View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7646_low_3 (Length: 324)
Name: NF7646_low_3
Description: NF7646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7646_low_3 |
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| [»] scaffold1075 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: scaffold1075 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: scaffold1075
Description:
Target: scaffold1075; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 2950 - 2626
Alignment:
| Q |
1 |
ggacaggcaagaggctatctacaaaagatgaccctccaatctggaagaagaaaagcatattctttgaacttccatattggaaggacaatcttctgcgtca |
100 |
Q |
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| T |
2950 |
ggacaggcaagaggcaatctacaaaagatgaccctccaatctggaagaagaaaagcatattctttgaacttccatattggaaggacaatcttctgcgtca |
2851 |
T |
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| Q |
101 |
taatcttgacccgatgcatattgagaaaaatgtgttggataatatcatatatactttgcttaacgatagttcaaagagtaaagaccatgttgatgctcga |
200 |
Q |
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| T |
2850 |
taatcttgacccgatgcatatcgagaaaaatgtgttggataatatcatatatactttgcttaacgatagttcaaagagtaaagaccatgttgatgctcgt |
2751 |
T |
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| Q |
201 |
agagaccttgaagttatgggcataagatctga-ctttggtgcaatgaaaatggaaaaatttctccgacaatttttactttaactggtaaaagtaagaggg |
299 |
Q |
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| T |
2750 |
agagaccttgaagttatgggcataagatctgacctttggtgcaatgaaaatggaaaaatttctccggcaatttttactttgactggtaaaagtaagaggg |
2651 |
T |
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| Q |
300 |
aatttttaacaattttaaagaatat |
324 |
Q |
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| T |
2650 |
attttttaacaattttaaagaatat |
2626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 17006147 - 17006471
Alignment:
| Q |
1 |
ggacaggcaagaggctatctacaaaagatgaccctccaatctggaagaagaaaagcatattctttgaacttccatattggaaggacaatcttctgcgtca |
100 |
Q |
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| T |
17006147 |
ggacaggcaagaggcaatctacaaaagatgaccctccaatctagaagaagaaaagcatattctttgaacttccatattggaaggacaatcttttgcgtca |
17006246 |
T |
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| Q |
101 |
taatcttgacccgatgcatattgagaaaaatgtgttggataatatcatatatactttgcttaacgatagttcaaagagtaaagaccatgttgatgctcga |
200 |
Q |
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| T |
17006247 |
taatcttgacccgatgcatatcgagaaaaatgtgttggataatatcatatatactttgcttaacgatagttcaaagaataaagaccatgttgatgctcga |
17006346 |
T |
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| Q |
201 |
agagaccttgaagttatgggcataagatctga-ctttggtgcaatgaaaatggaaaaatttctccgacaatttttactttaactggtaaaagtaagaggg |
299 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
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| T |
17006347 |
agagaccttgaagttatgggcataagatctgacctttggtgcaatgaaaatggaaaaatttctccgacaatttttactttgactggtaaatgtaagaggg |
17006446 |
T |
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| Q |
300 |
aatttttaacaattttaaagaatat |
324 |
Q |
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| T |
17006447 |
aatttttaacaattttaaagaatat |
17006471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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