View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7648_high_6 (Length: 532)

Name: NF7648_high_6
Description: NF7648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7648_high_6
NF7648_high_6
[»] chr4 (3 HSPs)
chr4 (137-427)||(7841955-7842242)
chr4 (1-72)||(7841838-7841909)
chr4 (423-477)||(7842265-7842319)
[»] chr7 (4 HSPs)
chr7 (325-427)||(16663719-16663821)
chr7 (325-427)||(17638079-17638181)
chr7 (423-516)||(16663844-16663937)
chr7 (423-516)||(17638204-17638297)
[»] chr8 (4 HSPs)
chr8 (222-336)||(37306897-37307011)
chr8 (380-420)||(37306823-37306863)
chr8 (450-516)||(3417782-3417853)
chr8 (162-203)||(3417860-3417901)
[»] chr1 (2 HSPs)
chr1 (138-203)||(22419922-22419987)
chr1 (92-203)||(33504552-33504665)
[»] chr5 (1 HSPs)
chr5 (162-203)||(4085382-4085423)
[»] chr6 (1 HSPs)
chr6 (139-203)||(12345621-12345684)


Alignment Details
Target: chr4 (Bit Score: 111; Significance: 9e-56; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 137 - 427
Target Start/End: Original strand, 7841955 - 7842242
Alignment:
Q  137 tgatctcaattacacatccacaatgattctggatttgttgttcaccgaaaataaactaccaattca-annnnnnnncctttaa-taccaaataattaaga 234  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||| || |||||| ||  |        ||||||  || |||||||||||||    
T  7841955 tgatctcaattacacatccacaatgattctggatttgttgtttacggaaaatcaattaccaaatcctattttttttcctttatctaacaaataattaaga 7842054  T
Q  235 aacaagtgtgtgttgaaattgatatacactttcgttgatacatactttggcatgagaaactaacgaagaatgcaacgcctatcaaaagcgataactatta 334  Q
    ||||||| ||||||||||||||  ||| |||||||||| || ||||| |||||||||||||||| |||||   ||      ||||||||||||| |||||    
T  7842055 aacaagtctgtgttgaaattgaattacgctttcgttgacacgtacttcggcatgagaaactaacaaagaaactaa------tcaaaagcgataattatta 7842148  T
Q  335 acaaataaaacatagttcttagaaaggagaataaa-gaagaaattagaatgtgagagtgaaacgtactatgaatctgaaacaaccttgattttg 427  Q
    ||| |||||||||||||||||||| | |||| ||| ||| | ||||||||||||||||||||| |||||||||||||||||| |||||||||||    
T  7842149 acatataaaacatagttcttagaacgaagaagaaaagaaaatattagaatgtgagagtgaaacatactatgaatctgaaacatccttgattttg 7842242  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 7841838 - 7841909
Alignment:
Q  1 tctcaacaatctattttattaaatccaaaggctataagtgtttgataaattaacagagatggaccttttctc 72  Q
    ||||||| |||||||||||||||||||||| |||||| |||||||||| || ||| || || ||||||||||    
T  7841838 tctcaactatctattttattaaatccaaagactataattgtttgataatttgacacagctgcaccttttctc 7841909  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 423 - 477
Target Start/End: Original strand, 7842265 - 7842319
Alignment:
Q  423 ttttgaagatcaaccaattcagttaaatttaaagggttttcattctgtaaaaaca 477  Q
    |||| ||||| |||||||||| ||||||||||| |||||||||||| | ||||||    
T  7842265 ttttaaagattaaccaattcaattaaatttaaaaggttttcattctatcaaaaca 7842319  T

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Target: chr7 (Bit Score: 99; Significance: 1e-48; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 325 - 427
Target Start/End: Original strand, 16663719 - 16663821
Alignment:
Q  325 ataactattaacaaataaaacatagttcttagaaaggagaataaagaagaaattagaatgtgagagtgaaacgtactatgaatctgaaacaaccttgatt 424  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16663719 ataactattaacaaataaaacatagttcttagaaaggagaataaacaagaaattagaatgtgagagtgaaacgtactatgaatctgaaacaaccttgatt 16663818  T
Q  425 ttg 427  Q
    |||    
T  16663819 ttg 16663821  T

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Target: chr7; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 325 - 427
Target Start/End: Original strand, 17638079 - 17638181
Alignment:
Q  325 ataactattaacaaataaaacatagttcttagaaaggagaataaagaagaaattagaatgtgagagtgaaacgtactatgaatctgaaacaaccttgatt 424  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17638079 ataactattaacaaataaaacatagttcttagaaaggagaataaacaagaaattagaatgtgagagtgaaacgtactatgaatctgaaacaaccttgatt 17638178  T
Q  425 ttg 427  Q
    |||    
T  17638179 ttg 17638181  T

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Target: chr7; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 423 - 516
Target Start/End: Original strand, 16663844 - 16663937
Alignment:
Q  423 ttttgaagatcaaccaattcagttaaatttaaagggttttcattctgtaaaaacaagggggttttcaatctatcaaaacaaaaagattgattat 516  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16663844 ttttgaagatcaaccaattcaattaaatttaaagggttttcattctgtaaaaacaagggggttttcaatctatcaaaacaaaaagattgattat 16663937  T

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Target: chr7; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 423 - 516
Target Start/End: Original strand, 17638204 - 17638297
Alignment:
Q  423 ttttgaagatcaaccaattcagttaaatttaaagggttttcattctgtaaaaacaagggggttttcaatctatcaaaacaaaaagattgattat 516  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17638204 ttttgaagatcaaccaattcaattaaatttaaagggttttcattctgtaaaaacaagggggttttcaatctatcaaaacaaaaagattgattat 17638297  T

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Target: chr8 (Bit Score: 67; Significance: 2e-29; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 222 - 336
Target Start/End: Complemental strand, 37307011 - 37306897
Alignment:
Q  222 caaataattaagaaacaagtgtgtgttgaaattgatatacactttcgttgatacatactttggcatgagaaactaacgaagaatgcaacgcctatcaaaa 321  Q
    ||||||| |||| || |||| ||||||||||||||||||| |||||||||| || ||||| ||||||| |||||||||||||| ||||||||||||||||    
T  37307011 caaataactaaggaaaaagtctgtgttgaaattgatatacgctttcgttgacacgtacttcggcatgaaaaactaacgaagaacgcaacgcctatcaaaa 37306912  T
Q  322 gcgataactattaac 336  Q
    ||||| | |||||||    
T  37306911 gcgatgattattaac 37306897  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 420
Target Start/End: Complemental strand, 37306863 - 37306823
Alignment:
Q  380 gaatgtgagagtgaaacgtactatgaatctgaaacaacctt 420  Q
    ||||||||||||||||||||||||||| |||||||| ||||    
T  37306863 gaatgtgagagtgaaacgtactatgaaactgaaacagcctt 37306823  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 450 - 516
Target Start/End: Complemental strand, 3417853 - 3417782
Alignment:
Q  450 tttaaagggttttcattctgt----aaaaacaaggg-ggttttcaatctatcaaaacaaaaagattgattat 516  Q
    ||||||||||||||||||| |    ||||| ||||| ||||||||||||||||||||||  |||||||||||    
T  3417853 tttaaagggttttcattctattcacaaaaagaagggtggttttcaatctatcaaaacaattagattgattat 3417782  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 3417901 - 3417860
Alignment:
Q  162 attctggatttgttgttcaccgaaaataaactaccaattcaa 203  Q
    ||||||||||||||||||||  | ||||||||||||||||||    
T  3417901 attctggatttgttgttcacatagaataaactaccaattcaa 3417860  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 22419922 - 22419987
Alignment:
Q  138 gatctcaattacacatccacaatgattctggatttgttgttcaccgaaaataaactaccaattcaa 203  Q
    ||||||||||||||| |||||| |||||||||||||||  |||| || |||  |||||||||||||    
T  22419922 gatctcaattacacagccacaacgattctggatttgtttatcacggagaattgactaccaattcaa 22419987  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 92 - 203
Target Start/End: Complemental strand, 33504665 - 33504552
Alignment:
Q  92 tttactctcaataccgaaagcatgtg--cgagtttgttaataatttttgatctcaattacacatccacaatgattctggatttgttgttcaccgaaaata 189  Q
    |||||| ||||||| |||||||||||   || ||||||||| |||  | ||||||| |||||||||| ||  ||| |||||||||| ||||  || ||||    
T  33504665 tttactttcaatactgaaagcatgtgtatgaatttgttaatcattactaatctcaactacacatccataacaattttggatttgttattcatagataata 33504566  T
Q  190 aactaccaattcaa 203  Q
    ||||| ||||||||    
T  33504565 aactaacaattcaa 33504552  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 4085423 - 4085382
Alignment:
Q  162 attctggatttgttgttcaccgaaaataaactaccaattcaa 203  Q
    ||||||||||||||||||||  | ||||||||||||||||||    
T  4085423 attctggatttgttgttcacatagaataaactaccaattcaa 4085382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 139 - 203
Target Start/End: Original strand, 12345621 - 12345684
Alignment:
Q  139 atctcaattacacatccacaatgattctggatttgttgttcaccgaaaataaactaccaattcaa 203  Q
    |||||||||||| ||| ||||  ||||||||||||||||||||  | ||||||||| ||||||||    
T  12345621 atctcaattacagatc-acaacaattctggatttgttgttcacatagaataaactatcaattcaa 12345684  T

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