View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7645_low_9 (Length: 364)
Name: NF7645_low_9
Description: NF7645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7645_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 11368708 - 11369059
Alignment:
| Q |
1 |
cttttaatacagctactcaaatgagaattgaagattacgtgaatttcttcataactttggtctccaagttcaatgtttattatggtaagttgcaatgatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
11368708 |
cttttaatacagctactcaaatgagaattgaagattacgtgaatttcttcataactttggtctccaagctcaatgtttattatggtaagttacaatgatt |
11368807 |
T |
|
| Q |
101 |
aagtttttgttttgtctaccctgttcaatgtgaatgataataaaggattggatgtaggttaaaattagcaatgcaagatttcttatttcagtttttaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11368808 |
aagtttttgttttgtctaccctgttcaatgtgaatgataataaaggattggatgtaggttaaaattagcaatgcaagatttcttatttcagtttttaaaa |
11368907 |
T |
|
| Q |
201 |
attagttgtttga-ccgctctctttatgaatgatcataaatgattggacgtcgggttcattgctaactttcatcctcaccaaagctaagtttcagtctgc |
299 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11368908 |
attagttgtttgatccgccctctttatgaatgatcataaatgattggacgtcgggttcattgctaactttcatcctcaccaaagctaagtttcagtctgc |
11369007 |
T |
|
| Q |
300 |
cactctttttaaccactggataacaaaattagatagtcgtattcacatgttc |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11369008 |
cactctttttaaccactggataacaaaattagatagtcgtattcacatgttc |
11369059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 289 - 351
Target Start/End: Original strand, 11369062 - 11369124
Alignment:
| Q |
289 |
tttcagtctgccactctttttaaccactggataacaaaattagatagtcgtattcacatgttc |
351 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
11369062 |
tttcagtctgccactctttctaaccactagataacaaaattagatagtcgtattcacatgttc |
11369124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University