View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7648_high_8 (Length: 493)
Name: NF7648_high_8
Description: NF7648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7648_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 22 - 485
Target Start/End: Original strand, 2184883 - 2185346
Alignment:
| Q |
22 |
gccatagatttagagtctatacacacatgattctttttgctgttaaagctgttaaaggcagctacttgacgttggagttgaaattcagtgtttaatcttt |
121 |
Q |
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| T |
2184883 |
gccatagatttagagtctatacacacatgattctttttgctgttaaagctgttaaaggcagctacttgacgttggagttgaaattcagtgtttaatcttt |
2184982 |
T |
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| Q |
122 |
atccagccctcccctatctggggaatactttttgtgttttccatacataactttgatctttttatttgacacaggttggaaaatattgatgaaattttac |
221 |
Q |
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| T |
2184983 |
atccagccctcccctatctggggaatactttttgtgttttctatacataaccttgatctttttatatgacacaggttggaaaatattgatgaaattttac |
2185082 |
T |
|
| Q |
222 |
ggtcagctcgtctatccggatatttatacatccgaactgtacttaactgtccaaaccttcattagttcattttgcatccatctgctcgtcattacctaac |
321 |
Q |
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| T |
2185083 |
ggtcagctcgtctatccggatatttatacatccgaactgtacttaactgtccaaaccttcattagttcattttgcatccatctgcttgtcattacctaac |
2185182 |
T |
|
| Q |
322 |
gggcttagtactgactggctttctctttttctctacagagatggacagagcttccaggagaatctccacctattgatgataccgatgtagatgattggct |
421 |
Q |
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| T |
2185183 |
gggcttagtactgactggctttctctttttctctacagagatggacagagcttccaggagaatctccacctattgatgataccaatgtagatgattggct |
2185282 |
T |
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| Q |
422 |
tcctcgctttgttgttcttcagggtgaatgtctattcatatatttgttgagcacaggttctgct |
485 |
Q |
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| T |
2185283 |
tcctcgctttgttgttcttcagggtgaatgtctattcatatatttgttgagtacaggttgtgct |
2185346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 372 - 479
Target Start/End: Complemental strand, 41962295 - 41962188
Alignment:
| Q |
372 |
cttccaggagaatctccacctattgatgataccgatgtagatgattggcttcctcgctttgttgttcttcagggtgaatgtctattcatatatttgttga |
471 |
Q |
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||||| |||||| | |||||||| |||||||| || |||||||||||||||||||||||||| |||||||| || | |||| ||||| ||||||||||| |
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| T |
41962295 |
cttccgggagaacccccacctatagatgatactgaagtagatgattggcttcctcgctttgtcgttcttcatggagcatgtatattcttatatttgttgt |
41962196 |
T |
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| Q |
472 |
gcacaggt |
479 |
Q |
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| T |
41962195 |
gtacaggt |
41962188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 190 - 264
Target Start/End: Complemental strand, 41962487 - 41962413
Alignment:
| Q |
190 |
acacaggttggaaaatattgatgaaattttacggtcagctcgtctatccggatatttatacatccgaactgtact |
264 |
Q |
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|||||||||| || ||||||||||| || | ||||||||||||||||| || |||||| |||| |||||||||| |
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| T |
41962487 |
acacaggttgcaacatattgatgaagttctgcggtcagctcgtctatctggctatttaaacattagaactgtact |
41962413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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