 - 7978595
Alignment:
Q  2 cgtcccgtaaccgtattttgaaatcgggaaaaac 35  Q
    ||||||||| ||||||||||||||||||||||||    
T  7978628 cgtcccgtacccgtattttgaaatcgggaaaaac 7978595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 28079739 - 28079687
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaac 53  Q
    |||||||||| || | ||||||||||||| ||||||||||| |||| ||||||    
T  28079739 ccgtcccgtacccatgttttgaaatcggggaaaacccaaacccatacccaaac 28079687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 29199928 - 29199888
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaac 41  Q
    |||||||||| |||||||||||||||||| |||| ||||||    
T  29199928 ccgtcccgtacccgtattttgaaatcggggaaaatccaaac 29199888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 42908084 - 42907989
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgaggttgttttgg 96  Q
    |||||||||| |||||||||||||||||| ||||||||||| |||| |||||||||||||||| ||  |||| || |||||| ||||||| |||||    
T  42908084 ccgtcccgtacccgtattttgaaatcggggaaaacccaaactcatacccaaacccaatcaaattgggaaaaaaccgtcaaatcgaggttggtttgg 42907989  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 27063188 - 27063322
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgaggttgttttggacgg 100  Q
    |||||| ||| |||||||||||||||| | ||||| ||||| |||| ||||||||| ||||||| | ||||| || |||||| | ||||| |||||  ||    
T  27063188 ccgtcctgtacccgtattttgaaatcgaggaaaactcaaactcatacccaaacccagtcaaatcagggaaaatccgtcaaatcggggttggtttgggagg 27063287  T
Q  101 atacccataagcatgagttttgttgtcatgcctat 135  Q
     |||||||  ||| |||||||||||||||||||||    
T  27063288 gtacccatgggcacgagttttgttgtcatgcctat 27063322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 37103167 - 37103087
Alignment:
Q  4 tcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattg 84  Q
    ||||||| ||||||||||||||| |||||||| |||||  ||||||||||||||||||||||||||| | || ||||||||    
T  37103167 tcccgtacccgtattttgaaatcaggaaaaacacaaacttatatccaaacccaatcaaatcggagaagatccgtcaaattg 37103087  T

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Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 29014995 - 29014930
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcgg 66  Q
    |||||||||| |||||||||||||||||||||||| ||||| |||| | |||||||||||||||||    
T  29014995 ccgtcccgtacccgtattttgaaatcgggaaaaactcaaactcatacctaaacccaatcaaatcgg 29014930  T

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Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 22973438 - 22973503
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcgg 66  Q
    |||||||||| |||||||||||||||| | ||||||||||| |||| ||||||||| |||||||||    
T  22973438 ccgtcccgtacccgtattttgaaatcgtggaaaacccaaacccatacccaaacccagtcaaatcgg 22973503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 2 - 134
Target Start/End: Complemental strand, 30839176 - 30839043
Alignment:
Q  2 cgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcgg-agaaaacccatcaaattgaggttgttttggacgg 100  Q
    |||||| || ||||||||||||||| || ||||| ||||| |||| ||||||||| ||||||||| ||||||||| |||||| | ||||| ||||  |||    
T  30839176 cgtcccatacccgtattttgaaatcagggaaaactcaaactcatacccaaacccagtcaaatcggaagaaaacccgtcaaatcggggttggtttgagcgg 30839077  T
Q  101 atacccataagcatgagttttgttgtcatgccta 134  Q
     ||| |||   || | ||||||||||||||||||    
T  30839076 gtactcatggacacgggttttgttgtcatgccta 30839043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 39317045 - 39317178
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgaggttgttttggacgg 100  Q
    ||||||| || |||| ||||||||||| | ||||| || || |||||||||||||| ||||| ||| |||||||| |||||||||| ||| || || |||    
T  39317045 ccgtcccatacccgtgttttgaaatcgaggaaaactcatactcatatccaaacccagtcaaaacggggaaaacccgtcaaattgagtttggttcgggcgg 39317144  T
Q  101 atacccataagcatgagttttgttgtcatgccta 134  Q
    ||| ||   || |||| |||||||| ||||||||    
T  39317145 ataaccgcgagtatgaattttgttgccatgccta 39317178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 45380157 - 45380218
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaa 62  Q
    ||||||| || ||||||||||||||||||||||||||| || |||||||||||||| |||||    
T  45380157 ccgtcccatacccgtattttgaaatcgggaaaaacccatacccatatccaaacccagtcaaa 45380218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 135
Target Start/End: Original strand, 17851925 - 17852036
Alignment:
Q  24 atcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgaggttgttttggacggatacccataagcatgagttttgt 123  Q
    |||||| |||||||| || |||| ||||||||| ||||| ||||||||| ||||||||||| | ||| || || ||| || ||| ||| ||| |||||||    
T  17851925 atcggggaaaacccatacccatacccaaacccagtcaaaacggagaaaatccatcaaattgggtttggttcgggcgggtaaccacaagtatgggttttgt 17852024  T
Q  124 tgtcatgcctat 135  Q
    || |||||||||    
T  17852025 tgccatgcctat 17852036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 134
Target Start/End: Original strand, 31426069 - 31426192
Alignment:
Q  12 ccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaa-cccatcaaattgaggttgttttggacggatacccataa 110  Q
    ||||||||| |||||||| |||||||||||  ||| | ||||||| |||||| | | |||| ||| |||||| ||||||| |||||||||||||| || |    
T  31426069 ccgtatttttaaatcggggaaaacccaaaccaataccaaaacccagtcaaattgaaaaaaaacccgtcaaatcgaggttggtttggacggatacctatga 31426168  T
Q  111 gcatgagttttgttgtcatgccta 134  Q
     || | ||||||||| ||||||||    
T  31426169 acacgggttttgttgccatgccta 31426192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 37218055 - 37218189
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgaggttgttttggacgg 100  Q
    |||||||||| | || ||||||||| ||  ||||| ||||| |||| ||||||||| ||||| ||| ||||||||||||||||||| ||| || ||  ||    
T  37218055 ccgtcccgtacctgtgttttgaaataggataaaactcaaactcatacccaaacccagtcaaaacggggaaaacccatcaaattgagtttggttcgggtgg 37218154  T
Q  101 atacccataagcatgagttttgttgtcatgcctat 135  Q
     || ||    | |||||||||||||||||||||||    
T  37218155 gtatccgctggtatgagttttgttgtcatgcctat 37218189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 18684024 - 18684089
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcgg 66  Q
    |||||||||| |||||||||||||||||| ||||||| ||| |||| ||||||| | |||||||||    
T  18684024 ccgtcccgtacccgtattttgaaatcggggaaaacccgaacccatacccaaacctagtcaaatcgg 18684089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 24753214 - 24753346
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgaggttgttttggacgg 100  Q
    ||||||| || |||| |||||| |||||||||| |||| || |||||||||||||| ||||| ||||||||| || |||||||||  ||| || ||||||    
T  24753214 ccgtcccatacccgtgttttgagatcgggaaaa-cccatacccatatccaaacccagtcaaaacggagaaaatccgtcaaattgaatttggttcggacgg 24753312  T
Q  101 atacccataagcatgagttttgttgtcatgccta 134  Q
     || |||   | ||| ||||||||| ||||||||    
T  24753313 gtaaccacgggtatgggttttgttgccatgccta 24753346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 10072527 - 10072599
Alignment:
Q  12 ccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattg 84  Q
    |||| ||||||||||||| |||||||| || |||| ||||||||| ||||| ||| |||||||| ||||||||    
T  10072527 ccgtgttttgaaatcggggaaaacccatacccatacccaaacccagtcaaaacggggaaaacccgtcaaattg 10072599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 15 - 131
Target Start/End: Original strand, 29157415 - 29157531
Alignment:
Q  15 tattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgaggttgttttggacggatacccataagcat 114  Q
    |||| |||||||||| |||| |||||  |||| ||||||||  |||||| || |||||||| |||||| |  |||| ||||||||| |||||||  |||     
T  29157415 tattatgaaatcggggaaaatccaaaaccatacccaaaccctgtcaaattggtgaaaacccgtcaaatcggagttggtttggacgggtacccattggcac 29157514  T
Q  115 gagttttgttgtcatgc 131  Q
    | |||||||||||||||    
T  29157515 gggttttgttgtcatgc 29157531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 38139819 - 38139752
Alignment:
Q  17 ttttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattg 84  Q
    ||||||||| ||| |||||||| || |||||||||||||| ||||| ||| ||||| |||||||||||    
T  38139819 ttttgaaattggggaaaacccatacccatatccaaacccagtcaaaacggggaaaatccatcaaattg 38139752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 43507511 - 43507578
Alignment:
Q  17 ttttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattg 84  Q
    ||||||||||||| |||||||| ||  ||| ||||||||| ||||| ||| |||||||||||||||||    
T  43507511 ttttgaaatcggggaaaacccatacttatacccaaacccagtcaaaacggggaaaacccatcaaattg 43507578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 8906616 - 8906551
Alignment:
Q  17 ttttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaat 82  Q
    ||||||||||||  ||||| ||||| |||| ||||| ||||||||| |||||||||||| ||||||    
T  8906616 ttttgaaatcggagaaaactcaaacccatacccaaatccaatcaaagcggagaaaacccgtcaaat 8906551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 12980427 - 12980512
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgag 86  Q
    ||||||| || |||| ||||||||||||| |||||| |||| |||| ||||||||| |||||  || |||||||| | ||||||||    
T  12980427 ccgtcccatacccgtgttttgaaatcggggaaaaccaaaacccatacccaaacccagtcaaaatggggaaaacccgttaaattgag 12980512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 27896502 - 27896429
Alignment:
Q  17 ttttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgaggttg 90  Q
    |||||||||  || ||||||||||| |||| ||||||||||||||| ||   |||||||||||||||| |||||    
T  27896502 ttttgaaataagggaaaacccaaacccatacccaaacccaatcaaagcgagaaaaacccatcaaattggggttg 27896429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 2472044 - 2472096
Alignment:
Q  12 ccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatc 64  Q
    ||||||| ||||||||| |||||| ||||| |||| |||||||||||||||||    
T  2472044 ccgtattatgaaatcggaaaaaactcaaactcatacccaaacccaatcaaatc 2472096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 44658499 - 44658427
Alignment:
Q  12 ccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattg 84  Q
    |||| ||||||||||||||||||| || || |||| ||||||||| ||||| ||  |||||||| ||||||||    
T  44658499 ccgtgttttgaaatcgggaaaaactcatacccatacccaaacccagtcaaaacgaggaaaacccgtcaaattg 44658427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 18125271 - 18125188
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattg 84  Q
    ||||||| || |||| ||| || ||||||||||||||| || ||||  |||||||| ||||| ||| |||||||| ||||||||    
T  18125271 ccgtcccatacccgtgtttcgagatcgggaaaaacccatactcatacacaaacccagtcaaaacggggaaaacccgtcaaattg 18125188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 37196036 - 37195921
Alignment:
Q  17 ttttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgaggttgttttggacggatacccataagcatga 116  Q
    ||||||||||||| |||| ||| || |||| ||||||| ||||||| | | ||||| || |||||||||| ||| ||||| |||||| |||   | |||     
T  37196036 ttttgaaatcggggaaaatccatacccatacccaaacctaatcaaaacagggaaaatccgtcaaattgagtttggtttgggcggataaccacgggtatgg 37195937  T
Q  117 gttttgttgtcatgcc 132  Q
     |||||||||||||||    
T  37195936 attttgttgtcatgcc 37195921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 44845178 - 44845107
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaa 72  Q
    |||||||||| ||||||| |||||||||| ||||||||||| |||| | |||| || ||||| |||| ||||    
T  44845178 ccgtcccgtacccgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaaacggaaaaaa 44845107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 45885808 - 45885725
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattg 84  Q
    ||||||| || |||| |||||| |||||| ||||| || || |||| ||||||||| ||||| |||||||||||| | ||||||    
T  45885808 ccgtcccatacccgtgttttgagatcggggaaaactcatacccatacccaaacccagtcaaaacggagaaaacccgttaaattg 45885725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 32546242 - 32546310
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacata---tccaaacccaatcaaatcgg 66  Q
    |||| ||||| ||||||||||||||||||||||| |||||| ||||    ||||||||| |||||||||    
T  32546242 ccgttccgtacccgtattttgaaatcgggaaaaatccaaacccatacgccccaaacccagtcaaatcgg 32546310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 3157133 - 3157206
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacc 74  Q
    ||||||| || || ||||||||||||||| |||||| |||| |||| ||||||| | ||||| ||| |||||||    
T  3157133 ccgtcccatacccatattttgaaatcggggaaaacctaaacccatacccaaaccaagtcaaagcggggaaaacc 3157206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 4101608 - 4101677
Alignment:
Q  17 ttttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgag 86  Q
    ||||||||||  | ||||||||||| | |||||||||| | ||||| |||  ||||||||||||||||||    
T  4101608 ttttgaaatcatggaaaacccaaacccttatccaaacctagtcaaagcgggaaaaacccatcaaattgag 4101677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 38152953 - 38153021
Alignment:
Q  17 ttttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgag 86  Q
    ||||||||||||| |||||||| || |||| ||||||||| ||||| ||| ||||| || ||||||||||    
T  38152953 ttttgaaatcggggaaaacccatacccatacccaaacccagtcaaaacgg-gaaaatccgtcaaattgag 38153021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 44985944 - 44985879
Alignment:
Q  18 tttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaatt 83  Q
    |||||||||||  |||||||| |  |||| ||||||||||||||| ||||||||| || |||||||    
T  44985944 tttgaaatcggagaaaacccatatccatacccaaacccaatcaaaacggagaaaatccgtcaaatt 44985879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 37579322 - 37579394
Alignment:
Q  12 ccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattg 84  Q
    |||| ||| |||||||||||||| |||||| |||| ||||||| | ||||| ||| |||||||| || |||||    
T  37579322 ccgtgtttcgaaatcgggaaaaatccaaacccatacccaaacctagtcaaaacggggaaaacccgtctaattg 37579394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 128164 - 128059
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaa-tcggagaaaacccatcaaattgaggttgttttggacg 99  Q
    |||||||||| ||||||| |||||| || |||||||||||| ||||  |||||||||||||| ||| | |||||||| ||||| ||||||| |||||||     
T  128164 ccgtcccgtacccgtattatgaaattggaaaaaacccaaactcatactcaaacccaatcaaattcgaaaaaaacccaccaaatcgaggttggtttggaca 128065  T
Q  100 gatacc 105  Q
    ||||||    
T  128064 gatacc 128059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 105512 - 105431
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaat 82  Q
    |||||||||| |||||||  |||||||| ||||| |||| | ||||  ||||||||||||||||| | ||||||||||||||    
T  105512 ccgtcccgtacccgtattaagaaatcggaaaaaatccaatcccatactcaaacccaatcaaatcgaaaaaaacccatcaaat 105431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 19104869 - 19104797
Alignment:
Q  12 ccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattg 84  Q
    |||| ||| ||||||||| ||||||||||| |||| ||||||||||||||| |||| ||||||||||||||||    
T  19104869 ccgtgtttggaaatcggggaaaacccaaactcatacccaaacccaatcaaaacggaaaaaacccatcaaattg 19104797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 38342562 - 38342500
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaat 63  Q
    |||||||||| ||||||||| |||||||| ||||| ||||| |||||||||||||||||||||    
T  38342562 ccgtcccgtatccgtattttaaaatcggggaaaactcaaacccatatccaaacccaatcaaat 38342500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 4427970 - 4428103
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgaggttgttttggacgg 100  Q
    ||||||| || ||||||| |||| ||||| ||||||||||| ||||  ||||  || |||||| ||  ||||||| | |||| | ||||| |||||||||    
T  4427970 ccgtcccttacccgtattatgaagtcggggaaaacccaaacccatactcaaattcagtcaaattgggaaaaacccgttaaatcggggttgatttggacgg 4428069  T
Q  101 atacccataagcatgagttttgttgtcatgccta 134  Q
    |||||||| |||| | |||||||| |||||||||    
T  4428070 atacccatgagcacgggttttgttttcatgccta 4428103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 30978976 - 30979033
Alignment:
Q  6 ccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaat 63  Q
    ||||| |||||||||||||||||||||||||||||| ||||| |||||||| ||||||    
T  30978976 ccgtacccgtattttgaaatcgggaaaaacccaaactcatattcaaacccagtcaaat 30979033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 31942212 - 31942095
Alignment:
Q  17 ttttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgaggttgttttggacggatacccataagcatga 116  Q
    ||||||||||| | | ||||||||| |||||||||||||| ||||| |||  |||||||||||||||||| ||| ||||| ||| || |||   | |||     
T  31942212 ttttgaaatcgaggataacccaaacccatatccaaacccagtcaaagcgggaaaaacccatcaaattgagtttggtttgggcgggtaaccacgggtatgg 31942113  T
Q  117 gttttgttgtcatgccta 134  Q
    ||||||||||||| ||||    
T  31942112 gttttgttgtcataccta 31942095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 37106738 - 37106871
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgaggttgttttggacgg 100  Q
    ||||||| || |||| ||||||||||||| |||||||| || |||| |||||| || ||||| ||| |||||||| |||||||| | ||| || || |||    
T  37106738 ccgtcccatacccgtgttttgaaatcggggaaaacccatacccatacccaaactcagtcaaaacggggaaaacccgtcaaattgggtttggttcgggcgg 37106837  T
Q  101 atacccataagcatgagttttgttgtcatgccta 134  Q
     || ||   || ||||||||||||||||||||||    
T  37106838 gtaaccgcgagtatgagttttgttgtcatgccta 37106871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 134
Target Start/End: Original strand, 26755816 - 26755919
Alignment:
Q  31 aaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgaggttgttttggacggatacccataagcatgagttttgttgtcatg 130  Q
    ||||||||||| |||| ||||||||| |||||||||  ||||||| |||||| | ||||| ||||| | | |||||||  ||| | ||||||||||||||    
T  26755816 aaaacccaaactcatacccaaacccagtcaaatcgggaaaaacccgtcaaatcggggttggtttgggcaggtacccatgggcacgggttttgttgtcatg 26755915  T
Q  131 ccta 134  Q
    ||||    
T  26755916 ccta 26755919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 7314679 - 7314606
Alignment:
Q  13 cgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgag 86  Q
    |||||||| |||||||| |||||||| || |||||||||||||| ||||| ||| ||||| || ||||||||||    
T  7314679 cgtattttaaaatcggggaaaacccatacccatatccaaacccagtcaaaacggggaaaatccgtcaaattgag 7314606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 134
Target Start/End: Original strand, 12341662 - 12341779
Alignment:
Q  17 ttttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgaggttgttttggacggatacccataagcatga 116  Q
    ||||||||||||| |||||||| || |||| |||||| || ||||| ||| |||||||| |||||||| | ||| || ||||||||| ||    | ||||    
T  12341662 ttttgaaatcggggaaaacccatacccatacccaaactcagtcaaaacggggaaaacccgtcaaattgggtttggttcggacggataaccgcgggtatga 12341761  T
Q  117 gttttgttgtcatgccta 134  Q
    ||||||||| ||||||||    
T  12341762 gttttgttgccatgccta 12341779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 24051655 - 24051586
Alignment:
Q  13 cgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaat 82  Q
    |||||||| |||||||  ||| ||||||| |||| ||||||||||| ||||||||||||| |||||||||    
T  24051655 cgtattttaaaatcggagaaatcccaaacccatacccaaacccaattaaatcggagaaaatccatcaaat 24051586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 37472802 - 37472717
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgag 86  Q
    ||||||| || |||| ||||||||||||| |||| ||| || |||| ||||||||| ||||| ||| |||||||| ||||||||||    
T  37472802 ccgtcccatacccgtgttttgaaatcggggaaaatccatactcatacccaaacccagtcaaaacggggaaaacccgtcaaattgag 37472717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 24414175 - 24414092
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattg 84  Q
    ||||||| || |||| |||||| |||||| |||||| | || |||| ||||||||||||||| ||| |||||||| ||||||||    
T  24414175 ccgtcccatacccgtgttttgagatcggggaaaaccgatacccatacccaaacccaatcaaaacggggaaaacccgtcaaattg 24414092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 44746136 - 44746069
Alignment:
Q  17 ttttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattg 84  Q
    ||||||||||||| ||||||||||  |||| |||||| |||||||| ||| |||||||| ||||||||    
T  44746136 ttttgaaatcggggaaaacccaaatccatacccaaactcaatcaaaacggggaaaacccgtcaaattg 44746069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 134
Target Start/End: Complemental strand, 6027897 - 6027811
Alignment:
Q  48 ccaaacccaatcaaatcggagaaaacccatcaaattgaggttgttttggacggatacccataagcatgagttttgttgtcatgccta 134  Q
    ||||||||||||||| ||| |||||||| |||||||| | ||| || || |||||| |||  || ||| ||||||||||||||||||    
T  6027897 ccaaacccaatcaaaacggggaaaacccgtcaaattgggtttggttcgggcggataaccacgagtatgggttttgttgtcatgccta 6027811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 18106151 - 18106029
Alignment:
Q  12 ccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaa-ttgaggttgttttggacggatacccataa 110  Q
    |||| |||||| |||||| |||||||| || |||||||||||||| ||||| ||| ||||| || ||||| ||||| ||| || || ||| || ||| |     
T  18106151 ccgtgttttgagatcggggaaaacccatacccatatccaaacccagtcaaaacggggaaaatccgtcaaaattgagtttgattcgggcgggtaaccacat 18106052  T
Q  111 gcatgagttttgttgtcatgcct 133  Q
      |||||||||||||||||||||    
T  18106051 atatgagttttgttgtcatgcct 18106029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 44057929 - 44058061
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgaggttgttttggacgg 100  Q
    |||||||||| | ||||||||||||| || |||| |||||| | || ||||||||| |||||| ||| ||||| | |||||| | ||||| |||||   |    
T  44057929 ccgtcccgtaccggtattttgaaatcagggaaaatccaaactcgtacccaaacccagtcaaattggaaaaaactcgtcaaatcggggttggtttgggatg 44058028  T
Q  101 atacccataagcatgagttttgttgtcatgccta 134  Q
     ||||||||  |||| ||||||||| ||||||||    
T  44058029 gtacccatagacatg-gttttgttgccatgccta 44058061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 3547212 - 3547305
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgaggttgttttggacgg 100  Q
    |||||||||| ||||||||||||||||| ||||||||||      ||||| |||| ||||||| |  ||||| || ||||||||||||||  ||||||||    
T  3547212 ccgtcccgtacccgtattttgaaatcggtaaaaacccaa------atccatacccgatcaaattgaggaaaatccgtcaaattgaggttggcttggacgg 3547305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 10212454 - 10212513
Alignment:
Q  3 gtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaa 62  Q
    ||||||||||||| ||| ||||||||| ||||||||||| |||| | ||||||| |||||    
T  10212454 gtcccgtaaccgtgtttggaaatcggggaaaacccaaactcataccaaaacccagtcaaa 10212513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 42102690 - 42102615
Alignment:
Q  38 aaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgaggttgttttggacggatacccataagca 113  Q
    |||| |||| ||||||||||||||||||| ||||| ||||||||| |  |||||||| | ||| ||||||| ||||    
T  42102690 aaacccatacccaaacccaatcaaatcggggaaaatccatcaaatcggtgttgttttaggcgggtacccatgagca 42102615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 8915980 - 8915845
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgaggttgttttggacgg 100  Q
    ||||||| || |||| |||||| |||| ||||| |||| || ||||||||||| || ||||| |||  |||| || |||||||||  ||| ||||| |||    
T  8915980 ccgtcccatacccgtgttttgagatcgagaaaa-cccatacccatatccaaactcagtcaaaacgggaaaaatccgtcaaattgaatttgatttgggcgg 8915882  T
Q  101 atacccataagcatgagttttgttgtcatgcctattt 137  Q
    ||| ||| | | ||| ||||||||| ||| |||||||    
T  8915881 ataaccacaggtatgggttttgttgccatacctattt 8915845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 12193870 - 12193787
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatc-aaatcggagaaaacccatcaaattg 84  Q
    ||||||| || |||| || |||||||||||||||| || || |||| ||||||||| || |||||||| ||||||| ||||||||    
T  12193870 ccgtcccatacccgtgttctgaaatcgggaaaaacacatactcatacccaaacccagtcaaaatcgga-aaaacccgtcaaattg 12193787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 22900841 - 22900885
Alignment:
Q  2 cgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacata 46  Q
    |||||| || |||| ||||||||||||||||||||||||| ||||    
T  22900841 cgtcccatacccgtgttttgaaatcgggaaaaacccaaacccata 22900885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 3014 - 3081
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggag 68  Q
    |||||| ||| |||||||||||||||||| ||||||||||| |||| ||||||||| |||||||||||    
T  3014 ccgtcctgtacccgtattttgaaatcggggaaaacccaaactcatacccaaacccagtcaaatcggag 3081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 14903 - 14972
Alignment:
Q  12 ccgtattttgaaatcgggaaaaacccaaacacatatcc-aaacccaatcaaatcggagaaaacccatcaa 80  Q
    |||| ||||||||||||| ||||||||||| |||| || ||||||||||||| |||||||||||| ||||    
T  14903 ccgtgttttgaaatcggggaaaacccaaactcataccctaaacccaatcaaagcggagaaaacccgtcaa 14972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 211409 - 211476
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggag 68  Q
    ||||| |||| |||||||||||||||||  ||||||||||| |||| |||||| || |||||||||||    
T  211409 ccgtctcgtacccgtattttgaaatcggagaaaacccaaacccatacccaaactcagtcaaatcggag 211476  T

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Target: scaffold0036 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 33438 - 33494
Alignment:
Q  1 ccgtcccgtaaccgtattttgaaatcgggaaaaacccaaacacatatccaaacccaa 57  Q
    ||||||| || |||| ||||||||||||| ||||||||||| |||| ||||||||||    
T  33438 ccgtcccatacccgtgttttgaaatcggggaaaacccaaacccatacccaaacccaa 33494  T

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Target: scaffold0014 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 130
Target Start/End: Complemental strand, 14206 - 14098
Alignment:
Q  22 aaatcgggaaaaacccaaacacatatccaaacccaatcaaatcggagaaaacccatcaaattgaggttgttttggacggatacccataagcatgagtttt 121  Q
    |||||||| ||||| ||||| |||| |||||||||| |||| |||  ||||||| |||||||| | ||| |||||  || || |||  || |||||||||    
T  14206 aaatcggggaaaactcaaactcatacccaaacccaaacaaaacgggaaaaacccgtcaaattgggtttggtttgggtgggtaaccacgagtatgagtttt 14107  T
Q  122 gttgtcatg 130  Q
    |||||||||    
T  14106 gttgtcatg 14098  T

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