View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7645_low_8 (Length: 389)
Name: NF7645_low_8
Description: NF7645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7645_low_8 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 44603991 - 44604385
Alignment:
| Q |
1 |
ttagcagagattgtctgtctcttcctcgcaagttacttgttcttgttcatttgaatggctcttc------agcttcaactacagcttcctgcttctattg |
94 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
44603991 |
ttagcagagattgtctgtctcttcctcgcaagttacttgttcttgttcatttgaatggctcttcagcttcagcttcaactacagcttcctgcttctattg |
44604090 |
T |
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| Q |
95 |
ggcgcgtgaaatcaataacgtgcccaccacgtgcacgaaaagccacaaccttcgctactctatcacaacctcgaagtgataccgtgaactgggtggaagc |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44604091 |
ggcgcgtgaaatcaataacgtgcccaccacgtgcacgaaaagccacaaccttcgctactctatcacaacctcgaagtgataccgtgaactgggtggaagc |
44604190 |
T |
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| Q |
195 |
aacttcaagcttcttcgaccaagacaaacgacccatcatgttatttgatggtaaataataatcaaaacccttcttctttgtattttcaatggaacaaacg |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44604191 |
aacttcaagcttcttcgaccaagacaaacgacccatcatgttatttgatggtaaataataatcaaaacccttcttctttgtattttcaatggaacaaacg |
44604290 |
T |
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| Q |
295 |
tctttttgatgtatgtttttgttgattcaattgtttattgtgatgagtttgacatacaggggtgtgtaacttgtgtaatggaggcgttaagtttg |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44604291 |
tctttttgatgtatgtttttgttgattcaattgtttattgttatgagtttgacatacaggggtgtgtaacttgtgtaatggaggcgttaagtttg |
44604385 |
T |
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