View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7648_high_4 (Length: 559)
Name: NF7648_high_4
Description: NF7648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7648_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 506; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 10 - 543
Target Start/End: Original strand, 41403094 - 41403626
Alignment:
| Q |
10 |
caccgcacacacggcagcagccaaaataattcctctcttcactaaaacttcatttataaacttcaaattagcattggaaacatcggttttcgctcgaaaa |
109 |
Q |
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| T |
41403094 |
caccccacaaacagcagcagccaaaataattcctctcttcactaaaacttcatttataaacttcaaattagcatcggaaacatcggttttcgctcgtaaa |
41403193 |
T |
|
| Q |
110 |
caatcactatcactaccactaccaatacacttcactttcaagctagctccaccaactaacttcaaattttttccataacttgaaagatgaaagcttttac |
209 |
Q |
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| T |
41403194 |
caatcactatcactaccactaccaatacacttcactttcaagctagctccaccaactaacttcaaattttttccataacttgaaagatgaaagcttttac |
41403293 |
T |
|
| Q |
210 |
aagtgaaaggaccaacacaatttgacacaataggaaaagggtatctaccatttgtacccaaaaccttcattggcattctctttgtacgattctcatgcac |
309 |
Q |
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| T |
41403294 |
aagtgaaaggaccaacacaatttgacacaataggaaaagggtatctaccatttgtacccaaaaccttcattggcattctctttgtacgattctcatgcac |
41403393 |
T |
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| Q |
310 |
agggtaaaacaatttcgaacccgaattgaaaactcgatgacccagagcccatgattcgagtgtcattgctaaaacactaaaatcataacaccccacaagc |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41403394 |
agggtaaaacaatttcgaacccgaattgaaaactcgatgacccagagcccatgattcgagtgtcattgctaaaacactaaaatcataacaccccacaagc |
41403493 |
T |
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| Q |
410 |
taaaaatcgaaattttatgcaaaaagaagaagctttggaaaaaaccgaacttggaatattttgctgaattgtgatgaaagtggttatgcgatgcaaccga |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41403494 |
taaaaatcgaaattttatgcaaaaagaagaagctttgg-aaaaaccgaacttggaatattttgctgaattgtgatgaaagtggttatgcgatgcaaccga |
41403592 |
T |
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| Q |
510 |
ggaaggtgaaaaacaatgaagaaagtgtatatac |
543 |
Q |
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| T |
41403593 |
ggaaggtgaaaaacaatgaagaaagtgtatatac |
41403626 |
T |
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